View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19315_low_4 (Length: 359)

Name: NF19315_low_4
Description: NF19315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19315_low_4
NF19315_low_4
[»] chr2 (2 HSPs)
chr2 (23-343)||(18031813-18032133)
chr2 (90-243)||(19804086-19804239)
[»] chr6 (3 HSPs)
chr6 (61-326)||(32878649-32878912)
chr6 (61-315)||(1068645-1068898)
chr6 (100-286)||(2612785-2612971)
[»] scaffold0026 (2 HSPs)
scaffold0026 (72-317)||(71269-71513)
scaffold0026 (79-302)||(73317-73537)
[»] chr5 (4 HSPs)
chr5 (61-326)||(28361016-28361279)
chr5 (90-243)||(40578894-40579047)
chr5 (90-243)||(27272683-27272835)
chr5 (89-163)||(16547954-16548029)
[»] chr8 (1 HSPs)
chr8 (61-326)||(21178159-21178423)
[»] scaffold0205 (1 HSPs)
scaffold0205 (61-326)||(3144-3408)
[»] scaffold0009 (1 HSPs)
scaffold0009 (80-326)||(224955-225200)
[»] chr4 (3 HSPs)
chr4 (61-206)||(18274244-18274389)
chr4 (90-273)||(48086805-48086987)
chr4 (263-326)||(18274399-18274462)
[»] chr1 (3 HSPs)
chr1 (61-243)||(25607263-25607446)
chr1 (90-243)||(27774560-27774713)
chr1 (248-328)||(51058485-51058565)
[»] chr3 (4 HSPs)
chr3 (90-310)||(1731206-1731423)
chr3 (214-280)||(12126643-12126708)
chr3 (90-195)||(11984757-11984862)
chr3 (95-160)||(12126488-12126553)
[»] scaffold1752 (1 HSPs)
scaffold1752 (90-243)||(1087-1240)
[»] scaffold0158 (1 HSPs)
scaffold0158 (90-243)||(11415-11568)
[»] scaffold0743 (2 HSPs)
scaffold0743 (80-194)||(4-118)
scaffold0743 (80-194)||(318-432)
[»] chr7 (2 HSPs)
chr7 (90-243)||(25753248-25753401)
chr7 (89-191)||(12329408-12329510)


Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 23 - 343
Target Start/End: Complemental strand, 18032133 - 18031813
Alignment:
Q  23 acgacattgacttcgaaaaatacaacgaaaatagagacaaacgacatctgacttcgaaaaattcatatttttaattgaaaaggttaaagcgaaatcaatt 122  Q
    |||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  18032133 acgacattgacttcaaaaaatactacaaaaatagagacaaacgacatctgacttcgaaaaattcatatttttaattgaaaaggttaaagcgaaatcactt 18032034  T
Q  123 ctcttcctttaattaagaatctattgaattaagaaaagagaatttgtaagcccgtaattatacactacgaaagcagtgagttacacgtcagaaaattccg 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  18032033 ctcttcctttaattaagaatctattgaattaagaaaagagaatttgtaagcccgtaattatacactacgaaagcagcgagttacacgtcaaaaaattccg 18031934  T
Q  223 acaacgtattgcgaaagcaaaacggtgtctcttattcaatattttctacaaaagttttatttttcttgttactatttaataagcgcaaaattactcgagt 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  18031933 acaacgtattgcgaaagcaaaacggtgtctcttattcaatattttctacaaaagttttatttttctcgttactatttaataagcgcaaaattactcgagt 18031834  T
Q  323 gacggaaacccgtcgtttatg 343  Q
    |||||||||||||||||||||    
T  18031833 gacggaaacccgtcgtttatg 18031813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 90 - 243
Target Start/End: Complemental strand, 19804239 - 19804086
Alignment:
Q  90 tttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaagagaatttgtaagcccgtaattatacacta 189  Q
    |||||||| |||||||||||||||||| || |||| ||| ||||||||||| | ||||||||| |||||| ||||||| || ||| |||| ||||| |||    
T  19804239 tttttaatcgaaaaggttaaagcgaaagcatttcttttcttttaattaagagtttattgaatttagaaaaaagaatttttaggcctgtaactatacgcta 19804140  T
Q  190 cgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaa 243  Q
     ||||| || | |||||  |||  |||||||||||||||| |||||||||||||    
T  19804139 tgaaagtagggggttacgtgtctaaaaattccgacaacgtgttgcgaaagcaaa 19804086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 61 - 326
