View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19316_high_7 (Length: 413)
Name: NF19316_high_7
Description: NF19316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19316_high_7 |
 | |
|
| [»] scaffold0135 (7 HSPs) |
| | |
|
| [»] scaffold0959 (1 HSPs) |
| | |
|
| [»] scaffold0753 (3 HSPs) |
| | |
|
| [»] scaffold0091 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 9275577 - 9275979
Alignment:
| Q |
1 |
acttcaatattatatgcgtggagattctatcgtaaaatacttaggacgattcaagagtttcccatcactattcaagataagaatagaaatcaagcaaagc |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9275577 |
acttcaatattatatgcatggagattctatagtaaaatacttaggacgattcaagagtttcccatcactattcaagataagaatagaaatcaagcaaagc |
9275676 |
T |
|
| Q |
101 |
aatttcgacattgagaaaggtttttcatgtctctaatagaacattctcgtcacagaataatccttgtgaagacgataatcttaatactaaattacttaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9275677 |
aatttcgacattgagaaaggtttttcatgtctctaatagaacattctcgtcacagaataatccttgtgaagacgataatcttaatactaaattacttaag |
9275776 |
T |
|
| Q |
201 |
caattggtgcacttgccagatttatcatcatctttcaaaattttgtttaaac--agtannnnnnncgattttagacaagatggttttgacttaaaactag |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9275777 |
caattggtgcacttgccagatttatcatcatctttcaaaattttgtttaaacatagtattgttttcgattttagacaagatggttttgacttaaaactag |
9275876 |
T |
|
| Q |
299 |
taaacacacttaaaagctaacc-nnnnnnnnnnnnnnnnnctacctacattatacctaaaagtgaacaaagtcttccatttcaattttggcgatgttgaa |
397 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9275877 |
taaacacacttaaaaactaacctttttttatagattttttctacctacattatacctaaaagtgaacaaagtcttccatttcaattttggcgatgttgaa |
9275976 |
T |
|
| Q |
398 |
ttt |
400 |
Q |
| |
|
||| |
|
|
| T |
9275977 |
ttt |
9275979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 9208390 - 9208793
Alignment:
| Q |
1 |
acttcaatattatatgcgtggagattctatcgtaaaatacttaggacgattcaagagtttcccatcactattcaagataagaatagaaatcaagcaaagc |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9208390 |
acttcaatattatatgcatggagattctatagtaaaatacttaggacgattcaagagtttcccatcactattcaagataagaatagaaataaagcaaagc |
9208489 |
T |
|
| Q |
101 |
aatttcgacattgagaaaggtttttcatgtctctaatagaacattctcgtcacagaataatccttgtgaagacgataatcttaatactaaattacttaag |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||| |
|
|
| T |
9208490 |
aatttcgacattgagaaaagtttttcatgtctctaatagaacattctcgtcacagaataatccttgcggagacgataatcttactactaaattacttaag |
9208589 |
T |
|
| Q |
201 |
caattggtgcacttgccagatttatcatcatctttcaaaattttgtttaaac--agtannnnnnncgattttagacaagatggttttgacttaaaactag |
298 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9208590 |
cagttggtgcatttgccagatttatcatcatctttcaaaattttgtttaaacagagtattgttttcgattttagacaagatggttttgacttaaaactag |
9208689 |
T |
|
| Q |
299 |
taaacacacttaaaagctaacc-nnnnnnnnnnnnnnnnnctacctacattatacctaaaagtgaacaaagtcttccatttcaattttggcgatgttgaa |
397 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||| |
|
|
| T |
9208690 |
taaacacacttaaaaactaacctttttttttagattttttctacctacattatacctaaaagtgaacaaagtcttcaatttcaattttggcaaagttgaa |
9208789 |
T |
|
| Q |
398 |
tttg |
401 |
Q |
| |
|
|||| |
|
|
| T |
9208790 |
tttg |
9208793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 9204171 - 9204570
Alignment:
| Q |
