View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19315_low_1 (Length: 1070)
Name: NF19315_low_1
Description: NF19315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19315_low_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 991; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 991; E-Value: 0
Query Start/End: Original strand, 16 - 1070
Target Start/End: Complemental strand, 16830563 - 16829509
Alignment:
| Q |
16 |
attttcaattttttccatttccttcatgattcatcaatattccctctccctctatatttgtacctagtagcccaatacatataatgaagaaaattcaacc |
115 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16830563 |
attttcaattttttccatttacttcatgattcatcaatatttcctctccctctatatttgtacctagtagcccaatacatataatgaagaaaattcaacc |
16830464 |
T |
|
| Q |
116 |
cactaagcacacacattaaccaatagaatctctccaaatgatagttatcaaggttggacccacttaaccatggtttatgactaccattaccagtaacact |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16830463 |
cactaagcacacacattaaccaatagaatctctccaaatgatagttatcaagatttgacccacttaaccatggtttatgactaccattaccagtaacact |
16830364 |
T |
|
| Q |
216 |
gtttactatagaaacaatcactgaactaaggtaatatcccattgccaaagaagcccaagaaagtgatgttgctaatgatctcatacttgaaggtgcttct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16830363 |
gtttactatagaaacaatcactgaactaaggtaatatcccattgccaaagaagcccaagaaagtgatgttgctaatgatctcatacttgaaggtgcttct |
16830264 |
T |
|
| Q |
316 |
gagaagaaaaattccagtaatccagccaatgtgaaaagatcagctgaaccaagaaataaatactgaaaacctatccaaagaaatgaaataggtaatggat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16830263 |
gagaagaaaaattccagtaatccagccaatgtgaaaagatcagctgaaccaagaaataaatactgaaaacctatccaaagaaatgaaataggtaatggat |
16830164 |
T |
|
| Q |
416 |
tcttttcatttgaatgtgatgctatttttcgtcttttgatttcaacaattgcagctatagccattgcaactatagagagtattagtccaattccaattct |
515 |
Q |
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| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
16830163 |
ttttttcatttgagtgtgatgctattttttgtcttttgatttcaacaattgcagctatagccattgcaactatagagagtattagcccaattccaattct |
16830064 |
T |
|
| Q |
516 |
ttggagatgagttattcctgcttctgattttgtaacttttcttgcataagggattataatgtgatcatatattggtgctaggatcatgaggaagagtacc |
615 |
Q |
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| T |
16830063 |
ttggagatgagttattcctgcttctgattttgtaacttttcttgcataagggattataatgtgatcatatattggtgctaggatcatgaggaagagtacc |
16829964 |
T |
|
| Q |
616 |
gggaaaaccggtaatgaagcaggcggaactttgaaggaggaaaagagggctgtgttcattgtggcggcttgttcgactgagaatgtggagagttgagcta |
715 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
16829963 |
gggaaaaccggtaatgaagcaggcggaactttgaaggaggagaagagggttgtgttcattgtcgcggcttgttcgactgagaatgtggagagttgagcta |
16829864 |
T |
|
| Q |
716 |
agcaagcgttgagcatgattgtgcacgcgaaaatcgggaatattttgaacactagtttgacatcttctagttgttgaattgtgcattgtagtgatgaatg |
815 |
Q |
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| T |
16829863 |
agcaagcgttgagcatgattgtgcacgcgaaaatcgggaatattttgaagactagtttgacatcttctagttgttggattgtgcattgtagtgatgaatg |
16829764 |
T |
|
| Q |
816 |
aattggtttgtttgtgattgctttgttgagaaattttagagattctgatggtgtttgagatggtgtggttggttttagggtttgatgtagttcttgttct |
915 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16829763 |
aattggtttgtttgtgattgctttgttgagaaattttagagattctgatggtatttgagatggtgtggttggttttagggtttgatgtagttcttgttct |
16829664 |
T |
|
| Q |
916 |
tttgcgtgtgtgcttggatttgaagggcttgatgacatatttacaactgcactgcaagagtttttgtttgtgcagcaactattaagtgttgcagcaataa |
1015 |
Q |
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||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16829663 |
tttgcttgtgtgcttggatttgaagggcttgatgacatgtttacaactgcactgcaagagtttttgtttgtgcagcaactattaagtgttgcagcaataa |
16829564 |
T |
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| Q |
1016 |
gaacctgatcattttcaaaacaagaaaacacaacataattgaattagtcaaagcc |
1070 |
Q |
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| T |
16829563 |
gaacctgatcattttcaaaacaagaaaacacaacataattgaattagtcaaagcc |
16829509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 9e-42; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 64 - 383
Target Start/End: Original strand, 25170032 - 25170351
Alignment:
| Q |
64 |
cctctatatttgtacctagtagcccaatacatataatgaagaaaattcaacccactaagcacacacattaaccaatagaatctctccaaatgatagttat |
163 |
Q |