Target Start/End: Complemental strand, 32878912 - 32878649
Alignment:
Q  61 aaacgacatctgacttcgaaaaattcatatttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaag 160  Q
    |||||||||| |||||  ||||||||| |||||||||||||||||||||||| ||| || || | ||| ||||||||||||| ||||||||||||||||     
T  32878912 aaacgacatccgacttaaaaaaattcagatttttaattgaaaaggttaaagcaaaaacacttattttcttttaattaagaatttattgaattaagaaaaa 32878813  T
Q  161 agaatttgtaagcccgtaattatacactacgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaaacggtgtctcttattca 260  Q
    ||||||| |||||| |||||||||||||||||||  || ||||||| ||||  |||||||||||||||| |||||||||| |||||||||||||| ||||    
T  32878812 agaatttttaagcctgtaattatacactacgaaa-tagggagttacgcgtctaaaaattccgacaacgtgttgcgaaagc-aaacggtgtctcttgttca 32878715  T
Q  261 atattttctacaaaagttttatttttcttgttactatttaataagcgcaaaattactcgagtgacg 326  Q
    ||||||||| |||||||||||||||||| ||||||||||||| ||| ||||  |||||||||||||    
T  32878714 atattttctgcaaaagttttatttttctcgttactatttaattagcacaaagctactcgagtgacg 32878649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 61 - 315
Target Start/End: Original strand, 1068645 - 1068898
Alignment:
Q  61 aaacgacatctgacttcgaaaaattcatatttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaag 160  Q
    ||||||||| | |||| |||||||| | |||||||||||| ||||||||||||||| || |||| ||| ||| ||||||||| |||||||||||||||||    
T  1068645 aaacgacatataacttagaaaaatttagatttttaattgagaaggttaaagcgaaaacatttcttttcttttcattaagaatttattgaattaagaaaag 1068744  T
Q  161 agaatttgtaagcccgtaattatacactacgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaaacggtgtctcttattca 260  Q
      ||||| |||    |||| ||||||||||||||  || ||||  |    |  ||| |||||||||||||||||||||||||  |  |||||||||||||    
T  1068745 gaaatttttaaatttgtaactatacactacgaaactagggagtagcttacctaaaacttccgacaacgtattgcgaaagcaat-caatgtctcttattca 1068843  T
Q  261 atattttctacaaaagttttatttttcttgttactatttaataagcgcaaaatta 315  Q
    ||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||    
T  1068844 atattttttacaaaagttttatttttctcgttactatttaattagcgcaaaatta 1068898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 100 - 286
Target Start/End: Original strand, 2612785 - 2612971
Alignment:
Q  100 aaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaagagaatttgtaagcccgtaattatacactacgaaagcagt 199  Q
    |||| ||||||||||||||| |||| ||  ||||||||||||| |||||||||||||||||||||||| |||||   ||| |||| |||||| ||||||     
T  2612785 aaaaagttaaagcgaaatcatttcttttattttaattaagaatttattgaattaagaaaagagaatttttaagcttataactatatactacggaagcagg 2612884  T
Q  200 gagttacacgtcagaaaattccgacaacgtattgcgaaagcaaaacggtgtctcttattcaata-ttttctacaaaagttttattttt 286  Q
    ||||||  ||||  ||||| | |||||||||||| |||||| ||||   ||||||| || |||| |||||||||||||||||||||||    
T  2612885 gagttatgcgtctaaaaatcctgacaacgtattgtgaaagc-aaacaaagtctcttgtttaatatttttctacaaaagttttattttt 2612971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 72 - 317
Target Start/End: Original strand, 71269 - 71513
Alignment:
Q  72 gacttcgaaaaattcatatttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaagagaatttgtaa 171  Q
    ||||| |||||||||| |||||||| ||||||| ||||||||||| || |||| ||| ||||||||||| | |||||||||||||||||||||||| |||    
T  71269 gacttagaaaaattcagatttttaaatgaaaagcttaaagcgaaagcacttcttttcttttaattaagatt-tattgaattaagaaaagagaatttttaa 71367  T
Q  172 gcccgtaattatacactacgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaaacggtgtctcttattcaatattttctac 271  Q