1 |
acttcaatattatatgcgtggagattctatcgtaaaatacttaggacgattcaagagtttcccatcactattcaagataagaatagaaatcaagcaaagc |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9204171 |
acttcaatattatatgcatggagattctatagtaaaatacttaggacgattcaagagtttcccatcactattcaagataagaatagaaataaagcaaagc |
9204270 |
T |
|
| Q |
101 |
aatttcgacattgagaaaggtttttcatgtctctaatagaacattctcgtcacagaataatccttgtgaagacgataatcttaatactaaattacttaag |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||| |||||| |||||||||||||||| |
|
|
| T |
9204271 |
aatttcgacattgagaaaagtttttcatgtctcttatagaacattctcgtcacagaataatccttgcggagacgattatcttactactaaattacttaag |
9204370 |
T |
|
| Q |
201 |
caattggtgcacttgccagatttatcatcatctttcaaaattttgtttaaac--agtannnnnnncgattttagacaagatggttttgacttaaaactag |
298 |
Q |
| |
|
|| |||||||| || ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9204371 |
cagttggtgcatttaccagatttatcatcatctttcaaaattttgtttaaacatagtattgttttcgattttagacaagatggttttgacttaaaactag |
9204470 |
T |
|
| Q |
299 |
taaacacacttaaaagctaacc-nnnnnnnnnnnnnnnnnctacctacattatacctaaaagtgaacaaagtcttccatttcaattttggcgatgttgaa |
397 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9204471 |
taaacacacttaaaaactaacctttttttatagattttttctacctacattatacctaaaagtgaacaaagtcttcaatttcaattttggcgatgttgaa |
9204570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 79 - 254
Target Start/End: Original strand, 9244082 - 9244249
Alignment:
| Q |
79 |
aagaatagaaatcaagcaaagcaatttcgacattgagaaaggtttttcatgtctctaatagaacattctcgtcacagaataatccttgtgaagacgataa |
178 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||| |||| ||||||||||||||| | || |||| ||| |||||||||| |
|
|
| T |
9244082 |
aagaatagaaatcaaacaaagcaattttgacattgagaaaggtttctcat---------agaacattctcgtcatacaacaatcattgcaaagacgataa |
9244172 |
T |
|
| Q |
179 |
tcttaatactaaattacttaagcaatt-ggtgcacttgccagatttatcatcatctttcaaaattttgtttaaacag |
254 |
Q |
| |
|
|||||||| |||||||||||| || || ||||||||| ||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9244173 |
tcttaataataaattacttaatcagtttggtgcactttccaaatttatcatcatctttcaaaattttgtttgaacag |
9244249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 128 - 320
Target Start/End: Original strand, 9286046 - 9286240
Alignment:
| Q |
128 |
tgtctctaatagaacattctcgtcacagaataatccttgtgaagacgataatcttaatactaaattacttaagcaattg-gtgcacttgccagatttatc |
226 |
Q |
| |
|
||||||||||||||| || || ||| | || |||||||||| | |||||||||||| || |||||||||||| || || ||||| |||||| ||||||| |
|
|
| T |
9286046 |
tgtctctaatagaac-ttatcatcatacaacaatccttgtgtacacgataatcttactattaaattacttaaacattttcgtgcatttgccaaatttatc |
9286144 |
T |
|
| Q |
227 |
atcatctttcaaaattttgttt--aaacagtannnnnnncgattttagacaagatggttttgacttaaaactagtaaacacacttaaaagctaacc |
320 |
Q |
| |
|
|||||||||||||||||||||| | | |||| | ||||||||||| ||||||||||||| |||||| ||||||| |||||| |||||| |
|
|
| T |
9286145 |
atcatctttcaaaattttgtttgaatagagtattattttcaattttagacaaaatggttttgactttaaactaacaaacacaattaaaaactaacc |
9286240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 79 - 145
Target Start/End: Original strand, 7580761 - 7580827
Alignment:
| Q |
79 |
aagaatagaaatcaagcaaagcaatttcgacattgagaaaggtttttcatgtctctaatagaacatt |
145 |
Q |
| |
|