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|||||||| ||||||||| | |||||| ||| ||||| ||||||||||| ||| ||||||||||||| | |||||| || ||||| |||||||| | | |
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| T |
25170032 |
cctctatacttgtacctaattgcccaaaacaagtaatgcagaaaattcaagccagtaagcacacacataagccaataaaacctctctaaatgataatggt |
25170131 |
T |
|
| Q |
164 |
caaggttggacccacttaaccatggtttatgactaccattaccagtaacactgtttactatagaaacaatcactgaactaaggtaatatcccattgccaa |
263 |
Q |
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|||||| || ||| |||||| ||||||||| ||||||||||||||| || ||||| || | |||||||||||| | ||||| || | |||||| |
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| T |
25170132 |
taaggttagaaccagataaccaaggtttatgagaggaattaccagtaacactattaactattgatataatcactgaacttaaataataacctaatgccaa |
25170231 |
T |
|
| Q |
264 |
agaagcccaagaaagtgatgttgctaatgatctcatacttgaaggtgcttctgagaagaaaaattccagtaatccagccaatgtgaaaagatcagctgaa |
363 |
Q |
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||||||||||| ||||||||| || | |||||||| | |||||||||| |||||||||||||| || ||||||| |||||||||||||||||| |
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| T |
25170232 |
agaagcccaagtaagtgatgtagcccaagatctcattttaattggtgcttctgtgaagaaaaattccaacaaaccagccatagtgaaaagatcagctgaa |
25170331 |
T |
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| Q |
364 |
ccaagaaataaatactgaaa |
383 |
Q |
| |
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|||||||| || |||||||| |
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| T |
25170332 |
ccaagaaacaagtactgaaa |
25170351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 475 - 787
Target Start/End: Original strand, 25170455 - 25170764
Alignment:
| Q |
475 |
gccattgcaactatagagagtattagtccaattccaattctttggagatgagttattcctgcttctgattttgtaacttttcttgcataagggattataa |
574 |
Q |
| |
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|||||||||| |||||| || | || |||||||||||||||||| ||||| |||||||| |||||||||||| |||||||||| | || || || | |
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| T |
25170455 |
gccattgcaattatagataggactaatccaattccaattctttgaagatgtgttattcccatttctgattttgtgtattttcttgcaaagggtataatta |
25170554 |
T |
|
| Q |
575 |
tgtgatcatatattggtgctaggatcatgaggaagagtaccgggaaaaccggtaatgaagcaggcggaactttgaaggaggaaaagagggctgtgttcat |
674 |
Q |
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|||||||||| ||||||||||||||||| | ||| ||||||||||||| ||||||||||| || || ||||| | | ||| || ||||||||| |
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| T |
25170555 |
tgtgatcataaattggtgctaggatcattatgaaaagtaccgggaaaattggtaatgaagccggtggtactttta---atgaaccgaattttgtgttcat |
25170651 |
T |
|
| Q |
675 |
tgtggcggcttgttcgactgagaatgtggagagttgagctaagcaagcgttgagcatgattgtgcacgcgaaaatcgggaatattttgaacactagtttg |
774 |
Q |
| |
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||| ||||||||||||||||||||||| || ||||||||||||||| ||| || | |||||||| |||||||| |||| ||||| || |||| ||| |
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| T |
25170652 |
tgtcgcggcttgttcgactgagaatgttgatagttgagctaagcaacagtttaggacaattgtgcaggcgaaaattgggaggatttttaagactattttt |
25170751 |
T |
|
| Q |
775 |
acatcttctagtt |
787 |
Q |
| |
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|| ||||| |||| |
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| T |
25170752 |
acgtcttcgagtt |
25170764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 248 - 365
Target Start/End: Complemental strand, 44613320 - 44613203
Alignment:
| Q |
248 |
aatatcccattgccaaagaagcccaagaaagtgatgttgctaatgatctcatacttgaaggtgcttctgagaagaaaaattccagtaatccagccaatgt |
347 |
Q |
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|||||||||| ||||| |||||||| ||||||||||| ||||| || |||||||| ||||||| || | ||||||||| |||| | ||||||||||| |
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| T |
44613320 |
aatatcccatagccaatgaagcccatgaaagtgatgtagctaaagacctcatactccaaggtgcctcagtgaagaaaaactccatcataccagccaatgt |
44613221 |
T |
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| Q |
348 |
gaaaagatcagctgaacc |
365 |
Q |
| |
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||||||||||||||||| |
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| T |
44613220 |
aaaaagatcagctgaacc |
44613203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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