View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19316_high_12 (Length: 378)
Name: NF19316_high_12
Description: NF19316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19316_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 202 - 359
Target Start/End: Original strand, 52878733 - 52878890
Alignment:
| Q |
202 |
cacatccattgcttccattttttagttatttggtctcggtctacttccccttctatttgcttgtattctcggatctctaacacaattttcttcctcgtta |
301 |
Q |
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| T |
52878733 |
cacatccattgcttccattttttagttatttggtctcggtctacttccccttctatttgcttgtattctcggatctctaacacaattttcttcctcgtta |
52878832 |
T |
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| Q |
302 |
caattttttagttatttagttatttgtttgtgatcaacatggatcacatatatttaac |
359 |
Q |
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| T |
52878833 |
caattttttagttatttagttatttgtttgtgatcaacatggatcacatatatttaac |
52878890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 20 - 177
Target Start/End: Complemental strand, 52878890 - 52878733
Alignment:
| Q |
20 |
gttaaatatatgtgatccatgttgatcacaaacaaataactaaataactaaaaaattgtaacgaggaagaaaattgtgttagagatccgagaatacaagc |
119 |
Q |
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| T |
52878890 |
gttaaatatatgtgatccatgttgatcacaaacaaataactaaataactaaaaaattgtaacgaggaagaaaattgtgttagagatccgagaatacaagc |
52878791 |
T |
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| Q |
120 |
aaatagaaggggaagtagaccgagaccaaataactaaaaaatggaagcaatggatgtg |
177 |
Q |
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| T |
52878790 |
aaatagaaggggaagtagaccgagaccaaataactaaaaaatggaagcaatggatgtg |
52878733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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