View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19316_low_16 (Length: 273)
Name: NF19316_low_16
Description: NF19316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19316_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 25669650 - 25669392
Alignment:
| Q |
1 |
cctttggaacgacattcaacagattgtcagtgacactagtttggaagcaaaattggtctttttgttgttataacgtttcacgccagagctggatgcttgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25669650 |
cctttggaacgacattcaacagattgtcagtgacactagtttggaagcaaaattggtctttttgttgttataacgtttcacgccagaactggatgcttgt |
25669551 |
T |
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| Q |
101 |
atggctagtttgctttggagtttttggaagcaccactacctcaaagtgtaggatgatgttatataaatagttgctcatgtagttgatacaactcatcatt |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||| |
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| T |
25669550 |
atggctagtttgctttggagtttctggaagcaccactacctcaaagtgtaggatgatgttacataaatagctgcgcatgtagttgatacaactcatcatt |
25669451 |
T |
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| Q |
201 |
tgttggaggagtggacacttgcaaacgcaaccaccaacgatgctcgtcaaaattaaccc |
259 |
Q |
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| T |
25669450 |
tgttggacgagtggacacttgcaaacgtaaccaccaacgatgctcgtcaaaattaaccc |
25669392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 25828122 - 25827869
Alignment:
| Q |
1 |
cctttggaacgacattcaacagattgtcagtgacactagtttggaagcaaaattggtctttttgttgttataacgtttcacgccagagctggatgcttgt |
100 |
Q |
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| T |
25828122 |
cctttggaacgacattcaatagattgtcagtgatagtagtttggaagcaaaatcgatctttttgtttttacaacgtttcacgccagaactggctacttgt |
25828023 |
T |
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| Q |
101 |
atggctagtttgctttggagtttttggaagcaccactacctcaaagtgtaggatgatgttatataaatagttgctcatgtagttgatacaactcatcatt |
200 |
Q |
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| T |
25828022 |
atggctagtttgtttcggagtttacggaagcac-actacctcaaagtgtaggatgatgttaaaaagatagttgctcaagtagttgataaagctcatcatt |
25827924 |
T |
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| Q |
201 |
tgttggaggagtggacacttgcaaacgcaaccaccaacgatgctcgtcaaaatta |
255 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25827923 |
tgttggaggagtggacacttgcaaacgcaaccaccaccgatgctcgtcaaaatta |
25827869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 25472350 - 25472105
Alignment:
| Q |
1 |
cctttggaacgacattcaacagattgtcagtgacactagtttggaagcaaaattggtctttttgttgttataacgtttcacgccagagctggatgcttgt |
100 |
Q |
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|||||||||| |||||||| ||||||||| |||||||||||||| | ||||||||| ||| || ||||||| ||||| |||| | ||||| |
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| T |
25472350 |
cctttggaacaacattcaatagattgtcaatgacactagtttggc---------gatctttttgtaattacaatgtttcacaccagaactggctacttgt |
25472260 |
T |
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| Q |
101 |
atggctagtttgctttggagtttttggaagcaccactacctcaaagtgtaggatgatgttatataaatagttgctcatgtagttgatacaactcatcatt |
200 |
Q |
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||||||||||||||||||||||| | |||||||| || || |||| ||||| ||||||||| | | ||| ||||||| ||||||| || | ||||||||| |
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| T |
25472259 |
atggctagtttgctttggagtttatcgaagcaccgctgccacaaaatgtagaatgatgttacaaagataattgctcaagtagttggtaaagctcatcatt |
25472160 |
T |
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| Q |
201 |
tgttggaggagtggacacttgcaaacgcaaccaccaacgatgctcgtcaaaatta |
255 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25472159 |
tgttgtaggagtggacacttgcaaacgcaaccaccaacgatgctcgtcaaaatta |
25472105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 25429651 - 25429567
Alignment:
| Q |
3 |
tttggaacgacattcaacagattgtcagtgacactagtttggaagcaaaattggtctttttgttgttataacgtttcacgccaga |
87 |
Q |
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||||||||||||||||||||| ||||| ||||||||||||| | || || | |||||||||||||| ||||||||||| |||| |
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| T |
25429651 |
tttggaacgacattcaacagactgtcactgacactagtttgacaacagaagcgatctttttgttgttacaacgtttcacggcaga |
25429567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 24889261 - 24889345
Alignment:
| Q |
3 |
tttggaacgacattcaacagattgtcagtgacactagtttggaagcaaaattggtctttttgttgttataacgtttcacgccaga |
87 |
Q |
| |
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||||||||||||||||||||| ||||| ||||||||||||| | || || | ||||| |||||||| ||||||||||| |||| |
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| T |
24889261 |
tttggaacgacattcaacagactgtcactgacactagtttgacaacagaagcgatctttatgttgttacaacgtttcacggcaga |
24889345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 57 - 245
Target Start/End: Original strand, 25983908 - 25984096
Alignment:
| Q |
57 |
tctttttgttgttataacgtttcacgccagagctggatgcttgtatggctagtttgctttggagtttttggaagcaccactacctcaaagtgtaggatga |
156 |
Q |
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|||||||||| ||| ||||||||||||| ||||||| |||| | |||| ||| ||| |||||||||| |||||| ||||| |||||||||||| ||||| |
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| T |
25983908 |
tctttttgttattacaacgtttcacgcctgagctggctgctcgcatggttagcttgttttggagtttatggaagtaccacaacctcaaagtgtgagatga |
25984007 |
T |
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| Q |
157 |
tgttatataaatagttgctcatgtagttgatacaactcatcatttgttggaggagtggacacttgcaaacgcaaccaccaacgatgctc |
245 |
Q |
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||||| | | | | |||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||| ||||| |
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| T |
25984008 |
tgttacagagacaactgctcaagtagttgatacaactcatcatttgttggaagagtggacatttgcaaacgcagccaccaacgttgctc |
25984096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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