View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19316_high_8 (Length: 398)
Name: NF19316_high_8
Description: NF19316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19316_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 43828499 - 43828888
Alignment:
| Q |
1 |
aataataatattgtagtatatctgtatttcaatacatatataatatactccactttgtgccaaaaagaaaatggtagtagtattgtttgacattgtgatt |
100 |
Q |
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| T |
43828499 |
aataataatattgtagtatatctgtatttcaatacatatataatatactccactttgtaccaaaaagaaaatggtagtagtattgtttgacattgtgatt |
43828598 |
T |
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| Q |
101 |
attaattaattaataatgcagagtttggcagtacataatctatatgtttgggagggtacagaccacacaggagtcccaacaaaaattctgacaattaata |
200 |
Q |
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| T |
43828599 |
atta----attaataatgcagagtttggcagtacataatctatatgtttgggagggtacagaccacacaggagtcccaacaaaaattctgacaattaata |
43828694 |
T |
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| Q |
201 |
gcactttgcacatgaacatatacaaccctgctacattttttggcatccatgtccacacttcaccgatcaatcttgtttactcagatatcagtatcgcaac |
300 |
Q |
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| T |
43828695 |
gcactttgcacatgaacatatacaaccctgctacattttttggcatccatgtccacacttcaccgatcaatcttgtttactcagatatcagtatcgcaac |
43828794 |
T |
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| Q |
301 |
cggtgaggtaagatcattcttaacattaaattaaatattgacattgaaaatgtatcaagtactaagatctacattgattaattcaagtaatatt |
394 |
Q |
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| T |
43828795 |
cggtgaggtaagatcattcttaacattaaattaaatattgacattgaaaatgtatcaagtactaagatctacattgattaattcaagtaatatt |
43828888 |
T |
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