    ||  |||| ||||||||||||||| || ||||||| |  |  | ||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  71368 gcttgtaaatatacactacgaaagtagcgagttacgcacctaataattctgacaacgtattgcgaaagc-aaacggtgtctcttgttcaatattttctac 71466  T
Q  272 aaaagttttatt-tttcttgttactatttaataagcgcaaaattact 317  Q
    |||||||||||| ||||| ||||||||||||| ||||||||||||||    
T  71467 aaaagttttattgtttctcgttactatttaattagcgcaaaattact 71513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 79 - 302
Target Start/End: Original strand, 73317 - 73537
Alignment:
Q  79 aaaaattcatatttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaagagaatttgtaagcccgta 178  Q
    ||||||||| |||||| |||||||||||||| |||||| || |||| ||| ||||||||||||| | |||||||||||||||||||||| |||||  |||    
T  73317 aaaaattcaaatttttgattgaaaaggttaa-gcgaaagcatttcttttcatttaattaagaatttgttgaattaagaaaagagaatttctaagcttgta 73415  T
Q  179 attatacactacgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaaacggtgtctcttattcaatattttctacaaaagtt 278  Q
    | ||||||||||||||| ||    ||||  | |  ||||||| ||||||||||||||||||| |||||  ||||||| ||||||||||||| ||||||||    
T  73416 actatacactacgaaag-agaattttacgtgcctaaaaattctgacaacgtattgcgaaagc-aaacgacgtctcttgttcaatattttctgcaaaagtt 73513  T
Q  279 ttatttttcttgttactatttaat 302  Q
    |||||||||| |||||||||||||    
T  73514 ttatttttctcgttactatttaat 73537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 61 - 326
Target Start/End: Original strand, 28361016 - 28361279
Alignment:
Q  61 aaacgacatctgacttcgaaaaattcatatttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaag 160  Q
    |||||| ||| ||||| |||||||||| ||||||||||||||| |||||||| ||| || |||| ||| ||||||||||||| |||||||||||||||||    
T  28361016 aaacgatatccgacttagaaaaattcagatttttaattgaaaatgttaaagccaaagcacttcttttcttttaattaagaatttattgaattaagaaaag 28361115  T
Q  161 agaatttgtaagcccgtaattatacactacgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaaacggtgtctcttattca 260  Q
     |||||| |||||| |||||||||||||||||||| || |||||||  | |  ||| ||| ||||||||||||| ||||| |||||  ||||||| ||||    
T  28361116 -gaatttttaagcctgtaattatacactacgaaagtagggagttacgtgcctaaaatttctgacaacgtattgcaaaagc-aaacgcagtctcttgttca 28361213  T
Q  261 atattttctacaaaagttttatttttcttgttactatttaataagcgcaaaattactcgagtgacg 326  Q
    |||||||||||||||||||||| ||||| ||||||||||||| |||||||| ||||  ||||||||    
T  28361214 atattttctacaaaagttttatctttctcgttactatttaattagcgcaaagttacgtgagtgacg 28361279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 90 - 243
Target Start/End: Original strand, 40578894 - 40579047
Alignment:
Q  90 tttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaagagaatttgtaagcccgtaattatacacta 189  Q
    |||||||| |||||||||||||| ||| || || | ||| ||||||||||| | ||||||||| ||||||  |||||| || ||| |||||||||| |||    
T  40578894 tttttaatagaaaaggttaaagcaaaagcatttattttcttttaattaagagtttattgaatttagaaaaaggaatttttaggcctgtaattatacgcta 40578993  T
Q  190 cgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaa 243  Q
    |||||| ||   ||||| ||||  ||||||||||||| || |||||||||||||    
T  40578994 cgaaagtaggttgttacgcgtctaaaaattccgacaatgtgttgcgaaagcaaa 40579047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 243
Target Start/End: Original strand, 27272683 - 27272835
Alignment:
Q  90 tttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaagagaatttgtaagcccgtaattatacacta 189  Q
    |||||||| ||||| |||||||||||| || || | ||| ||||||||||| | ||||||||| ||||||  |||||| | || || |||||||||  ||    
T  27272683 tttttaatagaaaaagttaaagcgaaaacatttattttcttttaattaagagtttattgaatttagaaaaaggaattt-ttaggccttaattatacgata 27272781  T
