View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19316_low_3 (Length: 542)

Name: NF19316_low_3
Description: NF19316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19316_low_3
NF19316_low_3
[»] chr8 (19 HSPs)
chr8 (54-531)||(476772-477261)
chr8 (366-442)||(5922048-5922124)
chr8 (367-442)||(11879599-11879674)
chr8 (367-442)||(11897015-11897090)
chr8 (368-441)||(17646993-17647066)
chr8 (367-439)||(15294672-15294744)
chr8 (367-439)||(15475041-15475113)
chr8 (366-442)||(31424162-31424238)
chr8 (366-441)||(45403029-45403104)
chr8 (366-443)||(24056622-24056699)
chr8 (366-437)||(3094307-3094378)
chr8 (397-440)||(9036758-9036801)
chr8 (368-442)||(15761495-15761569)
chr8 (366-439)||(19704509-19704583)
chr8 (397-442)||(23136348-23136393)
chr8 (367-442)||(22910257-22910332)
chr8 (366-440)||(29384370-29384444)
chr8 (378-442)||(27836530-27836594)
chr8 (1-33)||(476640-476672)
[»] chr1 (24 HSPs)
chr1 (366-439)||(19010000-19010073)
chr1 (368-443)||(25146824-25146899)
chr1 (366-442)||(9955089-9955165)
chr1 (367-442)||(9352118-9352193)
chr1 (366-441)||(30619075-30619150)
chr1 (366-442)||(21846322-21846398)
chr1 (367-442)||(9327270-9327345)
chr1 (366-441)||(23528656-23528731)
chr1 (366-434)||(16125509-16125580)
chr1 (378-442)||(18304877-18304941)
chr1 (378-442)||(34478836-34478900)
chr1 (366-442)||(41032724-41032800)
chr1 (366-441)||(13276320-13276395)
chr1 (378-440)||(42180131-42180193)
chr1 (366-439)||(12513283-12513356)
chr1 (366-441)||(14074424-14074499)
chr1 (367-441)||(12800636-12800710)
chr1 (373-442)||(17056060-17056129)
chr1 (366-442)||(18337576-18337651)
chr1 (366-440)||(17869804-17869873)
chr1 (397-442)||(47785791-47785836)
chr1 (366-442)||(13100190-13100266)
chr1 (384-441)||(9128912-9128969)
chr1 (390-438)||(12003241-12003289)
[»] chr2 (17 HSPs)
chr2 (366-442)||(1404782-1404858)
chr2 (366-442)||(15266081-15266157)
chr2 (368-442)||(31238033-31238107)
chr2 (380-442)||(1690830-1690892)
chr2 (366-440)||(35566008-35566082)
chr2 (366-443)||(23863375-23863452)
chr2 (373-442)||(36429847-36429916)
chr2 (366-442)||(30432418-30432494)
chr2 (366-443)||(20063712-20063789)
chr2 (366-439)||(25539280-25539353)
chr2 (366-439)||(31578007-31578080)
chr2 (378-442)||(15588916-15588979)
chr2 (381-444)||(15627652-15627715)
chr2 (378-443)||(24473334-24473399)
chr2 (366-442)||(5395702-5395778)
chr2 (398-442)||(19245152-19245196)
chr2 (378-441)||(16766710-16766773)
[»] chr6 (22 HSPs)
chr6 (367-442)||(6943515-6943590)
chr6 (368-441)||(15528166-15528239)
chr6 (366-442)||(27233331-27233407)
chr6 (366-441)||(7918435-7918510)
chr6 (366-443)||(30912466-30912543)
chr6 (366-441)||(17250057-17250132)
chr6 (368-442)||(10509079-10509153)
chr6 (368-441)||(26053352-26053425)
chr6 (368-441)||(26073405-26073478)
chr6 (382-442)||(7223518-7223578)
chr6 (366-442)||(17543794-17543870)
chr6 (367-442)||(5422803-5422878)
chr6 (366-443)||(23897809-23897886)
chr6 (366-442)||(19748332-19748408)
chr6 (366-443)||(11327625-11327702)
chr6 (397-442)||(17103201-17103246)
chr6 (366-442)||(18491091-18491167)
chr6 (366-439)||(3573986-3574059)
chr6 (361-434)||(8545014-8545087)
chr6 (378-438)||(2912313-2912373)
chr6 (378-442)||(10958253-10958317)
chr6 (366-421)||(4841973-4842026)
[»] chr5 (14 HSPs)
chr5 (366-441)||(43234868-43234943)
chr5 (366-440)||(23172486-23172560)
chr5 (366-442)||(22645773-22645849)
chr5 (366-441)||(20923718-20923793)
chr5 (367-442)||(18051585-18051660)
chr5 (366-440)||(18843716-18843790)
chr5 (366-443)||(19578940-19579017)
chr5 (367-439)||(19042444-19042516)
chr5 (366-442)||(21059209-21059285)
chr5 (383-437)||(24106645-24106699)
chr5 (378-441)||(38158320-38158383)
chr5 (367-433)||(27340241-27340307)
chr5 (378-439)||(20320926-20320987)
chr5 (368-423)||(41688721-41688775)
[»] chr4 (21 HSPs)
chr4 (366-443)||(5362017-5362094)
chr4 (366-441)||(8011270-8011345)
chr4 (366-442)||(13023566-13023643)
chr4 (368-442)||(8889227-8889301)
chr4 (366-442)||(13551676-13551752)
chr4 (367-441)||(4156763-4156837)
