View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19315_low_7 (Length: 327)

Name: NF19315_low_7
Description: NF19315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19315_low_7
NF19315_low_7
[»] chr2 (9 HSPs)
chr2 (18-313)||(2803159-2803454)
chr2 (184-258)||(33561499-33561573)
chr2 (184-273)||(2336660-2336749)
chr2 (184-256)||(30312825-30312897)
chr2 (159-267)||(13766795-13766905)
chr2 (215-269)||(25390305-25390359)
chr2 (184-286)||(29873557-29873659)
chr2 (215-256)||(36005930-36005971)
chr2 (215-259)||(31468797-31468841)
[»] chr5 (2 HSPs)
chr5 (154-270)||(10351207-10351325)
chr5 (184-256)||(36521946-36522018)
[»] chr6 (4 HSPs)
chr6 (184-261)||(8481962-8482039)
chr6 (184-273)||(5034854-5034943)
chr6 (184-225)||(27226675-27226716)
chr6 (184-256)||(6071168-6071240)
[»] chr7 (2 HSPs)
chr7 (219-271)||(7192786-7192838)
chr7 (215-256)||(21619095-21619136)
[»] chr3 (3 HSPs)
chr3 (189-273)||(41857465-41857549)
chr3 (184-225)||(260805-260846)
chr3 (159-236)||(32930698-32930775)
[»] chr8 (4 HSPs)
chr8 (159-297)||(40991764-40991902)
chr8 (210-273)||(30737651-30737714)
chr8 (184-261)||(4154326-4154402)
chr8 (210-273)||(11442915-11442979)
[»] chr4 (5 HSPs)
chr4 (159-237)||(42480533-42480611)
chr4 (215-261)||(22028412-22028458)
chr4 (192-273)||(23630348-23630429)
chr4 (184-256)||(34544142-34544215)
chr4 (184-297)||(41603198-41603311)
[»] chr1 (5 HSPs)
chr1 (184-297)||(30576592-30576705)
chr1 (184-256)||(1188638-1188710)
chr1 (215-261)||(32594761-32594807)
chr1 (184-257)||(1187413-1187486)
chr1 (210-297)||(30208188-30208276)


Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 313
Target Start/End: Complemental strand, 2803454 - 2803159
Alignment:
Q  18 acccccactcggttacttacaatagtgttgatattcatattggacatgtttttcaaataagaaataacccttaaatatactttgtttcttacctaaggca 117  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2803454 acccccactcggttacttactatagtgttgatattcatattggacatgtttttcaaataagaaataacccttaaatatactttgtttcttacctaaggca 2803355  T
Q  118 atgaaaaaatgtgataccaacaccaacggcaacaattgtaggttaaaagtctcacattatttaaagaagtggaggttgaacattctataaaagagatgac 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2803354 atgaaaaaatgtgataccaacaccaacggcaacaattgtaggttaaaagtctcacattgtttaaagaagtggaggttgaacattctataaaagagatgac 2803255  T
Q  218 ccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtccaactcacttgtcttgtggctctgggccaaatgtgggtgaatggtgatcccc 313  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2803254 ccataaacttaatgtcttaacgttttgggtaaaagtgtgatgtccaactcacttgtcttgtggctctgggccaaatgtgggtgaatggtgatcccc 2803159  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 33561573 - 33561499
Alignment:
Q  184 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgat 258  Q
    ||||||||||| |||| | |||||  |||| |||||||||||||| |||||||| ||||||||||| ||||||||    
T  33561573 aagtggaggttaaacactttataagtgagaggacccataaactcattgtcttaaggttttgggtaagagtgtgat 33561499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 273
Target Start/End: Original strand, 2336660 - 2336749
Alignment:
Q  184 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtccaactcacttgt 273  Q
    |||||||||||||||| | |||||  |||| |||||||||| |||||| |||||  |||||||| ||  |||| ||||||||||||||||    
T  2336660 aagtggaggttgaacactttataagtgagaggacccataaattcaatgccttaagattttgggttaagatgtggtgtccaactcacttgt 2336749  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 256
Target Start/End: Original strand, 30312825 - 30312897
Alignment:
Q  184 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtg 256  Q
    |||||||||||||||| | |||||   |||||||||||||||| | |  ||||| ||||||||||||||||||    
T  30312825 aagtggaggttgaacactttataacttagatgacccataaacttatttccttaaggttttgggtaaaagtgtg 30312897  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 159 - 267
Target Start/End: Original strand, 13766795 - 13766905
Alignment:
Q  159 gttaaaagtctcacattatttaaagaagtggaggttgaacattctataaaag--agatgacccataaactcaatgtcttaacgttttgggtaaaagtgtg 256  Q
