View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19316_low_2 (Length: 606)
Name: NF19316_low_2
Description: NF19316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19316_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 15 - 597
Target Start/End: Complemental strand, 5976939 - 5976358
Alignment:
| Q |
15 |
agttttgtgttgtggcttgtaaatgaacgaacaaaccaatttatataaggttatgtacattgtgaaccacataaattgttggtgcaatgttgaccnnnnn |
114 |
Q |
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| T |
5976939 |
agttttgtgttgtggcttgtaaatgaacgaacaaaccaatttatataaggttatgtacgttgtggaccacataaattgtcggtgcaatgttgac--aaaa |
5976842 |
T |
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| Q |
115 |
nnnnntcatgtatttgactagttgaaattacctaatgtaaaacgtggaaaaccccaaatgcacaattttaagcattatgtgcatgtttcagattatataa |
214 |
Q |
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| T |
5976841 |
aaaaatcatgtatttgactagtttaaattacctaatgtaaaacgtggaaaaccccaaatgcacaattttaagtattatgtgcatgtttcagattatataa |
5976742 |
T |
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| Q |
215 |
tccaaataaataaaatattattttaggatcatacaatctaaaatattttcaaaatgcagacgtcgtcgttacctgagaggtttgtttggagggtgggagt |
314 |
Q |
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| T |
5976741 |
tccaaataaataaaatattattttaggatcatacaatctaaaatattttcaaaattcagacgtcgtcgttacctgagaggtttgtttggagggttggagt |
5976642 |
T |
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| Q |
315 |
gtgttacacgttttctttgactgtcgttatagtcgaggaatgtactgtgtctatatataattttggattcctcttcattgtttattctaagtcatcttca |
414 |
Q |
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| T |
5976641 |
gtgttacacgttttctttgactgtcgttatagtcgaggaatgtagtgtgtctatatatagttttggattcctcttcattgtttattctaagtcatcttca |
5976542 |
T |
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| Q |
415 |
tcttcattttctttgagggtggttatgatgtgacggtttcactgctgaccattcatattatcctcaaagttgttttgcgatatttgtgatggtagtacga |
514 |
Q |
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| T |
5976541 |
tcttcattttctttgagggtggttatgatgtaacggtttcaccgctgaccattcatattatcctcaaagttgttttgcgatatttgtgatggtagtacgg |
5976442 |
T |
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| Q |
515 |
tgatcaatagagacctttatataagtagttgtgggggtt-atatgattggtgaaatgtgactgtctccgtcatcttatattctt |
597 |
Q |
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| T |
5976441 |
tgatcaatagagaccttcatgtaagtagttgtgggggttaatatgattggtgaaatgtgactgtctccgtcatcttgtattctt |
5976358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 482
Target Start/End: Complemental strand, 37406260 - 37406199
Alignment:
| Q |
421 |
ttttctttgagggtggttatgatgtgacggtttcactgctgaccattcatattatcctcaaa |
482 |
Q |
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| T |
37406260 |
ttttctttcagggcggttattatgtcatggtttcactgttcaccattcatattatccacaaa |
37406199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 503
Target Start/End: Complemental strand, 5747313 - 5747260
Alignment:
| Q |
450 |
gtttcactgctgaccattcatattatcctcaaagttgttttgcgatatttgtga |
503 |
Q |
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| T |
5747313 |
gtttcattgttgtccatttatattatccttaaagttgttttgcggtatttgtga |
5747260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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