chr4 (366-440)||(7044728-7044802)
chr4 (366-442)||(24719516-24719592)
chr4 (366-442)||(36120823-36120899)
chr4 (366-441)||(9770112-9770187)
chr4 (373-442)||(10142898-10142967)
chr4 (366-442)||(23065017-23065093)
chr4 (368-439)||(5375666-5375737)
chr4 (390-441)||(9149813-9149864)
chr4 (373-442)||(7452419-7452488)
chr4 (366-443)||(18459762-18459839)
chr4 (366-442)||(6347118-6347194)
chr4 (385-437)||(7815561-7815613)
chr4 (378-441)||(9911477-9911541)
chr4 (366-440)||(17466080-17466154)
chr4 (397-442)||(8744087-8744132)
[»] chr3 (23 HSPs)
chr3 (366-442)||(29067283-29067359)
chr3 (366-442)||(27676355-27676431)
chr3 (366-441)||(20756039-20756114)
chr3 (378-440)||(3449357-3449419)
chr3 (368-442)||(28745769-28745843)
chr3 (366-442)||(15806560-15806635)
chr3 (378-442)||(25870442-25870506)
chr3 (366-441)||(24649743-24649818)
chr3 (366-442)||(8156185-8156261)
chr3 (366-432)||(21963438-21963504)
chr3 (366-432)||(21985874-21985940)
chr3 (366-440)||(28135723-28135797)
chr3 (367-441)||(30727746-30727820)
chr3 (381-441)||(22137278-22137338)
chr3 (373-436)||(17064326-17064389)
chr3 (368-442)||(24620256-24620333)
chr3 (378-442)||(17796267-17796331)
chr3 (378-442)||(19104707-19104771)
chr3 (398-442)||(22356139-22356183)
chr3 (397-437)||(42696870-42696910)
chr3 (366-419)||(10873000-10873053)
chr3 (378-442)||(17796376-17796440)
chr3 (378-442)||(19104816-19104880)
[»] chr7 (27 HSPs)
chr7 (366-442)||(26281363-26281439)
chr7 (366-440)||(5058530-5058604)
chr7 (384-441)||(44944921-44944978)
chr7 (378-442)||(8330111-8330175)
chr7 (366-441)||(4247356-4247431)
chr7 (366-441)||(11326386-11326461)
chr7 (378-441)||(22687730-22687793)
chr7 (381-443)||(7730412-7730473)
chr7 (368-441)||(5715290-5715362)
chr7 (366-439)||(8346587-8346660)
chr7 (366-443)||(39182258-39182334)
chr7 (366-442)||(8343854-8343930)
chr7 (366-442)||(9685298-9685374)
chr7 (378-442)||(24725543-24725607)
chr7 (366-441)||(24990125-24990200)
chr7 (366-432)||(11324988-11325054)
chr7 (368-442)||(26617532-26617606)
chr7 (368-442)||(27221417-27221491)
chr7 (366-443)||(8571241-8571318)
chr7 (380-441)||(30294175-30294236)
chr7 (373-441)||(21846487-21846554)
chr7 (367-442)||(14055250-14055325)
chr7 (367-442)||(14365278-14365353)
chr7 (384-442)||(26565700-26565758)
chr7 (379-424)||(17809440-17809485)
chr7 (390-442)||(21157852-21157904)
chr7 (378-437)||(4574475-4574534)
[»] scaffold0186 (1 HSPs)
scaffold0186 (367-442)||(8442-8517)
[»] scaffold0510 (1 HSPs)
scaffold0510 (366-443)||(155-232)
[»] scaffold0603 (1 HSPs)
scaffold0603 (366-442)||(9074-9150)
[»] scaffold0417 (1 HSPs)
scaffold0417 (378-442)||(7521-7585)
[»] scaffold0042 (1 HSPs)
scaffold0042 (397-443)||(93789-93835)
[»] scaffold0048 (1 HSPs)
scaffold0048 (366-442)||(48842-48918)
[»] scaffold0115 (1 HSPs)
scaffold0115 (368-441)||(35115-35188)
[»] scaffold0036 (1 HSPs)
scaffold0036 (378-442)||(37232-37296)


Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 54 - 531
Target Start/End: Original strand, 476772 - 477261
Alignment:
Q  54 ttagttatctatctactcacagattttcaattgaaatgcactaaaatccagcactatattctgataatcaaaattatttgcatattgcctccaatcataa 153  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  476772 ttagttatctatctacttacagattttcaattgaaatgcactaaaatccagcactatattctgatagtcaaaattctttgcatattgcctccaatcataa 476871  T
Q  154 gaagttgctaggaggactgatgaggttgcctcaaatctccttctat----atattatcaaacaacagat--aggtgcattgccaagctagacctcttgga 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    | ||  || ||| |  | |  |||||||||||||||||||||||||||||    
T  476872 gaagttgctaggaggactgatgaggttgcctcaaatctccttctattaacagatattctaactaaggctttaggtgcattgccaagctagacctcttgga 476971  T
Q  248 gatttttagggcttagattgaggagttattacagtgtatagcttaattatattctagttagc-----------tagattaatcctagattaattcaatca 336  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||           |||||||||||||||||||||||||||    
T  476972 gatttttagggcttagattgaggagtaattacaatgtatagcttaattatattctagttagctacatagtagctagattaatcctagattaattcaatca 477071  T
