View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19316_low_20 (Length: 226)
Name: NF19316_low_20
Description: NF19316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19316_low_20 |
 | |
|
| [»] scaffold1995 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold1995 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: scaffold1995
Description:
Target: scaffold1995; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 23 - 209
Target Start/End: Original strand, 695 - 881
Alignment:
| Q |
23 |
gttttaggagaagtgaaaaggttgttagagaaatttcctaacgaagaagtaagtattacgttaaccggacatagtttagggagtgctatggcaacattaa |
122 |
Q |
| |
|
|||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
695 |
gttttaggggaagtgagaaggttgttagcgaaatttcctaacgaagaagtaagtattacgttaaccggacatagtttagggagtgctatggcaacattaa |
794 |
T |
|
| Q |
123 |
gtgcgtttgatatagcggaaacagggttaaatgttagggaaaatggtgaaaaaattcatgtttcggtattttcattttctggaccta |
209 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
795 |
gtgcgtttgatatagcagaaacaaggttaaatgttagggaaaatggtgaaaaaattcatgtttcggtattttcattttctggaccta |
881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 38546578 - 38546768
Alignment:
| Q |
19 |
acaagttttaggagaagtgaaaaggttgttagagaaatttcctaacgaagaagtaagtattacgttaaccggacatagtttagggagtgctatggcaaca |
118 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
38546578 |
acaagttttaggggaagtgagaaggttgttagcgaaatttcctaacgaagaagttagtattacgttaacgggacatagtttaggaagtgctatggcaaca |
38546677 |
T |
|
| Q |
119 |
ttaagtgcgtttgatatagcggaaacagggttaaatgttagggaaaatggtgaaaaaattcatgtttcggtattttcattttctggaccta |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
38546678 |
ttaagtgcgtttgatatagcggaaacagggttaaatgttagggaaaatggtgaaaaaattcatgtttctgttttttcattttctggaccta |
38546768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 38553028 - 38553218
Alignment:
| Q |
19 |
acaagttttaggagaagtgaaaaggttgttagagaaatttcctaacgaagaagtaagtattacgttaaccggacatagtttagggagtgctatggcaaca |
118 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
38553028 |
acaagttttaggggaagtgagaaggttgttagcgaaatttcctaacgaagaagttagtattacgttaacgggacatagtttaggtagtgctatggcaaca |
38553127 |
T |
|
| Q |
119 |
ttaagtgcgtttgatatagcggaaacagggttaaatgttagggaaaatggtgaaaaaattcatgtttcggtattttcattttctggaccta |
209 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
38553128 |
ttaagtgcgtttgatatagcagaaacaaggttaaatgttagggaaaatggtgaaaaaattcatgtttctgttttttcattttctggaccta |
38553218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University