View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19315_low_2 (Length: 572)
Name: NF19315_low_2
Description: NF19315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19315_low_2 |
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| [»] scaffold0386 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 271 - 527
Target Start/End: Original strand, 813234 - 813488
Alignment:
| Q |
271 |
tcctagtaattgacacatacatacatatttcaaactccaaatttcacggaagaaatagtaaaatcttatgcaatcttctt-gttatttatcnnnnnnnnn |
369 |
Q |
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| T |
813234 |
tcctagtaattgacacatacatacatatttcaaactccaaatttcatggaagaaatagtaaaatcttatgcaatcttctttgttattcatcaaaaaaaaa |
813333 |
T |
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| Q |
370 |
nnnnnnnnnnnnctctgcaacaaaacgaacttagcccatgtcaaagaaagaagaaagaatccacccaccatattcatgaattctaaagctcaaaatttct |
469 |
Q |
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| T |
813334 |
aaaaaaaaa---ctctgcaacaaaacgaacttagcccatgtcaaagaaagaagaaagaatccacccaccatattcatgaattctaaagctcaaaatttct |
813430 |
T |
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| Q |
470 |
ttacctacatacacgtgacactcaagtaatcaaacccatcatcacataaaattaaaat |
527 |
Q |
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| T |
813431 |
ttacctacatacacgtgacactcaagtaatcaaacccatcatcacataaaattaaaat |
813488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 16 - 169
Target Start/End: Original strand, 813029 - 813182
Alignment:
| Q |
16 |
ataacatgattataaatttgtgccatnnnnnnntcaaactttttctttgacaaactacatataaaccttcaaattcagaataaatatttcttcgtcctgc |
115 |
Q |
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| T |
813029 |
ataacatgattataaatttgtgtcataaaaaaatcaaactttttctttgacaaactacatataaaccttcaaattcagaataaatatttcttggtcctgg |
813128 |
T |
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| Q |
116 |
atgtgtaaactgttcccattcatcatgttacaaaatgaagaaggtaatcgaaat |
169 |
Q |
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| T |
813129 |
atgtgtaaactgttcccattcatcatgttacaaaatgaagaaggtaatcgaaat |
813182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0386 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0386
Description:
Target: scaffold0386; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 572
Target Start/End: Complemental strand, 1235 - 1202
Alignment:
| Q |
539 |
tgagttttctttcccttctctttgcttaaacctg |
572 |
Q |
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| T |
1235 |
tgagttttctttctcttctctttgcttaaacctg |
1202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 572
Target Start/End: Original strand, 38460525 - 38460558
Alignment:
| Q |
539 |
tgagttttctttcccttctctttgcttaaacctg |
572 |
Q |
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| T |
38460525 |
tgagttttctttctcttctctttgcttaaacctg |
38460558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 572
Target Start/End: Original strand, 33878718 - 33878751
Alignment:
| Q |
539 |
tgagttttctttcccttctctttgcttaaacctg |
572 |
Q |
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| T |
33878718 |
tgagttttctttctcttctctttgcttaaacctg |
33878751 |
T |
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