||||||||||||||| ||||||||||| ||| ||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
7580761 |
aagaatagaaatcaaacaaagcaattttgactttgagaaaggtttctcatgtccctaatagaacatt |
7580827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 401
Target Start/End: Original strand, 9286330 - 9286378
Alignment:
| Q |
353 |
ctaaaagtgaacaaagtcttccatttcaattttggcgatgttgaatttg |
401 |
Q |
| |
|
||||||||| ||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
9286330 |
ctaaaagtggacaaagtattctatttcaattttggcgatgttgaatttg |
9286378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 320
Target Start/End: Original strand, 5614972 - 5615082
Alignment:
| Q |
212 |
cttgccagatttatcatcatctttcaaaattttgtttaaacag--tannnnnnncgattttagacaagatggttttgacttaaaactagtaaacacactt |
309 |
Q |
| |
|
||||||| |||||| ||||||| |||||||||||||| ||||| || ||||||||||||| |||||||| ||||||| |||||||| || || |
|
|
| T |
5614972 |
cttgccaaatttataatcatctatcaaaattttgtttgaacagcgtattgttttcgattttagacaaaatggttttaacttaaatatagtaaacgcaatt |
5615071 |
T |
|
| Q |
310 |
aaaagctaacc |
320 |
Q |
| |
|
|||| |||||| |
|
|
| T |
5615072 |
aaaaactaacc |
5615082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 386
Target Start/End: Original strand, 5615172 - 5615204
Alignment:
| Q |
354 |
taaaagtgaacaaagtcttccatttcaattttg |
386 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
5615172 |
taaaagtgaacaaagtcttctatttcaattttg |
5615204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 401
Target Start/End: Complemental strand, 5749498 - 5749450
Alignment:
| Q |
353 |
ctaaaagtgaacaaagtcttccatttcaattttggcgatgttgaatttg |
401 |
Q |
| |
|
||||||||| ||| ||||||| |||||| ||||||||||| |||||||| |
|
|
| T |
5749498 |
ctaaaagtggacagagtcttctatttcagttttggcgatgatgaatttg |
5749450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0135 (Bit Score: 257; Significance: 1e-143; HSPs: 7)
Name: scaffold0135
Description:
Target: scaffold0135; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 2254 - 2653
Alignment:
| Q |
1 |
acttcaatattatatgcgtggagattctatcgtaaaatacttaggacgattcaagagtttcccatcactattcaagataagaatagaaatcaagcaaagc |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2254 |
acttcaatattatatgcatggagattctatagtaaaatacttaggacgattcaagagtttcccatcactattcaagataagaatagaaataaagcaaagc |
2353 |
T |
|
| Q |
101 |
aatttcgacattgagaaaggtttttcatgtctctaatagaacattctcgtcacagaataatccttgtgaagacgataatcttaatactaaattacttaag |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||| |||||| |||||||||||||||| |
|
|
| T |
2354 |
aatttcgacattgagaaaagtttttcatgtctcttatagaacattctcgtcacagaataatccttgcggagacgattatcttactactaaattacttaag |
2453 |
T |
|
| Q |
201 |
caattggtgcacttgccagatttatcatcatctttcaaaattttgtttaaac--agtannnnnnncgattttagacaagatggttttgacttaaaactag |
298 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2454 |
cagttggtgcatttgccagatttatcatcatctttcaaaattttgtttaaacatagtattgttttcgattttagacaagatggttttgacttaaaactag |
2553 |
T |
|
| Q |
299 |
taaacacacttaaaagctaacc-nnnnnnnnnnnnnnnnnctacctacattatacctaaaagtgaacaaagtcttccatttcaattttggcgatgttgaa |
397 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2554 |
taaacacacttaaaaactaacctttttttatagattttttctacctacattatacctaaaagtgaacaaagtcttcaatttcaattttggcgatgttgaa |