Q  337 atgcatcaattcattctcttttcattttgggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgaca 436  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  477072 atgcatcaattcattctcttttcattttgggatttaagtcattgaaggtgaagaaagtcacaaaatcctggattttaggatttaagtcaggattttgaca 477171  T
Q  437 acaatgtggacgtatatatggccggtggttttggaaaattaaatcgaggagaccattatttgtgcgggaagggaagccaactgcgagtgatgatg 531  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||    
T  477172 acaatgtgaacgtatatatggccggtggttttggaaaattaaatcgaggagaccattatttgtgc-----gggaagccaactgcgagtgatgatg 477261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 366 - 442
Target Start/End: Complemental strand, 5922124 - 5922048
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  5922124 ggatataagtcgttgaaggtgaagaaagtcacaaaatcctggattttaggatttaagtcgggattttgacaacaatg 5922048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 367 - 442
Target Start/End: Complemental strand, 11879674 - 11879599
Alignment:
Q  367 gatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    ||||| |||| ||||| |||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||    
T  11879674 gatttgagtcgttgaaagtgaagaaagttgcaaaatcctgaattttaggatttaagtcagaattttgacaacaatg 11879599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 367 - 442
Target Start/End: Complemental strand, 11897090 - 11897015
Alignment:
Q  367 gatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    ||||| |||| ||||| |||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||    
T  11897090 gatttgagtcgttgaaagtgaagaaagttgcaaaatcctgaattttaggatttaagtcagaattttgacaacaatg 11897015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 368 - 441
Target Start/End: Complemental strand, 17647066 - 17646993
Alignment:
Q  368 atttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 441  Q
    |||| |||| |||||||||||||||||| ||||||||||||||||| |||||||||| | ||||||||||||||    
T  17647066 atttgagtcgttgaaggtgaagaaagtcgcaaaatcctgaattttatgatttaagtcggaattttgacaacaat 17646993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 367 - 439
Target Start/End: Complemental strand, 15294744 - 15294672
Alignment:
Q  367 gatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaaca 439  Q
    ||||| |||| ||||||||||| |||||| |||||||||||||||||||||||||||| ||||||| ||||||    
T  15294744 gatttgagtcgttgaaggtgaaaaaagtcgcaaaatcctgaattttaggatttaagtcgggatttttacaaca 15294672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 367 - 439
Target Start/End: Complemental strand, 15475113 - 15475041
Alignment:
Q  367 gatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaaca 439  Q
    ||||| |||| ||||||||||| |||||| |||||||||||||||||||||||||||| ||||||| ||||||    
T  15475113 gatttgagtcgttgaaggtgaaaaaagtcgcaaaatcctgaattttaggatttaagtcgggatttttacaaca 15475041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 366 - 442
Target Start/End: Complemental strand, 31424238 - 31424162
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||| |||| ||||| | ||||||||||  ||||||||||||||||| |||||||||||||||||||||| ||||    
T  31424238 ggatttgagtcgttgaaagggaagaaagtcgtaaaatcctgaattttagaatttaagtcaggattttgacaataatg 31424162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 366 - 441
Target Start/End: Complemental strand, 45403104 - 45403029
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 441  Q
    ||||||||||| |||||||| ||||||||| ||||||| || ||||||| |||||||||  |||||||||||||||    
T  45403104 ggatttaagtcgttgaaggtcaagaaagtcgcaaaatcttggattttagaatttaagtcgcgattttgacaacaat 45403029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 443
Target Start/End: Original strand, 24056622 - 24056699
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatgt 443  Q
    |||||| |||| || || ||||| |||||| |||||||||| |||||||||||||||||| |||||||| ||||||||    
T  24056622 ggatttgagtcgttaaatgtgaataaagtcgcaaaatcctggattttaggatttaagtcaagattttgataacaatgt 24056699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 437
Target Start/End: Original strand, 3094307 - 3094378