Q  190 cgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaa 243  Q
    |||||| ||   ||||| | ||  |||||| ||||||||| || ||||||||||    
T  27272782 cgaaagtaggttgttacgcatctaaaaatttcgacaacgtgttacgaaagcaaa 27272835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 163
Target Start/End: Complemental strand, 16548029 - 16547954
Alignment:
Q  89 atttttaattgaaaaggttaaagcgaaatca-attctcttcctttaattaagaatctattgaattaagaaaagaga 163  Q
    |||||||||||||||||||||||| ||| ||  || | ||| ||||||||||||| |||||||| || ||||||||    
T  16548029 atttttaattgaaaaggttaaagcaaaaacatttttttttcttttaattaagaatttattgaatcaaaaaaagaga 16547954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 61 - 326
Target Start/End: Complemental strand, 21178423 - 21178159
Alignment:
Q  61 aaacgacatctgacttcgaaaaattcatatttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaag 160  Q
    |||||| ||| ||||| |||||||||| |||||||||||||||||||||||||||| || |||| ||| ||||||||||||| |||||||||||||||||    
T  21178423 aaacgatatccgacttagaaaaattcagatttttaattgaaaaggttaaagcgaaagcacttcttttcttttaattaagaatttattgaattaagaaaag 21178324  T
Q  161 agaatttgtaagcccgtaattatacactacgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaaacggtgtctcttattca 260  Q
      ||||| |||||| |||||||||||||||||||| || |||||||| | |  ||| ||| ||||||||||||||||||| | | |   |||||| ||||    
T  21178323 gaaatttttaagcctgtaattatacactacgaaagtagggagttacatgcctaaaatttctgacaacgtattgcgaaagc-ataggcaatctcttgttca 21178225  T
Q  261 atattttctacaaaagttttatttttcttgttactatttaataagcgcaaaattactcgagtgacg 326  Q
    |||| ||||||||||||||||| ||||| ||||||||||||| || ||||| ||||  ||||||||    
T  21178224 atatattctacaaaagttttatctttctcgttactatttaattagtgcaaagttacgtgagtgacg 21178159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 61 - 326
Target Start/End: Original strand, 3144 - 3408
Alignment:
Q  61 aaacgacatctgacttcgaaaaattcatatttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaag 160  Q
    |||||| ||| ||||| |||||||||| |||||||||||||||||||||||  ||| || || | ||| ||||||||||||| |||||||||||||||||    
T  3144 aaacgatatccgacttagaaaaattcagatttttaattgaaaaggttaaagtaaaaacacttattttcttttaattaagaatttattgaattaagaaaag 3243  T
Q  161 agaatttgtaagcccgtaattatacactacgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaaacggtgtctcttattca 260  Q
      ||||| |||||| |||||||||||||||||||| || |||||||  | |  ||| ||| |||||||||||||||||||||| ||   ||| || |||     
T  3244 gaaatttttaagcctgtaattatacactacgaaagtagggagttacgtgcctaaaatttctgacaacgtattgcgaaagcaaa-cgcaatcttttcttcc 3342  T
Q  261 atattttctacaaaagttttatttttcttgttactatttaataagcgcaaaattactcgagtgacg 326  Q
     ||||||||||||| ||||||| ||||| ||||||||||||| |||||||| ||||  ||||||||    
T  3343 ttattttctacaaatgttttatctttctcgttactatttaattagcgcaaagttacgtgagtgacg 3408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 80 - 326
Target Start/End: Complemental strand, 225200 - 224955
Alignment:
Q  80 aaaattcatatttttaattgaaaaggttaaagcgaaatcaattctcttccttt-aattaagaatctattgaattaagaaaagagaatttgtaagcccgta 178  Q
    |||| ||| ||||||||||||||||||||| |||||| || |||| ||  ||| || ||||||| |||| |||||||||||| || ||| |||||  |||    
T  225200 aaaactcagatttttaattgaaaaggttaatgcgaaagcacttcttttaattttaactaagaatttattaaattaagaaaagggattttttaagcatgta 225101  T
Q  179 attatacactacgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaaacggtgtctcttattcaatattttctacaaaagtt 278  Q
    |||||||| |||||||| || ||||||| | |   ||||||||||||  |||||| |||||||||  |||||||||| ||||| |||||||||||| |||    
