View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19316_high_9 (Length: 396)
Name: NF19316_high_9
Description: NF19316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19316_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 252
Target Start/End: Original strand, 16914938 - 16915174
Alignment:
| Q |
13 |
aatatttgcgacaaaataaaattgggaccacattagatcatttgactaatttcttgtagtatcaaaaatcgtaacacaatagatatatcacaatttgaaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
16914938 |
aatatttgcgacaaaataaaattggggccacattagatcatttgactaatttcttgtagtatcaaaaatcgtaacacaatagctatatcacaatttgaaa |
16915037 |
T |
|
| Q |
113 |
tcatgattttatgtagaaattttttggatcaatgccttgacattatcttaatagtatatatatagctacatatgtgtatattgcatgcatgatcgatgtt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16915038 |
tcatgattttatgtagaaattttttggatcaatgccttgacattatcttaatagtatatatatagctacatatgtgtatattgcatgcatgatcgatgtt |
16915137 |
T |
|
| Q |
213 |
ataaaattcaacaacaagttttcccaagtattaaacctca |
252 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
16915138 |
ataaaatt---caacaagttttcctaagtattaaacctca |
16915174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 318 - 386
Target Start/End: Original strand, 16915240 - 16915308
Alignment:
| Q |
318 |
tgaagttaaatgagagtaatgagttttggtagaaatataaaaccttgaagtactcggagaggcataatt |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16915240 |
tgaagttaaatgagagtaatgagttttggtagaaatataaaaccttgaagtactcggagaggcataatt |
16915308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University