    |||| |||||| ||||| |||| | |||||||||||||  ||| ||||||||  |||||||  |||||||||||| ||||| |||||| || ||| ||||    
T  13766795 gttagaagtctaacattgtttagaaaagtggaggttgattattttataaaagtgagatgactaataaactcaatgacttaaggttttgtgttaaaatgtg 13766894  T
Q  257 atgtccaactc 267  Q
     |||| |||||    
T  13766895 gtgtctaactc 13766905  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 25390359 - 25390305
Alignment:
Q  215 gacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtccaactcac 269  Q
    |||||||||||  | |||||||| |||||||||| ||||||| ||||||||||||    
T  25390359 gacccataaacctattgtcttaaggttttgggtagaagtgtggtgtccaactcac 25390305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 286
Target Start/End: Complemental strand, 29873659 - 29873557
Alignment:
Q  184 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtccaactcacttgtcttgtggctc 283  Q
    |||||||||||||||||| |||||  | || ||| |||||||||| || ||||| |||||| |||| ||||||| |||   ||||||||| | || ||||    
T  29873659 aagtggaggttgaacattttataagtgggaggactcataaactcattgccttaaggttttgagtaagagtgtgacgtctctctcacttgtgtggttgctc 29873560  T
Q  284 tgg 286  Q
    |||    
T  29873559 tgg 29873557  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 36005971 - 36005930
Alignment:
Q  215 gacccataaactcaatgtcttaacgttttgggtaaaagtgtg 256  Q
    |||||||||||||| || ||||| ||||||||||||||||||    
T  36005971 gacccataaactcattgccttaaggttttgggtaaaagtgtg 36005930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 31468841 - 31468797
Alignment:
Q  215 gacccataaactcaatgtcttaacgttttgggtaaaagtgtgatg 259  Q
    |||||||||||||| || ||||| ||||||||||| |||||||||    
T  31468841 gacccataaactcattgccttaaggttttgggtaagagtgtgatg 31468797  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 270
Target Start/End: Complemental strand, 10351325 - 10351207
Alignment:
Q  154 tgtaggttaaaagtctcacattatttaaagaagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaa--cgttttgggtaaaa 251  Q
    |||| |||| ||||||||||||   |||| ||| |||||||||||||| ||||   || |||||||||||||||| ||||||||    ||||||||||||    
T  10351325 tgtaagttagaagtctcacattggctaaaaaagcggaggttgaacattttatacgtgaaatgacccataaactcattgtcttaaatatttttgggtaaaa 10351226  T
Q  252 gtgtgatgtccaactcact 270  Q
    |||||||||| | ||||||    
T  10351225 gtgtgatgtctatctcact 10351207  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 256
Target Start/End: Complemental strand, 36522018 - 36521946
Alignment:
Q  184 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtg 256  Q
    |||| ||||||||||| ||| |||| |||| |||||||||||  | || ||||| ||||||||||| ||||||    
T  36522018 aagttgaggttgaacactctttaaatgagaggacccataaaccaattgccttaaggttttgggtaagagtgtg 36521946  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 261
Target Start/End: Original strand, 8481962 - 8482039
Alignment:
Q  184 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtc 261  Q
    |||||||||||||||| | |||||| |||||||| |||||||||| || |||||  |||||||||| |||||| ||||    
T  8481962 aagtggaggttgaacactttataaatgagatgactcataaactcattgccttaagattttgggtaagagtgtggtgtc 8482039  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 273
Target Start/End: Complemental strand, 5034943 - 5034854
Alignment:
Q  184 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtccaactcacttgt 273  Q
    ||||||||||||| || | |||||  |||||||||||| |||||||||| |||| ||||||| ||||| | || ||| ||| ||||||||    
T  5034943 aagtggaggttgaccactttataagtgagatgacccatcaactcaatgttttaaggttttggataaaaatatggtgtacaattcacttgt 5034854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 27226716 - 27226675
Alignment:
Q  184 aagtggaggttgaacattctataaaagagatgacccataaac 225  Q
    ||||||||||||| |||| |||||| ||||||||||||||||    
T  27226716 aagtggaggttgatcattttataaatgagatgacccataaac 27226675  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 256
Target Start/End: Original strand, 6071168 - 6071240
Alignment:
Q  184 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtg 256  Q