T  225100 attatacaatacgaaagtagggagttacgcttttaaaaattccgacat-gtattgtgaaagcaaat-ggtgtctcttgttcaaaattttctacaaacgtt 225003  T
Q  279 ttatttttcttgttactatttaataagcgcaaaattactcgagtgacg 326  Q
    | |||||||| ||| ||||||||| |||||||| ||||||||||||||    
T  225002 taatttttctcgttgctatttaattagcgcaaagttactcgagtgacg 224955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 61 - 206
Target Start/End: Original strand, 18274244 - 18274389
Alignment:
Q  61 aaacgacatctgacttcgaaaaattcatatttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaag 160  Q
    |||||| ||| ||||| |||||||||| |||||||||||||||||||||||||||| || |||| ||| ||||||||||||| ||||||||||||||| |    
T  18274244 aaacgatatccgacttagaaaaattcagatttttaattgaaaaggttaaagcgaaagcacttcttttcttttaattaagaatttattgaattaagaaagg 18274343  T
Q  161 agaatttgtaagcccgtaattatacactacgaaagcagtgagttac 206  Q
      ||||| |||| | |||||||||||||||||||| || |||||||    
T  18274344 gaaatttttaagactgtaattatacactacgaaagtagggagttac 18274389  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 90 - 273
Target Start/End: Original strand, 48086805 - 48086987
Alignment:
Q  90 tttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaagagaatttgtaagcccgtaattatacacta 189  Q
    ||||||||||||| |||||||| |||| || |||| ||| ||||||||||| | ||||||||| ||||||  |||||| || ||| |||||||||| |||    
T  48086805 tttttaattgaaagggttaaagtgaaagcatttcttttcttttaattaagagtttattgaatttagaaaaaggaatttttaggcctgtaattatacgcta 48086904  T
Q  190 cgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaaacggtgtctcttattcaatattttctacaa 273  Q
    |||||| || |  ||||  |||  | | |||||||||||| |||||||||| ||||  |||||||| ||| ||| |||||||||    
T  48086905 cgaaagtaggggattacgtgtctaagagttccgacaacgtgttgcgaaagc-aaacattgtctcttgttcgataatttctacaa 48086987  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 263 - 326
Target Start/End: Original strand, 18274399 - 18274462
Alignment:
Q  263 attttctacaaaagttttatttttcttgttactatttaataagcgcaaaattactcgagtgacg 326  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||| ||||  ||||||||    
T  18274399 attttctacaaaagttttatctttcttgttactatttaattagcgcaaagttacatgagtgacg 18274462  T

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Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 61 - 243
Target Start/End: Complemental strand, 25607446 - 25607263
Alignment:
Q  61 aaacgacatctgacttcgaaaaat-tcatatttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaa 159  Q
    |||||| ||| ||||| ||||||| |||  |||||||| |||||||||||||||||| || |||| ||| ||||||||||| | ||||||||| ||||||    
T  25607446 aaacgatatccgacttagaaaaatatcaagtttttaatagaaaaggttaaagcgaaagcatttcttttcttttaattaagattttattgaatttagaaaa 25607347  T
Q  160 gagaatttgtaagcccgtaattatacactacgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaa 243  Q
      |||||| || ||| |||||||||| ||||||||| ||   ||||| ||||  |||||||||||||||| |||||||||||||    
T  25607346 aggaatttttaggcctgtaattatacgctacgaaagtaggttgttacgcgtctaaaaattccgacaacgtgttgcgaaagcaaa 25607263  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 90 - 243
Target Start/End: Complemental strand, 27774713 - 27774560
Alignment:
Q  90 tttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaagagaatttgtaagcccgtaattatacacta 189  Q
    |||||||| |||||||||||||||||| || |||| ||| ||||||||||| | ||||||||| |||||| ||||||| || ||| |||| ||||| |||    
T  27774713 tttttaatcgaaaaggttaaagcgaaagcatttcttttcttttaattaagagtttattgaatttagaaaaaagaatttttaggcctgtaactatacgcta 27774614  T
Q  190 cgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaa 243  Q