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaa 437  Q
    |||||| |||| |||||||||||||||||  ||||||||||||||||| ||||||||||   ||||||||||    
T  3094307 ggatttgagtcgttgaaggtgaagaaagtagcaaaatcctgaattttaagatttaagtcgaaattttgacaa 3094378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 9036758 - 9036801
Alignment:
Q  397 caaaatcctgaattttaggatttaagtcaggattttgacaacaa 440  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  9036758 caaaatcctgaattttaggatttaagtcaggtttttgacaacaa 9036801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 368 - 442
Target Start/End: Original strand, 15761495 - 15761569
Alignment:
Q  368 atttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||| |||| |||||||| || ||| ||||||||||||| | |||||||||||||||  ||||||||||||||||    
T  15761495 atttgagtcgttgaaggtaaataaactcacaaaatcctggagtttaggatttaagtcgagattttgacaacaatg 15761569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 366 - 439
Target Start/End: Original strand, 19704509 - 19704583
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcc-tgaattttaggatttaagtcaggattttgacaaca 439  Q
    |||||| |||| |||||||||||||||||| ||||| || ||||||||| |||||||||  ||||||||||||||    
T  19704509 ggatttgagtcgttgaaggtgaagaaagtcgcaaaaaccttgaattttaagatttaagttgggattttgacaaca 19704583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 397 - 442
Target Start/End: Complemental strand, 23136393 - 23136348
Alignment:
Q  397 caaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||    
T  23136393 caaaatcctgaattttaggatttaagtcgggattttgacaataatg 23136348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 367 - 442
Target Start/End: Original strand, 22910257 - 22910332
Alignment:
Q  367 gatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    ||||| |||| ||||| ||||||||||||  |||||||| |||||||||||||||||| |||| || ||| |||||    
T  22910257 gatttgagtcgttgaatgtgaagaaagtcgtaaaatcctaaattttaggatttaagtcgggatgtttacatcaatg 22910332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 440
Target Start/End: Original strand, 29384370 - 29384444
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaa 440  Q
    |||||| |||| |||||||||||||||||| |||||||    ||||||||||||||  | |||||||||||||||    
T  29384370 ggatttgagtcgttgaaggtgaagaaagtcgcaaaatctaagattttaggatttaaacctggattttgacaacaa 29384444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 442
Target Start/End: Original strand, 27836530 - 27836594
Alignment:
Q  378 ttgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    ||||||||||| |||  | ||||||||||||||||||||| |||||  | |||||||||||||||    
T  27836530 ttgaaggtgaataaaaccgcaaaatcctgaattttaggatctaagtttgaattttgacaacaatg 27836594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 476640 - 476672
Alignment:
Q  1 tggtttctcagatactatcacaggatattgctt 33  Q
    |||||| ||||||||||||||||||||||||||    
T  476640 tggtttatcagatactatcacaggatattgctt 476672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 366 - 439
Target Start/End: Original strand, 19010000 - 19010073
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaaca 439  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  19010000 ggatttaagtcattgaaggtgaaaaaagtcgcaaaatcctgaattttaggatttaagtccggattttgacaaca 19010073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 368 - 443
Target Start/End: Original strand, 25146824 - 25146899
Alignment:
Q  368 atttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatgt 443  Q
    |||| |||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  25146824 atttgagtcgttgaaggtgaagaaagtcgcaaaattctgaattttaggatttaagtcaggattttgacaacaatgt 25146899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 366 - 442
Target Start/End: Original strand, 9955089 - 9955165
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    ||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||  |||||||||||||||||    
T  9955089 ggatttaagtcgttgaaggtgaagaaagtcgcaaaatcctaaattttaggatttaagttgggattttgacaacaatg 9955165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 367 - 442
Target Start/End: Original strand, 9352118 - 9352193