    |||||||||||||||| | |||||  ||||||| ||||||||||| || |||||  |||||| ||| ||||||    
T  6071168 aagtggaggttgaacactttataagtgagatgatccataaactcattgccttaagattttggataagagtgtg 6071240  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 219 - 271
Target Start/End: Original strand, 7192786 - 7192838
Alignment:
Q  219 cataaactcaatgtcttaacgttttgggtaaaagtgtgatgtccaactcactt 271  Q
    ||||||||||||||||||| |||||| |||||  |||||||||||||||||||    
T  7192786 cataaactcaatgtcttaaggttttgagtaaagatgtgatgtccaactcactt 7192838  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 21619136 - 21619095
Alignment:
Q  215 gacccataaactcaatgtcttaacgttttgggtaaaagtgtg 256  Q
    ||||||||||| || |||||||| ||||||||||||||||||    
T  21619136 gacccataaacccattgtcttaaggttttgggtaaaagtgtg 21619095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 189 - 273
Target Start/End: Original strand, 41857465 - 41857549
Alignment:
Q  189 gaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtccaactcacttgt 273  Q
    |||||| |||||| |||||| || |  |||||||||||||||| ||||| ||||||||| ||  |||||||| ||||||||||||    
T  41857465 gaggtttaacattttataaatgataacacccataaactcaatgacttaaagttttgggttaagatgtgatgttcaactcacttgt 41857549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 260846 - 260805
Alignment:
Q  184 aagtggaggttgaacattctataaaagagatgacccataaac 225  Q
    ||||||||||||| |||| |||||| ||||||||||||||||    
T  260846 aagtggaggttgatcattttataaatgagatgacccataaac 260805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 32930698 - 32930775
Alignment:
Q  159 gttaaaagtctcacattatttaaagaagtggaggttgaacattctataaaagagatgacccataaactcaatgtctta 236  Q
    |||| |||||| | ||| |||| | |||| || |||||||||| |||||  |||||||| ||||||||||||||||||    
T  32930698 gttagaagtcttatattgtttagaaaagtagaagttgaacattttataagtgagatgactcataaactcaatgtctta 32930775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 297
Target Start/End: Original strand, 40991764 - 40991902
Alignment:
Q  159 gttaaaagtctcacattatttaaagaagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgat 258  Q
    |||| ||||| ||||||  ||| | |||||||||||||||| |  ||||  |||| ||||||||||| ||||| || || ||||||||| ||  |||| |    
T  40991764 gttagaagtcccacattgcttagaaaagtggaggttgaacacttcataagtgagaggacccataaacccaatgcctcaaggttttgggttaagatgtggt 40991863  T
Q  259 gtccaactcacttgtcttgtggctctgggccaaatgtgg 297  Q
    ||||||||||| ||| | || ||||| |||| |||||||    
T  40991864 gtccaactcacctgtgtggttgctctaggcccaatgtgg 40991902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 273
Target Start/End: Complemental strand, 30737714 - 30737651
Alignment:
Q  210 gagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtccaactcacttgt 273  Q
    |||| ||||||||||| ||||||| ||| ||||||||| |||||| | ||||||||||| ||||    
T  30737714 gagaggacccataaacccaatgtcataaggttttgggttaaagtgcggtgtccaactcaattgt 30737651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 261
Target Start/End: Complemental strand, 4154402 - 4154326
Alignment:
Q  184 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtc 261  Q
    |||||||||||||||| | |||||  |||| |||||||||||||| || |||||  ||||||||||  ||||||||||    
T  4154402 aagtggaggttgaacactttataagtgaga-gacccataaactcattgccttaatattttgggtaagtgtgtgatgtc 4154326  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 273
Target Start/End: Original strand, 11442915 - 11442979
Alignment:
Q  210 gagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtccaa-ctcacttgt 273  Q
    |||| ||||||||||||||||| ||||| ||||||||| ||  |||| ||||||| |||||||||    
T  11442915 gagaggacccataaactcaatgccttaaggttttgggtgaatatgtggtgtccaatctcacttgt 11442979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 237
Target Start/End: Original strand, 42480533 - 42480611
Alignment:
Q  159 gttaaaagtctcacattatttaaagaagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaa 237  Q
    ||||||||||||| | ||||| || |||||||||||||||| | | |||  ||||||| |||||||||| |||||||||    
