View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19315_low_9 (Length: 298)
Name: NF19315_low_9
Description: NF19315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19315_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 2948437 - 2948156
Alignment:
| Q |
1 |
tttgtgatctatgtaaatcgatgccacttgtggacaattatggacttataattaaggaaagagatggagttcttctgcctgcaaatgtgagcaaatgggc |
100 |
Q |
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| T |
2948437 |
tttgtgatctatgtaaatcgatgccacttgtggacaattatggacttataattaaggaaagagatggagttcttctgcctgcaaatgtgagcaaatgggc |
2948338 |
T |
|
| Q |
101 |
acaattgactaattctgatccatggatagatgagaattatgttgagctaggaaaggtgtacctaaaggcatcttcttatgcaggccaatgtacagattct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2948337 |
acaattgactaattctgatccatggatagatgagaattatgttgagctaggaaaggtgtacctaaaggcatcttcttatgcaggccaatgtacagattct |
2948238 |
T |
|
| Q |
201 |
gagatgtttattgctttcctcaaaagccatgttaaagcttccgacatccctttcatacatcctccaaatgcagggttgtcag |
282 |
Q |
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| T |
2948237 |
gagatgtttattgctttcctcaaaagccatgttaaagcttccgacatcccttttatacatcctccaaatgctgggttgtcag |
2948156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 21 - 271
Target Start/End: Original strand, 3010994 - 3011244
Alignment:
| Q |
21 |
atgccacttgtggacaattatggacttataattaaggaaagagatggagttcttctgcctgcaaatgtgagcaaatgggcacaattgactaattctgatc |
120 |
Q |
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||||||||||||||||| | ||||| ||||| ||| ||| |||| ||||||||||||||||||||||||||||||||| | |||| | |||| ||| |
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| T |
3010994 |
atgccacttgtggacaaatttggacgtataactaaaagcagaaatggggttcttctgcctgcaaatgtgagcaaatgggcagacttgattggttctaatc |
3011093 |
T |
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| Q |
121 |
catggatagatgagaattatgttgagctaggaaaggtgtacctaaaggcatcttcttatgcaggccaatgtacagattctgagatgtttattgctttcct |
220 |
Q |
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| T |
3011094 |
catggagaaatgaaaattatgttgagctaggaaaggcatacctaaatgattcttcttatgcaggccaacatatggattctgggaaatttattgaattcct |
3011193 |
T |
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| Q |
221 |
caaaagccatgttaaagcttccgacatccctttcatacatcctccaaatgc |
271 |
Q |
| |
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||||| |||||||||||||| ||||| |||| ||| |||||||||||| |
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| T |
3011194 |
caaaactcatgttaaagcttctgacataccttatatatctcctccaaatgc |
3011244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 21 - 282
Target Start/End: Complemental strand, 2931767 - 2931509
Alignment:
| Q |
21 |
atgccacttgtggacaattatggacttataattaaggaaagagatggagttcttctgcctgcaaatgtgagcaaatgggcacaattgactaattctgatc |
120 |
Q |
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||||||||||||||||| |||||| ||||| ||| ||| |||| ||||||||||||| |||||| |||||||||||| | || | |||| ||| |
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| T |
2931767 |
atgccacttgtggacaagaatggacgtataactaaaagtagaaatggtgttcttctgcctgaaaatgttagcaaatgggcagacttaatggtttctaatc |
2931668 |
T |
|
| Q |
121 |
catggatagatgagaattatgttgagctaggaaaggtgtacctaaaggcatcttcttatgcaggccaatgtacagattctgagatgtttattgctttcct |
220 |
Q |
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| T |
2931667 |
catggagaaaagaaaattatgttgagctaggaaagatgtacctaaatgca---tcttatgcagaccaatctacagattctgggaagcttattgaattcct |
2931571 |
T |
|
| Q |
221 |
caaaagccatgttaaagcttccgacatccctttcatacatcctccaaatgcagggttgtcag |
282 |
Q |
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||||| |||||| |||||| ||||| |||| || |||||||||||| ||||| |||| |
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| T |
2931570 |
caaaaatcatgttggagcttctgacataccttatctatctcctccaaatgctgggttttcag |
2931509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 277
Target Start/End: Complemental strand, 2922387 - 2922169
Alignment:
| Q |
59 |
aagagatggagttcttctgcctgcaaatgtgagcaaatgggcacaattgactaattctgatccatggatagatgagaattatgttgagctaggaaaggtg |
158 |
Q |
| |
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|||| |||| |||||| ||||||||||| |||||||||||||| | |||| | |||| |||| |||| |||| |||||||| ||||| ||||| | |
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| T |
2922387 |
aagaaatggggttcttgtgcctgcaaatatgagcaaatgggcagacttgattgtttctaatccttggaggaatgaaaattatgtcgagcttggaaatgat |