     ||||| || | |||||  |||  |||||||||||||||| |||||||||||||    
T  27774613 tgaaagtagggggttacgtgtctaaaaattccgacaacgtgttgcgaaagcaaa 27774560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 248 - 328
Target Start/End: Complemental strand, 51058565 - 51058485
Alignment:
Q  248 tgtctcttattcaatattttctacaaaagttttatttttcttgttactatttaataagcgcaaaattactcgagtgacgga 328  Q
    |||| ||| |||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||| ||||    
T  51058565 tgtcacttgttcaatattttctacaaaagttttatttctcttgttactatttaattagcacaaaattactcgagtggcgga 51058485  T

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Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 90 - 310
Target Start/End: Complemental strand, 1731423 - 1731206
Alignment:
Q  90 tttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaagagaatttgtaagcccgtaattatacacta 189  Q
    ||||||||||||||||||||||||||| || |||| ||| ||||||||||| | ||||||||| ||||||   ||||  || ||| |||||||||| |||    
T  1731423 tttttaattgaaaaggttaaagcgaaagcatttcttttcttttaattaagagtttattgaatttagaaaaagaaattattaggcctgtaattatacgcta 1731324  T
Q  190 cgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaaacggtgtctcttattcaatattttctacaaaagttttatttttctt 289  Q
    |||||| || | |||||| |||  | | |||||||||||| |||||||||| ||||  |||||||| ||| ||| |||||||  |||||||| || |||     
T  1731323 cgaaagtagggggttacatgtctaagagttccgacaacgtgttgcgaaagc-aaacattgtctcttgttcgataatttctac--aagttttaattctctc 1731227  T
Q  290 gttactatttaataagcgcaa 310  Q
    ||||| ||||||| |||||||    
T  1731226 gttaccatttaattagcgcaa 1731206  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 214 - 280
Target Start/End: Original strand, 12126643 - 12126708
Alignment:
Q  214 aaaattccgacaacgtattgcgaaagcaaaacggtgtctcttattcaatattttctacaaaagtttt 280  Q
    |||| ||||||||| |||||||||||||||  |||||||||| ||||||||||||| ||||||||||    
T  12126643 aaaaatccgacaacctattgcgaaagcaaat-ggtgtctcttgttcaatattttctgcaaaagtttt 12126708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 195
Target Start/End: Original strand, 11984757 - 11984862
Alignment:
Q  90 tttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaagagaatttgtaagcccgtaattatacacta 189  Q
    |||||||| |||||||||||||||||| || |||| ||| |||||||| || | | ||| | | ||||||  |||||| || ||| |||||||||| |||    
T  11984757 tttttaatagaaaaggttaaagcgaaagcatttcttttcttttaattatgagtttgttgtacttagaaaaatgaatttttaggcctgtaattatacgcta 11984856  T
Q  190 cgaaag 195  Q
    ||||||    
T  11984857 cgaaag 11984862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 95 - 160
Target Start/End: Original strand, 12126488 - 12126553
Alignment:
Q  95 aattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaag 160  Q
    |||||||||||||||||||||| |  | || ||| ||||||||||||  |||||||||||||||||    
T  12126488 aattgaaaaggttaaagcgaaaacgctccttttcttttaattaagaacttattgaattaagaaaag 12126553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1752 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold1752
Description:

Target: scaffold1752; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 90 - 243
Target Start/End: Complemental strand, 1240 - 1087
Alignment:
Q  90 tttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaagagaatttgtaagcccgtaattatacacta 189  Q
    ||||||||||||||||||||||||||| || |||| ||| ||||||||||| | ||||||||| ||||||   ||||| || ||| |||||||||| |||    
T  1240 tttttaattgaaaaggttaaagcgaaagcatttcttttcttttaattaagagtttattgaatttagaaaaagaaatttttaggcctgtaattatacgcta 1141  T
