View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19314_low_7 (Length: 365)

Name: NF19314_low_7
Description: NF19314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19314_low_7
NF19314_low_7
[»] chr2 (2 HSPs)
chr2 (1-277)||(7858831-7859103)
chr2 (279-350)||(7859142-7859213)
[»] chr3 (2 HSPs)
chr3 (142-228)||(20631032-20631118)
chr3 (179-277)||(3324403-3324501)
[»] chr8 (3 HSPs)
chr8 (197-253)||(29281318-29281374)
chr8 (141-232)||(10380202-10380292)
chr8 (179-232)||(26300472-26300525)
[»] scaffold0842 (1 HSPs)
scaffold0842 (179-258)||(4068-4147)
[»] chr7 (2 HSPs)
chr7 (179-258)||(18412792-18412871)
chr7 (184-258)||(21645164-21645238)
[»] chr1 (2 HSPs)
chr1 (179-258)||(19359712-19359791)
chr1 (179-277)||(47099673-47099771)


Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 7858831 - 7859103
Alignment:
Q  1 atagcacctgcatcctcatattcctatgagccaactagaaattgcatggaatcaccattgtctccttactcgggataatccctctcgtaatgcttggttt 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7858831 atagcacctgcatcctcatgttcctatgagccaactagaaattgcatggaatcaccattgtctccttactcgggataatccctctcgtaatggttggttt 7858930  T
Q  101 tgtggtagttgaaatagttatacttcgacttgtcgtcagtcaccctttaagtttccatggtttcttctactcccacctctccatcttgcaacactcaagc 200  Q
    |||||||||| |||||||||||||||||||||||    || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7858931 tgtggtagttaaaatagttatacttcgacttgtc----gttaccctttaagtttccatggtttcttctactcccacctctccctcttgcaacactcaagc 7859026  T
Q  201 cttcactattatcatcaaacttcaagtccttggattagtttaactccttggttctcaacgtcatttggacttcctcc 277  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||    
T  7859027 cttcactattatcatcaaacttcaagtccttggactagtttaactcattggttttcaacgtcatttggacttcctcc 7859103  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 279 - 350
Target Start/End: Original strand, 7859142 - 7859213
Alignment:
Q  279 ttgaaatgctcataaattctacgtaatgcacataataagggtatatttttgtcttcatcctttgttttcatt 350  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||    
T  7859142 ttgaaatgctcataaattctacgtaatgcacagaataagggtatatttttgtcttcatcctcttttttcatt 7859213  T

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Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 20631118 - 20631032
Alignment:
Q  142 accctttaagtttccatggtttcttctactcccacctctccatcttgcaacactcaagccttcactattatcatcaaacttcaagtc 228  Q
    ||||||| |||||||||| |||| ||||||||||| ||||| |||||  |||||||||||||||| | ||||||||| |||||||||    
T  20631118 accctttgagtttccatgatttcctctactcccacatctccctcttgagacactcaagccttcaccactatcatcaaccttcaagtc 20631032  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 277
Target Start/End: Complemental strand, 3324501 - 3324403
Alignment:
Q  179 ctccatcttgcaacactcaagccttcactattatcatcaaacttcaagtccttggattagtttaactccttggttctcaacgtcatttggacttcctcc 277  Q
    |||| |||||||||| |||||||||||| |   ||||||| ||||||||||||| | | | | || |||||||||||||||| |  |||||| ||||||    
T  3324501 ctccctcttgcaacattcaagccttcaccaccttcatcaaccttcaagtccttgaacttggtcaattccttggttctcaacgcctcttggacctcctcc 3324403  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 29281374 - 29281318
Alignment:
Q  197 aagccttcactattatcatcaaacttcaagtccttggattagtttaactccttggtt 253  Q
    |||||||||| ||||||||||||||||||||||||| | ||  ||||||| ||||||    
T  29281374 aagccttcaccattatcatcaaacttcaagtccttgaactatgttaactctttggtt 29281318  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 232
Target Start/End: Original strand, 10380202 - 10380292
Alignment:
Q  141 caccctttaagtttccatggtttcttctactcccacctctccatcttgcaacactcaagccttcactattatcatcaaacttcaagtccttg 232  Q
    |||||||| |||||||| | |||| |||||||| ||| || | |||||  ||| |||||||||||| | ||||||||||||||||| |||||    
T  10380202 caccctttgagtttccacgatttcctctactcc-accacttcctcttgagacattcaagccttcacgagtatcatcaaacttcaagaccttg 10380292  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 26300472 - 26300525
Alignment:
Q  179 ctccatcttgcaacactcaagccttcactattatcatcaaacttcaagtccttg 232  Q
    |||| |||||||||| ||||||||||||||   ||||||| |||||||||||||    
T  26300472 ctccctcttgcaacattcaagccttcactaccttcatcaatcttcaagtccttg 26300525  T

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Target: scaffold0842 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0842
Description:

Target: scaffold0842; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 258
Target Start/End: Complemental strand, 4147 - 4068
Alignment:
Q  179 ctccatcttgcaacactcaagccttcactattatcatcaaacttcaagtccttggattagtttaactccttggttctcaa 258  Q
    |||| |||||||||| ||||||||||||||   ||||||| ||||||||||||| | | | | || ||||||||||||||    
T  4147 ctccctcttgcaacattcaagccttcactaccttcatcaaccttcaagtccttgaacttggtcaattccttggttctcaa 4068  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 258
Target Start/End: Original strand, 18412792 - 18412871
Alignment:
Q  179 ctccatcttgcaacactcaagccttcactattatcatcaaacttcaagtccttggattagtttaactccttggttctcaa 258  Q
    |||| |||||||||| ||||||||||||||   ||||||| ||||||||||||| | | | | || ||||||||||||||    
T  18412792 ctccctcttgcaacattcaagccttcactaccttcatcaaccttcaagtccttgaacttggtcaattccttggttctcaa 18412871  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 21645164 - 21645238
Alignment:
Q  184 tcttgcaacactcaagccttcactattatcatcaaacttcaagtccttggattagtttaactccttggttctcaa 258  Q
    |||||||||| ||||||||||||||   ||||||| ||||||||||||| | | | | || ||||||||||||||    
T  21645164 tcttgcaacattcaagccttcactaccttcatcaaccttcaagtccttgaacttggtcaattccttggttctcaa 21645238  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 258
Target Start/End: Complemental strand, 19359791 - 19359712
Alignment:
Q  179 ctccatcttgcaacactcaagccttcactattatcatcaaacttcaagtccttggattagtttaactccttggttctcaa 258  Q
    |||| |||||||||| ||||||||||||||   ||||||| ||||||||||||| | | | | || ||||||||||||||    
T  19359791 ctccctcttgcaacattcaagccttcactaccttcatcaaccttcaagtccttgaacttggtcaattccttggttctcaa 19359712  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 277
Target Start/End: Complemental strand, 47099771 - 47099673
Alignment:
Q  179 ctccatcttgcaacactcaagccttcactattatcatcaaacttcaagtccttggattagtttaactccttggttctcaacgtcatttggacttcctcc 277  Q
    |||| |||||||||| |||||||||||| |   || |||| ||||||||||||| | | | |||| |||||||||||||| |||  |||||| ||||||    
T  47099771 ctccctcttgcaacattcaagccttcaccaccttcttcaaccttcaagtccttgaacttggttaattccttggttctcaaagtcgcttggacctcctcc 47099673  T

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