View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19316_high_14 (Length: 337)
Name: NF19316_high_14
Description: NF19316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19316_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 15 - 320
Target Start/End: Complemental strand, 48268239 - 48267934
Alignment:
| Q |
15 |
acatcatcaagacaagcaatcgaaaccaaagcatcgagatcctcctcaggtaactgatacttaatagctacaggttgtccgtaagtatcaaccattttct |
114 |
Q |
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| T |
48268239 |
acatcatcgggacaagcaatcgaaaccaaagcatcgagatcctcctcaggtaactgatacttaatagctacaggttgtccgtaagtatcaaccattttct |
48268140 |
T |
|
| Q |
115 |
gcaccaaatcattaaaactcacatttttcttaacactaattatccttgtttgtccaccaacatatctcaacacgccatcactaggcctgggcaaaatctt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
48268139 |
gcaccaaatcattaaaactcacatttttcttaacactaattatccttgtttgtccaccaacatatctcaacacgccatcactaggcctaggcaaaatctt |
48268040 |
T |
|
| Q |
215 |
cccaccaaaactacacaaaaacttaactttcctacccgaatttgaatcatcgctggtctcgtcaacagacctagttccaccattaccaccataagtataa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48268039 |
cccaccaaaactacacaaaaacttaactttcctacccgaatttgaatcatcgctggtctcgtcaacagacctagttccaccattaccaccataagtataa |
48267940 |
T |
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| Q |
315 |
ccattt |
320 |
Q |
| |
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|||||| |
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| T |
48267939 |
ccattt |
48267934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 26 - 238
Target Start/End: Complemental strand, 25239998 - 25239786
Alignment:
| Q |
26 |
acaagcaatcgaaaccaaagcatcgagatcctcctcaggtaactgatacttaatagctacaggttgtccgtaagtatcaaccattttctgcaccaaatca |
125 |
Q |
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||||| || ||| ||||| ||||| |||||||| |||| | |||||| || || | |||||||| || ||||||||||||| || |||||||||||| |
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| T |
25239998 |
acaagaaaccgagaccaatgcatcaagatcctcaccaggaagctgatatttgatgacaacaggttggccaaaagtatcaaccatcttttgcaccaaatca |
25239899 |
T |
|
| Q |
126 |
ttaaaactcacatttttcttaacactaattatccttgtttgtccaccaacatatctcaacacgccatcactaggcctgggcaaaatcttcccaccaaaac |
225 |
Q |
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||||||||||||||| |||||||||| |||||||| || || ||||||||||| ||||||| ||||||||||| || || ||||| |||||||| ||| |
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| T |
25239898 |
ttaaaactcacatttctcttaacacttattatcctagtctgcccaccaacatacctcaacaatccatcactaggtctaggataaatcctcccaccataac |
25239799 |
T |
|
| Q |
226 |
tacacaaaaactt |
238 |
Q |
| |
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|||||| |||||| |
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| T |
25239798 |
tacacataaactt |
25239786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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