2922288 |
T |
|
| Q |
159 |
tacctaaaggcatcttcttatgcaggccaatgtacagattctgagatgtttattgctttcctcaaaagccatgttaaagcttccgacatccctttcatac |
258 |
Q |
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|||||||| |||| ||| ||||||| |||| ||||| ||| |||||| | ||| |||||||| || |||||| |||||| ||||| |||| ||| |
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| T |
2922287 |
tacctaaattcatcatctcatgcaggtcaatttacaggttccgagatgctaattaatttcctcacaactcatgttggagcttctgacataccttatatat |
2922188 |
T |
|
| Q |
259 |
atcctccaaatgcagggtt |
277 |
Q |
| |
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|||||||||||| ||||| |
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| T |
2922187 |
ctcctccaaatgctgggtt |
2922169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 247
Target Start/End: Complemental strand, 37797226 - 37797048
Alignment:
| Q |
69 |
gttcttctgcctgcaaatgtgagcaaatgggcacaattgactaattctgatccatggatagatgagaattatgttgagctaggaaaggtgtacctaaagg |
168 |
Q |
| |
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|||||| ||||||||||||| |||||||||||| | || | | |||| |||| |||| | || |||||||||||||| ||||||| ||||||||| |
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| T |
37797226 |
gttcttgtgcctgcaaatgttagcaaatgggcagacttaattgtttctaatccttggaggaaggaaaattatgttgagctcggaaaggagtacctaaata |
37797127 |
T |
|
| Q |
169 |
catcttcttatgcaggccaatgtacagattctgagatgtttattgctttcctcaaaagccatgttaaagcttccgacat |
247 |
Q |
| |
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| || |||||||||||||||| ||||| ||| | | | |||||| |||||||| || |||||| ||||||| ||||| |
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| T |
37797126 |
cctcatcttatgcaggccaatttacaggttccggaaagcttattgatttcctcacaactcatgttgaagcttctgacat |
37797048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 282
Target Start/End: Original strand, 4915041 - 4915321
Alignment:
| Q |
5 |
tgatctatgtaaatcgatgccacttgtggacaattatggacttataattaaggaaagagatggagttcttctgcctgcaaatgtgagcaaatgggcacaa |
104 |
Q |
| |
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||||||||||||||| ||||||||||||||||| |||||| ||||| ||| ||| | | |||||| |||||||||||||||||||||||||| |
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| T |
4915041 |
tgatctatgtaaatctatgccacttgtggacaactatggaagtataactaaaagcagacaagaggttcttgtgcctgcaaatgtgagcaaatgggcaggc |
4915140 |
T |
|
| Q |
105 |
ttgactaattctg---atccatggatagatgagaattatgttgagctaggaaaggtgtacctaaaggcatcttcttatgcaggccaatgtacagattctg |
201 |
Q |
| |
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|||| | |||| ||||||||| |||| ||||| | ||||||||||||| ||||||||| |||||||||||||||||||||| |||||||| || |
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| T |
4915141 |
ttgattgtttcttctaatccatggacttatgaaaattacatcgagctaggaaaggcgtacctaaatgcatcttcttatgcaggccaatatacagattatg |
4915240 |
T |
|
| Q |
202 |
agatgtttattgctttcctcaaaagccatgttaaagcttccgacatccctttcatacatcctccaaatgcagggttgtcag |
282 |
Q |
| |
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|| | |||||| ||||||||||| ||||||| |||||||||||| |||| ||| |||||||||||| ||||| |||| |
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| T |
4915241 |
ggaagcttattggtttcctcaaaacccatgttggagcttccgacataccttatatatctcctccaaatgctgggttttcag |
4915321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 66 - 282
Target Start/End: Original strand, 1505351 - 1505567
Alignment:
| Q |
66 |
ggagttcttctgcctgcaaatgtgagcaaatgggcacaattgactaattctgatccatggatagatgagaattatgttgagctaggaaaggtgtacctaa |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||| | |||| ||||||||| | |||| ||||||||| |||||||||| |||||||| |
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| T |
1505351 |
ggagttcttctgcctgcaaatgtgagcaaatgggctgacttgattgtttctaatccatggagaaatgaaggttatgttgaactaggaaaggcgtacctaa |
1505450 |
T |
|
| Q |
166 |
aggcatcttcttatgcaggccaatgtacagattctgagatgtttattgctttcctcaaaagccatgttaaagcttccgacatccctttcatacatcctcc |
265 |
Q |
| |
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| T |
1505451 |
atgcatcttcttatgcaggtcaaaattcaagctctaggatgcttattgatttcctcaaagcccatgttagagcttccgatgtaccttacatatctcctcc |
1505550 |
T |
|
| Q |
266 |
aaatgcagggttgtcag |
282 |
Q |
| |
|
|||||| ||||| |||| |
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| T |
1505551 |
aaatgctgggttttcag |
1505567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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