View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19316_low_12 (Length: 393)
Name: NF19316_low_12
Description: NF19316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19316_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 50342612 - 50342459
Alignment:
| Q |
18 |
gtcacgacccaatttggatggtaaccgtaaccgttgcagagaattctagtctagccggggcaagcctcaataaattctcaactacagtttggaaacaaat |
117 |
Q |
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| T |
50342612 |
gtcacgacccaatttggatggtaaccgtaaccggtgcagagaattctagtctagccagggcaagcctcaacaaaatctcaactacagtttggaaacaaat |
50342513 |
T |
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| Q |
118 |
atcaagttaaattagtgacctaatcacctattcaaccaaagaaaaattaataaa |
171 |
Q |
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| T |
50342512 |
atcaagttaaattagtgacctaatcacctattcaaccaaagaaaaattaataaa |
50342459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 50342423 - 50342370
Alignment:
| Q |
168 |
taaaaagacataacagataatttcaaagatcctcatttttca-ttctcagggtt |
220 |
Q |
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| T |
50342423 |
taaaaagacataacagataatttcaaagatcctcatttttcatttctcagggtt |
50342370 |
T |
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