Alignment:
Q  367 gatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    ||||| |||| |||||||||||||||||| ||||| |||| ||||||||||||||||| |||||||||||||||||    
T  9352118 gatttgagtctttgaaggtgaagaaagtcgcaaaaccctggattttaggatttaagtcgggattttgacaacaatg 9352193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 366 - 441
Target Start/End: Complemental strand, 30619150 - 30619075
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 441  Q
    |||||| |||| ||||||||||||||| || |||||||||| ||||||||||||||||| ||||||||||||||||    
T  30619150 ggatttgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaagtcgggattttgacaacaat 30619075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 366 - 442
Target Start/End: Original strand, 21846322 - 21846398
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||| |||| ||||||||||| |||||| |||||||||| |||||||||||||| || |||||||||||||||||    
T  21846322 ggatttgagtcgttgaaggtgaaaaaagtcgcaaaatcctggattttaggatttaactcgggattttgacaacaatg 21846398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 367 - 442
Target Start/End: Original strand, 9327270 - 9327345
Alignment:
Q  367 gatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    ||||| |||| ||||||||| |||||||| ||||| ||| |||||||||||||||||||||||||| |||||||||    
T  9327270 gatttgagtcgttgaaggtgtagaaagtcgcaaaaccctaaattttaggatttaagtcaggattttaacaacaatg 9327345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 366 - 441
Target Start/End: Complemental strand, 23528731 - 23528656
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 441  Q
    |||||| |||| |||||| ||||||||||| ||||||||||||||||| |||||||||  ||||||||||||||||    
T  23528731 ggatttgagtcgttgaagatgaagaaagtcgcaaaatcctgaattttaagatttaagttgggattttgacaacaat 23528656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 366 - 434
Target Start/End: Original strand, 16125509 - 16125580
Alignment:
Q  366 ggatttaagtcattgaaggtgaa---gaaagtcacaaaatcctgaattttaggatttaagtcaggattttga 434  Q
    ||||||| ||| |||||||||||   ||||||| ||||||||||||||||||||||||||||||||||||||    
T  16125509 ggatttaggtcgttgaaggtgaaaaagaaagtcgcaaaatcctgaattttaggatttaagtcaggattttga 16125580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 378 - 442
Target Start/End: Original strand, 18304877 - 18304941
Alignment:
Q  378 ttgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||||||||||||||| |||||| ||| ||||||||||||||||  |||||||||||||||||    
T  18304877 ttgaaggtgaagaaagtcgcaaaatactggattttaggatttaagttgggattttgacaacaatg 18304941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 378 - 442
Target Start/End: Original strand, 34478836 - 34478900
Alignment:
Q  378 ttgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||||||||||||||||||||||||  ||||||| |||||||||| ||||||| |||||||||    
T  34478836 ttgaaggtgaagaaagtcacaaaatcccaaattttaagatttaagtcgggattttaacaacaatg 34478900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 366 - 442
Target Start/End: Original strand, 41032724 - 41032800
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||| |||| ||||||||||||||| || |||||||||||||| || ||||||||||  ||||||||||||||||    
T  41032724 ggatttgagtcgttgaaggtgaagaaaatcgcaaaatcctgaattctacgatttaagtcgagattttgacaacaatg 41032800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 366 - 441
Target Start/End: Original strand, 13276320 - 13276395
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 441  Q
    ||||||| ||| |||||| ||||||||||| |||||||||  |||||||||||||| || ||||||||||||||||    
T  13276320 ggatttaggtcgttgaagatgaagaaagtcgcaaaatcctagattttaggatttaaatcgggattttgacaacaat 13276395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 42180131 - 42180193
Alignment:
Q  378 ttgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaa 440  Q
    ||||||| |||||||||| |||||||||||||||||| ||||||||  |||||||||||||||    
T  42180131 ttgaaggggaagaaagtcgcaaaatcctgaattttagaatttaagttgggattttgacaacaa 42180193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 439
Target Start/End: Complemental strand, 12513356 - 12513283