2653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0135; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 6469 - 6868
Alignment:
| Q |
1 |
acttcaatattatatgcgtggagattctatcgtaaaatacttaggacgattcaagagtttcccatcactattcaagataagaatagaaatcaagcaaagc |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6469 |
acttcaatattatatgcatggagattctatagtaaaatacttaggacgattcaagagtttcccatcactattcaagataagaatagaaataaagcaaagc |
6568 |
T |
|
| Q |
101 |
aatttcgacattgagaaaggtttttcatgtctctaatagaacattctcgtcacagaataatccttgtgaagacgataatcttaatactaaattacttaag |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||| |||||| |||||||||||||||| |
|
|
| T |
6569 |
aatttcgacattgagaaaagtttttcatgtctcttatagaacattctcgtcacagaataatccttgcggagacgattatcttactactaaattacttaag |
6668 |
T |
|
| Q |
201 |
caattggtgcacttgccagatttatcatcatctttcaaaattttgtttaaac--agtannnnnnncgattttagacaagatggttttgacttaaaactag |
298 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6669 |
cagttggtgcatttgccagatttatcatcatctttcaaaattttgtttaaacatagtattgttttcgattttagacaagatggttttgacttaaaactag |
6768 |
T |
|
| Q |
299 |
taaacacacttaaaagctaacc-nnnnnnnnnnnnnnnnnctacctacattatacctaaaagtgaacaaagtcttccatttcaattttggcgatgttgaa |
397 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6769 |
taaacacacttaaaaactaacctttttttatagattttttctacctacattatacctaaaagtgaacaaagtcttcaatttcaattttggcgatgttgaa |
6868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0135; HSP #3
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 10684 - 11083
Alignment:
| Q |
1 |
acttcaatattatatgcgtggagattctatcgtaaaatacttaggacgattcaagagtttcccatcactattcaagataagaatagaaatcaagcaaagc |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10684 |
acttcaatattatatgcatggagattctatagtaaaatacttaggacgattcaagagtttcccatcactattcaagataagaatagaaataaagcaaagc |
10783 |
T |
|
| Q |
101 |
aatttcgacattgagaaaggtttttcatgtctctaatagaacattctcgtcacagaataatccttgtgaagacgataatcttaatactaaattacttaag |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||| |||||| |||||||||||||||| |
|
|
| T |
10784 |
aatttcgacattgagaaaagtttttcatgtctcttatagaacattctcgtcacagaataatccttgcggagacgattatcttactactaaattacttaag |
10883 |
T |
|
| Q |
201 |
caattggtgcacttgccagatttatcatcatctttcaaaattttgtttaaac--agtannnnnnncgattttagacaagatggttttgacttaaaactag |
298 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10884 |
cagttggtgcatttgccagatttatcatcatctttcaaaattttgtttaaacatagtattgttttcgattttagacaagatggttttgacttaaaactag |
10983 |
T |
|
| Q |
299 |
taaacacacttaaaagctaacc-nnnnnnnnnnnnnnnnnctacctacattatacctaaaagtgaacaaagtcttccatttcaattttggcgatgttgaa |
397 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10984 |
taaacacacttaaaaactaacctttttttatagattttttctacctacattatacctaaaagtgaacaaagtcttcaatttcaattttggcgatgttgaa |
11083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0135; HSP #4
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 14899 - 15298
Alignment:
| Q |
1 |
acttcaatattatatgcgtggagattctatcgtaaaatacttaggacgattcaagagtttcccatcactattcaagataagaatagaaatcaagcaaagc |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14899 |
acttcaatattatatgcatggagattctatagtaaaatacttaggacgattcaagagtttcccatcactattcaagataagaatagaaataaagcaaagc |
14998 |
T |
|
| Q |
101 |