T  42480533 gttaaaagtctcatactatttgaaaaagtggaggttgaacaatatgtaagtgagatgatccataaactcgatgtcttaa 42480611  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 261
Target Start/End: Complemental strand, 22028458 - 22028412
Alignment:
Q  215 gacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtc 261  Q
    |||||||||||||| |||||||| ||||||||||| |||||| ||||    
T  22028458 gacccataaactcattgtcttaatgttttgggtaagagtgtggtgtc 22028412  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 273
Target Start/End: Original strand, 23630348 - 23630429
Alignment:
Q  192 gttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtccaactcacttgt 273  Q
    |||||||| | |||||  |||| ||| ||||||||||| |||||||   |||||||||||||||||| |||  |||||||||    
T  23630348 gttgaacactttataagtgagacgactcataaactcaacgtcttaagactttgggtaaaagtgtgatttccctctcacttgt 23630429  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 256
Target Start/End: Original strand, 34544142 - 34544215
Alignment:
Q  184 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacg-ttttgggtaaaagtgtg 256  Q
    ||||||||||||| || | |||||| |||| |||||||||||||| || ||||| | |||||||||| ||||||    
T  34544142 aagtggaggttgatcactttataaatgagaggacccataaactcattgccttaaggtttttgggtaagagtgtg 34544215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 297
Target Start/End: Complemental strand, 41603311 - 41603198
Alignment:
Q  184 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtccaactcacttgtcttgtggctc 283  Q
    ||||||||||||| || | |||||  |||| |||||||||||  | |||||||| ||||||||||||  | || ||| ||| |||||||| | || |||     
T  41603311 aagtggaggttgagcactttataagtgagaagacccataaacatagtgtcttaaggttttgggtaaagatttggtgtacaattcacttgtatggttgctt 41603212  T
Q  284 tgggccaaatgtgg 297  Q
    |||||| |||||||    
T  41603211 tgggcccaatgtgg 41603198  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 297
Target Start/End: Complemental strand, 30576705 - 30576592
Alignment:
Q  184 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtccaactcacttgtcttgtggctc 283  Q
    |||| ||||||||||| | ||| |  |||| |||||||| ||  |||||||||| ||||||||||||| ||| |||||   ||||||||| |||| ||||    
T  30576705 aagtagaggttgaacactttatgagtgagaggacccatagacataatgtcttaatgttttgggtaaaaatgtaatgtctctctcacttgtgttgttgctc 30576606  T
Q  284 tgggccaaatgtgg 297  Q
    || ||| |||||||    
T  30576605 tgagcccaatgtgg 30576592  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 256
Target Start/End: Complemental strand, 1188710 - 1188638
Alignment:
Q  184 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtg 256  Q
    |||||||||||||| ||| |||||  |||| ||| |||||||||| ||  |||| ||||||||||||||||||    
T  1188710 aagtggaggttgaatattttataagtgagaagactcataaactcattgctttaaggttttgggtaaaagtgtg 1188638  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 261
Target Start/End: Complemental strand, 32594807 - 32594761
Alignment:
Q  215 gacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtc 261  Q
    |||||||||||||| |||||||| ||||||||||| |||||| ||||    
T  32594807 gacccataaactcattgtcttaaggttttgggtaagagtgtggtgtc 32594761  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 257
Target Start/End: Complemental strand, 1187486 - 1187413
Alignment:
Q  184 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtga 257  Q
    ||||||||||| |||||| |||||  |||| |||||||||||||| |  |||||  ||||| ||||||||||||    
T  1187486 aagtggaggttaaacattttataagtgagaagacccataaactcattaccttaagattttgagtaaaagtgtga 1187413  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 297
Target Start/End: Original strand, 30208188 - 30208276
Alignment:
Q  210 gagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtcc-aactcacttgtcttgtggctctgggccaaatgtgg 297  Q
    |||| ||||| |||||||||||  |||| ||||||||| |||||||| ||||| |||||||||| |  || |||||| ||| |||||||    
T  30208188 gagaggacccttaaactcaatgcattaaggttttgggttaaagtgtggtgtccaaactcacttgccaggttgctctgagcccaatgtgg 30208276  T

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