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaaca 439  Q
    |||||| |||| |||||| ||||||||||| |||||||||  ||| ||||||||||||| ||||||||||||||    
T  12513356 ggatttgagtcgttgaagctgaagaaagtcgcaaaatcctagattgtaggatttaagtcgggattttgacaaca 12513283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 441
Target Start/End: Original strand, 14074424 - 14074499
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 441  Q
    |||||| |||| |||||  ||||||||||| |||||||||  ||||||||||||||| | ||||||||||||||||    
T  14074424 ggatttgagtcgttgaacatgaagaaagtcgcaaaatcctacattttaggatttaagacgggattttgacaacaat 14074499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 367 - 441
Target Start/End: Original strand, 12800636 - 12800710
Alignment:
Q  367 gatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 441  Q
    ||||| |||| ||||| ||||||||||||  |||||||| |||||||||||||||||  ||||||| ||||||||    
T  12800636 gatttgagtcgttgaatgtgaagaaagtcgtaaaatcctaaattttaggatttaagttgggattttcacaacaat 12800710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 373 - 442
Target Start/End: Original strand, 17056060 - 17056129
Alignment:
Q  373 agtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||| ||||||||| ||||| |  |||||||||| |||||||||||||| ||||||||||||| ||||||    
T  17056060 agtcgttgaaggtggagaaaattgcaaaatcctggattttaggatttaaatcaggattttgactacaatg 17056129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 442
Target Start/End: Original strand, 18337576 - 18337651
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||| |||| ||||||||||| |||||  |||||||||| |||||||| | |||||| |||||||||||||||||    
T  18337576 ggatttgagtcgttgaaggtgaataaagttgcaaaatcctggattttagg-tataagtcgggattttgacaacaatg 18337651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 440
Target Start/End: Original strand, 17869804 - 17869873
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaa 440  Q
    ||||||| ||| | |||||||||||||||| |||||||||     ||| ||||||||||||||||||||||||||    
T  17869804 ggatttaggtcgtcgaaggtgaagaaagtcgcaaaatcct-----ttaagatttaagtcaggattttgacaacaa 17869873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 397 - 442
Target Start/End: Complemental strand, 47785836 - 47785791
Alignment:
Q  397 caaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||||||||||||||||||||| ||  |||||||||||||||||    
T  47785836 caaaatcctgaattttaggatttatgttgggattttgacaacaatg 47785791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 442
Target Start/End: Complemental strand, 13100266 - 13100190
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||| |||| ||||| ||||||||||||  ||||||||  ||||||| ||||||||  |||||||||||| ||||    
T  13100266 ggatttgagtcgttgaacgtgaagaaagtcgtaaaatcctcgattttagaatttaagttgggattttgacaataatg 13100190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 441
Target Start/End: Original strand, 9128912 - 9128969
Alignment:
Q  384 gtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 441  Q
    |||||||||||| ||| ||||| | ||||||||||||||||  |||||| ||||||||    
T  9128912 gtgaagaaagtcgcaagatcctaatttttaggatttaagtcgtgattttaacaacaat 9128969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 438
Target Start/End: Original strand, 12003241 - 12003289
Alignment:
Q  390 aaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaac 438  Q
    |||||||||||| |||||||||||  | ||||||| |||||||||||||    
T  12003241 aaagtcacaaaaacctgaattttaaaacttaagtcgggattttgacaac 12003289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 6e-26; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 366 - 442
Target Start/End: Complemental strand, 1404858 - 1404782
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||    
T  1404858 ggatttaagtcgttgaaggtgaagaaagtcacaaaatcctaaattttagaatttaagtcgggattttgacaacaatg 1404782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 366 - 442
Target Start/End: Complemental strand, 15266157 - 15266081
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||| | ||||||||| |||| ||||| |||||||||||||||||||||||||| ||| ||||||||||||||||    