aatttcgacattgagaaaggtttttcatgtctctaatagaacattctcgtcacagaataatccttgtgaagacgataatcttaatactaaattacttaag |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||| |||||| |||||||||||||||| |
|
|
| T |
14999 |
aatttcgacattgagaaaagtttttcatgtctcttatagaacattctcgtcacagaataatccttgcggagacgattatcttactactaaattacttaag |
15098 |
T |
|
| Q |
201 |
caattggtgcacttgccagatttatcatcatctttcaaaattttgtttaaac--agtannnnnnncgattttagacaagatggttttgacttaaaactag |
298 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15099 |
cagttggtgcatttgccagatttatcatcatctttcaaaattttgtttaaacatagtattgttttcgattttagacaagatggttttgacttaaaactag |
15198 |
T |
|
| Q |
299 |
taaacacacttaaaagctaacc-nnnnnnnnnnnnnnnnnctacctacattatacctaaaagtgaacaaagtcttccatttcaattttggcgatgttgaa |
397 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15199 |
taaacacacttaaaaactaacctttttttatagattttttctacctacattatacctaaaagtgaacaaagtcttcaatttcaattttggcgatgttgaa |
15298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0135; HSP #5
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 19114 - 19513
Alignment:
| Q |
1 |
acttcaatattatatgcgtggagattctatcgtaaaatacttaggacgattcaagagtttcccatcactattcaagataagaatagaaatcaagcaaagc |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19114 |
acttcaatattatatgcatggagattctatagtaaaatacttaggacgattcaagagtttcccatcactattcaagataagaatagaaataaagcaaagc |
19213 |
T |
|
| Q |
101 |
aatttcgacattgagaaaggtttttcatgtctctaatagaacattctcgtcacagaataatccttgtgaagacgataatcttaatactaaattacttaag |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||| |||||| |||||||||||||||| |
|
|
| T |
19214 |
aatttcgacattgagaaaagtttttcatgtctcttatagaacattctcgtcacagaataatccttgcggagacgattatcttactactaaattacttaag |
19313 |
T |
|
| Q |
201 |
caattggtgcacttgccagatttatcatcatctttcaaaattttgtttaaac--agtannnnnnncgattttagacaagatggttttgacttaaaactag |
298 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
19314 |
cagttggtgcatttgccagatttatcatcatctttcaaaattttgtttaaacatagtattgttttcgattttagacaagatggttttgacttaaaactag |
19413 |
T |
|
| Q |
299 |
taaacacacttaaaagctaacc-nnnnnnnnnnnnnnnnnctacctacattatacctaaaagtgaacaaagtcttccatttcaattttggcgatgttgaa |
397 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19414 |
taaacacacttaaaaactaacctttttttatagattttttctacctacattatacctaaaagtgaacaaagtcttcaatttcaattttggcgatgttgaa |
19513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0135; HSP #6
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 23329 - 23728
Alignment:
| Q |
1 |
acttcaatattatatgcgtggagattctatcgtaaaatacttaggacgattcaagagtttcccatcactattcaagataagaatagaaatcaagcaaagc |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
23329 |
acttcaatattatatgcatggagattctatagtaaaatacttaggacgattcaagagtttcccatcactattcaagataagaatagaaataaagcaaagc |
23428 |
T |
|
| Q |
101 |
aatttcgacattgagaaaggtttttcatgtctctaatagaacattctcgtcacagaataatccttgtgaagacgataatcttaatactaaattacttaag |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||| |||||| |||||||||||||||| |
|
|
| T |
23429 |
aatttcgacattgagaaaagtttttcatgtctcttatagaacattctcgtcacagaataatccttgcggagacgattatcttactactaaattacttaag |
23528 |
T |
|
| Q |
201 |
caattggtgcacttgccagatttatcatcatctttcaaaattttgtttaaac--agtannnnnnncgattttagacaagatggttttgacttaaaactag |
298 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
