View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19316_high_20 (Length: 202)
Name: NF19316_high_20
Description: NF19316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19316_high_20 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 134; Significance: 6e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 25828383 - 25828584
Alignment:
| Q |
1 |
ctatagacactttttacataatattcaccatccttttcagcttttcaaatcaatttgtcatctgacacctaatcaaatatatcgcaaaatactagaagca |
100 |
Q |
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| T |
25828383 |
ctatatacactttttacataatactcgccatccttttcagctttccaaatcaatttatcatctgacacctaatcaaatatatcgcaaaatactagaagca |
25828482 |
T |
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| Q |
101 |
atatccgggctaaaaacttgattaatcaaatcatggttccataccttatgcgcaggaactatcggactagcaacacaaaaattacgaagatggtatgtgt |
200 |
Q |
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| T |
25828483 |
atattcgggctaaaaacatgatgaatcaaatcatggttccatacctttcgcgtaggaaccatcagactagcaacagaaaaattacaaacatggtatatgt |
25828582 |
T |
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| Q |
201 |
tt |
202 |
Q |
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|| |
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| T |
25828583 |
tt |
25828584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 88
Target Start/End: Original strand, 25430617 - 25430656
Alignment:
| Q |
49 |
atcaatttgtcatctgacacctaatcaaatatatcgcaaa |
88 |
Q |
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| T |
25430617 |
atcaatttgtcatctgacacctaatcaaacatatcgcaaa |
25430656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 14230062 - 14230003
Alignment:
| Q |
8 |
cactttttacataatattcaccatccttttcagcttttcaaatcaatttgtcatctgaca |
67 |
Q |
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| T |
14230062 |
cactttttagagaatactcaccatccttttcagcttttcagatcaatttgtcatctgaca |
14230003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 25983578 - 25983546
Alignment:
| Q |
7 |
acactttttacataatattcaccatccttttca |
39 |
Q |
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| T |
25983578 |
acactttttacataatactcaccatccttttca |
25983546 |
T |
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