View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19316_low_19 (Length: 228)
Name: NF19316_low_19
Description: NF19316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19316_low_19 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 6 - 228
Target Start/End: Original strand, 43828085 - 43828307
Alignment:
| Q |
6 |
acataagcctttatacattaagcttaagctgtttatataagttctactaaacagttgtaacttttctttgtggaccatctttctgaagaaggcatcaaga |
105 |
Q |
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| T |
43828085 |
acataagcctttatacattaagcttaagctgtttatataagttctactaaacagttgtaacttttctttgtggaccatctttctgaagaaggcatcaaga |
43828184 |
T |
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| Q |
106 |
gtacacataaatgctaattcataatctgtttgatgacttttcttccatttgcacctaccatgcatccataatccattatagttggtgggtattaacactg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43828185 |
gtacacataaatgctaattcataatctgtttgatgacttttcttccatttgcacctaccatgcatccataatccattatagttggtgggtattaacactg |
43828284 |
T |
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| Q |
206 |
gcagagagttctctatccttgaa |
228 |
Q |
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||||||||||||||||||||||| |
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| T |
43828285 |
gcagagagttctctatccttgaa |
43828307 |
T |
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