23529 |
cagttggtgcatttgccagatttatcatcatctttcaaaattttgtttaaacatagtattgttttcgattttagacaagatggttttgacttaaaactag |
23628 |
T |
|
| Q |
299 |
taaacacacttaaaagctaacc-nnnnnnnnnnnnnnnnnctacctacattatacctaaaagtgaacaaagtcttccatttcaattttggcgatgttgaa |
397 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23629 |
taaacacacttaaaaactaacctttttttatagattttttctacctacattatacctaaaagtgaacaaagtcttcaatttcaattttggcgatgttgaa |
23728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0135; HSP #7
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 27544 - 27943
Alignment:
| Q |
1 |
acttcaatattatatgcgtggagattctatcgtaaaatacttaggacgattcaagagtttcccatcactattcaagataagaatagaaatcaagcaaagc |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27544 |
acttcaatattatatgcatggagattctatagtaaaatacttaggacgattcaagagtttcccatcactattcaagataagaatagaaataaagcaaagc |
27643 |
T |
|
| Q |
101 |
aatttcgacattgagaaaggtttttcatgtctctaatagaacattctcgtcacagaataatccttgtgaagacgataatcttaatactaaattacttaag |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||| |||||| |||||||||||||||| |
|
|
| T |
27644 |
aatttcgacattgagaaaagtttttcatgtctcttatagaacattctcgtcacagaataatccttgcggagacgattatcttactactaaattacttaag |
27743 |
T |
|
| Q |
201 |
caattggtgcacttgccagatttatcatcatctttcaaaattttgtttaaac--agtannnnnnncgattttagacaagatggttttgacttaaaactag |
298 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
27744 |
cagttggtgcatttgccagatttatcatcatctttcaaaattttgtttaaacatagtattgttttcgattttagacaagatggttttgacttaaaactag |
27843 |
T |
|
| Q |
299 |
taaacacacttaaaagctaacc-nnnnnnnnnnnnnnnnnctacctacattatacctaaaagtgaacaaagtcttccatttcaattttggcgatgttgaa |
397 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27844 |
taaacacacttaaaaactaacctttttttatagattttttctacctacattatacctaaaagtgaacaaagtcttcaatttcaattttggcgatgttgaa |
27943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0959 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: scaffold0959
Description:
Target: scaffold0959; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 12 - 401
Target Start/End: Original strand, 2826 - 3226
Alignment:
| Q |
12 |
atatgcgtggagattctatcgtaaaatacttaggacgattcaagagtttcccatcactattcaagata---------agaatagaaatcaagcaaagcaa |
102 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||| ||| ||||||||| |||||||||||||||||| |||||| ||||||| |||| ||| |
|
|
| T |
2826 |
atatgcatggagattctatcgaaaaatacttaggatgatccaagagttttccatcactattcaagatatgatttggaagaatacaaatcaaacaaaccaa |
2925 |
T |
|
| Q |
103 |
tttcgacattgagaaaggtttttcatgtctctaatagaacattctcgtcacagaataatccttgtgaagacgataatcttaatactaaattacttaagca |
202 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||| |||||||||||||||||| |
|
|
| T |
2926 |
tttcgacattgaaaaaggtttttcatgtctctaatagaacattctcgtcacataataatccttgaggagacgataatcttactactaaattacttaagca |
3025 |
T |
|
| Q |
203 |
attggtgcacttgccagatttatcatcatctttcaaaattttgtttaaac--agtannnnnnncgattttagacaagatggttttgacttaaaactagta |
300 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||| || |||||||||||||||||||| |
|
|
| T |
3026 |
gttggtacacttgccagatctatcatcatctttcaaaattttgtttaaacaaagtattgttttcgattttagacaaaattgttttgacttaaaactagta |
3125 |
T |
|
| Q |
301 |