Q  190 cgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaa 243  Q
    |||||| || | |||||| |||  | | |||||||||||| |||||||||||||    
T  1140 cgaaagtagggggttacatgtctaagagttccgacaacgtgttgcgaaagcaaa 1087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 90 - 243
Target Start/End: Original strand, 11415 - 11568
Alignment:
Q  90 tttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaagagaatttgtaagcccgtaattatacacta 189  Q
    ||||||||||||||||||||||||||| || |||| ||| ||||||||||| | ||||||||| |||||| | || || || ||| |||||||||| |||    
T  11415 tttttaattgaaaaggttaaagcgaaagcatttcttttcttttaattaagagtttattgaatttagaaaaaaaaaattttaggcctgtaattatacccta 11514  T
Q  190 cgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaa 243  Q
    |||||| || | |||||| |||  | | |||||||||||| |||||||||||||    
T  11515 cgaaagtagggggttacatgtctaagagttccgacaacgtgttgcgaaagcaaa 11568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0743 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0743
Description:

Target: scaffold0743; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 80 - 194
Target Start/End: Complemental strand, 118 - 4
Alignment:
Q  80 aaaattcatatttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaagagaatttgtaagcccgtaa 179  Q
    |||||||| |||||||||||||||||||||||||||| || |||  ||  ||||||||||||  | ||||||||||||||| |||||| |||||  || |    
T  118 aaaattcaaatttttaattgaaaaggttaaagcgaaagcatttcatttattttaattaagaaattcttgaattaagaaaagggaatttttaagcttgtga 19  T
Q  180 ttatacactacgaaa 194  Q
    |||||||||||||||    
T  18 ttatacactacgaaa 4  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0743; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 80 - 194
Target Start/End: Complemental strand, 432 - 318
Alignment:
Q  80 aaaattcatatttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaagagaatttgtaagcccgtaa 179  Q
    |||||||| |||||||||||||||||||||||||||| || |||  ||  ||||||||||||  | ||||||||| |||||||||||| |||||  || |    
T  432 aaaattcaaatttttaattgaaaaggttaaagcgaaagcatttcatttattttaattaagaaattcttgaattaaaaaaagagaatttttaagcttgtga 333  T
Q  180 ttatacactacgaaa 194  Q
    |||||||||||||||    
T  332 ttatacactacgaaa 318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 243
Target Start/End: Original strand, 25753248 - 25753401
Alignment:
Q  90 tttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaagagaatttgtaagcccgtaattatacacta 189  Q
    |||||||| ||| |||||||||||||| || |||| ||| ||||||||||| | ||||||||| ||||||  |||||| || ||| |||||||||| |||    
T  25753248 tttttaatcgaagaggttaaagcgaaagcatttcttttcttttaattaagagtttattgaatttagaaaaaggaatttttaggcctgtaattatacgcta 25753347  T
Q  190 cgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaa 243  Q
    |||| | || | |||||  |||  | | |||||||||||| |||||||||||||    
T  25753348 cgaatgtagggggttacgtgtctaagagttccgacaacgtgttgcgaaagcaaa 25753401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 191
Target Start/End: Complemental strand, 12329510 - 12329408
Alignment:
Q  89 atttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaagagaatttgtaagcccgtaattatacact 188  Q
    |||||||||||| ||||||||||||||| || |||| | | ||| || |||||| |||||||| ||||||||||||||| |||||   || |||||||||    
T  12329510 atttttaattgagaaggttaaagcgaaaacatttctttccttttgataaagaatgtattgaatcaagaaaagagaatttttaagcttatagttatacact 12329411  T
Q  189 acg 191  Q
    |||    
T  12329410 acg 12329408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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