aacacacttaaaagctaaccnnnnnnnnnnnnnnnnnctacctacattatacctaaaagtgaacaaagtcttccatttcaattttggcgatgttgaattt |
400 |
Q |
| |
|
||||||||||||| |||||| |||||||| ||||||||||||||||||||| | || |||||||||||||| ||||||||||| |
|
|
| T |
3126 |
aacacacttaaaaactaacctttttttatctttttttctacctactttatacctaaaagtgaacaaactattaaatttcaattttggcaatgttgaattt |
3225 |
T |
|
| Q |
401 |
g |
401 |
Q |
| |
|
| |
|
|
| T |
3226 |
g |
3226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0753 (Bit Score: 172; Significance: 3e-92; HSPs: 3)
Name: scaffold0753
Description:
Target: scaffold0753; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 942 - 532
Alignment:
| Q |
1 |
acttcaatattatatgcgtggagattctatcgtaaaatacttaggacgattcaagagtttcccatcactattcaagata---------agaatagaaatc |
91 |
Q |
| |
|
|||||| ||| |||||| |||| ||||||||||||||||||||||| ||| ||||||||| |||||| |||||| ||| |||||| ||||| |
|
|
| T |
942 |
acttcattatcatatgcatggatattctatcgtaaaatacttaggatgatccaagagttttacatcaccattcaatatatgatttggaagaataaaaatc |
843 |
T |
|
| Q |
92 |
aagcaaagcaatttcgacattgagaaaggtttttcatgtctctaatagaacattctcgtcacagaataatccttgtgaagacgataatcttaatactaaa |
191 |
Q |
| |
|
|| || |||||||| || |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
842 |
aaacagagcaattttgagattgaggaaggtttttcatgtctctaatagaacattctcgtcacaaaataatccttgtggagacgataatcttgatactaaa |
743 |
T |
|
| Q |
192 |
ttacttaagcaattggtgcacttgccagatttatcatcatctttcaaaattttgtttaaac--agtannnnnnncgattttagacaagatggttttgact |
289 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||| |||| ||||||||||||| |||||||||||| |
|
|
| T |
742 |
ttacttaagcagttggtgcacttgccagatttgtcatcatgtttcaaaattttgtttaaacaaagtatagttttcgattttagacaaaatggttttgact |
643 |
T |
|
| Q |
290 |
taaaactagtaaacacacttaaaagctaaccnnnnnnnnnnnnnnnnnctacctacattatacctaaaagtgaacaaagtcttccatttcaattttggcg |
389 |
Q |
| |
|
|||| ||| |||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||| |||||||||||| || |
|
|
| T |
642 |
taaatctaaaaaacacacttaaaaactaacc-tttttttaacttttttctacctacattatacctaaaagtgaataaagtcttcaatttcaattttgacg |
544 |
T |
|
| Q |
390 |
atgttgaatttg |
401 |
Q |
| |
|
|||||||||||| |
|
|
| T |
543 |
atgttgaatttg |
532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0753; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 79 - 254
Target Start/End: Complemental strand, 2941 - 2774
Alignment:
| Q |
79 |
aagaatagaaatcaagcaaagcaatttcgacattgagaaaggtttttcatgtctctaatagaacattctcgtcacagaataatccttgtgaagacgataa |
178 |
Q |
| |
|
||||||||||||||| |||| |||||| ||||||||||||||||| |||| ||||||||||||||| | || |||| ||| |||||||||| |
|
|
| T |
2941 |
aagaatagaaatcaaacaaaacaattttgacattgagaaaggtttctcat---------agaacattctcgtcatacaacaatcattgcaaagacgataa |
2851 |
T |
|
| Q |
179 |
tcttaatactaaattacttaagcaatt-ggtgcacttgccagatttatcatcatctttcaaaattttgtttaaacag |
254 |
Q |
| |
|
|||||||||||||||| |||| || || ||||||||| ||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2850 |
tcttaatactaaattatttaatcagttcggtgcactttccaaatttatcatcatctttcaaaattttgtttcaacag |
2774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0753; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 3013 - 2971
Alignment:
| Q |
12 |
atatgcgtggagattctatcgtaaaatacttaggacgattcaa |
54 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
3013 |
atatgcatggagattctatcataaaatacttaggacgatccaa |
2971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0091 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0091
Description:
Target: scaffold0091; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 15913 - 15787
Alignment:
| Q |
12 |
atatgcgtggagattctatcgtaaaatacttaggacgattcaagagtttcccatcactattcaagata--------agaatagaaatcaagcaaagcaat |
103 |
Q |
| |
|
|||||| ||||||||||||| ||||| ||||| || | | ||||| | | |||||||||||||||||| |||||||||||||| ||||| ||| |
|
|
| T |
15913 |
atatgcttggagattctatcataaaagacttatgatggtccaagaatcttccatcactattcaagatataatttggagaatagaaatcaatcaaaggaat |
15814 |
T |
|
| Q |
104 |
ttcgacattgagaaaggtttttcatgt |
130 |
Q |
| |
|
|| ||| ||||||||||||| |||||| |
|
|
| T |
15813 |
tttgactttgagaaaggtttctcatgt |
15787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 145
Target Start/End: Complemental strand, 8980641 - 8980575
Alignment:
| Q |
79 |
aagaatagaaatcaagcaaagcaatttcgacattgagaaaggtttttcatgtctctaatagaacatt |
145 |
Q |
| |
|
||||||||||||||| |||| |||||| ||| ||||||||| ||| |||| || |||||||||||| |
|
|
| T |
8980641 |
aagaatagaaatcaaacaaaacaattttgactttgagaaagatttctcatatccataatagaacatt |
8980575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 26649476 - 26649526
Alignment:
| Q |
80 |
agaatagaaatcaagcaaagcaatttcgacattgagaaaggtttttcatgt |
130 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||| ||||||||||||| |||||| |
|
|
| T |
26649476 |
agaatagaaatcaatcaaaggaattttgactttgagaaaggtttctcatgt |
26649526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 26649628 - 26649678
Alignment:
| Q |
80 |
agaatagaaatcaagcaaagcaatttcgacattgagaaaggtttttcatgt |
130 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||| ||||||||||||| |||||| |
|
|
| T |
26649628 |
agaatagaaatcaatcaaaggaattttgactttgagaaaggtttctcatgt |
26649678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 26921061 - 26921111
Alignment:
| Q |
80 |
agaatagaaatcaagcaaagcaatttcgacattgagaaaggtttttcatgt |
130 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||| ||||||||||||| |||||| |
|
|
| T |
26921061 |
agaatagaaatcaatcaaaggaattttgactttgagaaaggtttctcatgt |
26921111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 26921213 - 26921263
Alignment:
| Q |
80 |
agaatagaaatcaagcaaagcaatttcgacattgagaaaggtttttcatgt |
130 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||| ||||||||||||| |||||| |
|
|
| T |
26921213 |
agaatagaaatcaatcaaaggaattttgactttgagaaaggtttctcatgt |
26921263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 9308503 - 9308553
Alignment:
| Q |
80 |
agaatagaaatcaagcaaagcaatttcgacattgagaaaggtttttcatgt |
130 |
Q |
| |
|
|||| ||||||||| ||||| ||||| ||| |||||||||||||||||||| |
|
|
| T |
9308503 |
agaagagaaatcaatcaaaggaattttgactttgagaaaggtttttcatgt |
9308553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 401
Target Start/End: Complemental strand, 18679536 - 18679488
Alignment:
| Q |
353 |
ctaaaagtgaacaaagtcttccatttcaattttggcgatgttgaatttg |
401 |
Q |
| |
|
||||||||| ||| ||||||| |||||| ||||||||||| |||||||| |
|
|
| T |
18679536 |
ctaaaagtggacagagtcttctatttcagttttggcgatgatgaatttg |
18679488 |
T |
|
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