T  15266157 ggatttgaatcattgaagatgaataaagttacaaaatcctgaattttaggatttaaatcatgattttgacaacaatg 15266081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 368 - 442
Target Start/End: Original strand, 31238033 - 31238107
Alignment:
Q  368 atttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||| |||| |||||||||||||||||  |||||||||  ||||||||||||||||| |||||||||||||||||    
T  31238033 atttgagtcgttgaaggtgaagaaagtggcaaaatcctagattttaggatttaagtcgggattttgacaacaatg 31238107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 380 - 442
Target Start/End: Original strand, 1690830 - 1690892
Alignment:
Q  380 gaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| |  ||||||||||||||    
T  1690830 gaaggtgaagaaagtcacaaaatcctaaattttaagatttaagtcggagttttgacaacaatg 1690892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 366 - 440
Target Start/End: Original strand, 35566008 - 35566082
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaa 440  Q
    |||||| ||||||||||  ||||||||||| ||||||||||||||||  |||||||||  |||||||||||||||    
T  35566008 ggatttgagtcattgaatatgaagaaagtcgcaaaatcctgaattttgtgatttaagttgggattttgacaacaa 35566082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 443
Target Start/End: Original strand, 23863375 - 23863452
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatgt 443  Q
    |||||| |||| ||||| |||||||||||| |||||| ||  ||||||| ||||||||| ||||||||||||||||||    
T  23863375 ggatttcagtcgttgaaagtgaagaaagtcgcaaaattctcgattttagaatttaagtcgggattttgacaacaatgt 23863452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 373 - 442
Target Start/End: Complemental strand, 36429916 - 36429847
Alignment:
Q  373 agtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||| |||||||||||||||||| |||||||||  ||| ||||||||||||  |||||||||||||||||    
T  36429916 agtcgttgaaggtgaagaaagtcgcaaaatcctagattataggatttaagttgggattttgacaacaatg 36429847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 366 - 442
Target Start/End: Complemental strand, 30432494 - 30432418
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||| |||| ||||||| ||||||||||  ||||||||  ||||||| |||||| ||||||||||||||||||||    
T  30432494 ggatttgagtcgttgaaggcgaagaaagtcgaaaaatcctagattttagaatttaaatcaggattttgacaacaatg 30432418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 443
Target Start/End: Complemental strand, 20063789 - 20063712
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatgt 443  Q
    ||||||||||| |||||| ||||||||  | ||||| | || |||||||| |||||||| ||||||||||||||||||    
T  20063789 ggatttaagtccttgaagatgaagaaaaccgcaaaaccttggattttaggttttaagtcgggattttgacaacaatgt 20063712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 439
Target Start/End: Original strand, 25539280 - 25539353
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaaca 439  Q
    ||||||||||| ||||||||||||||| |  |||| || ||||||||||||||||| || ||||||| ||||||    
T  25539280 ggatttaagtcgttgaaggtgaagaaaattgcaaattcttgaattttaggatttaaatcgggattttaacaaca 25539353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 439
Target Start/End: Complemental strand, 31578080 - 31578007
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaaca 439  Q
    |||||||| || ||||||||||||||| || ||||||| | |||||||  ||||||||| ||||||||||||||    
T  31578080 ggatttaaatcgttgaaggtgaagaaaatcgcaaaatcttaaattttaacatttaagtcgggattttgacaaca 31578007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 442
Target Start/End: Original strand, 15588916 - 15588979
Alignment:
Q  378 ttgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||||||||||||| | ||||||||||||||||| || ||||||| ||||||||||| |||||    
T  15588916 ttgaaggtgaagaaagacgcaaaatcctgaattttaaga-ttaagtcgggattttgacagcaatg 15588979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 381 - 444
Target Start/End: Complemental strand, 15627715 - 15627652
Alignment:
Q  381 aaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatgtg 444  Q
    |||||||| |||  ||||||||| | |||||||||||||||||| |||||||||||| ||||||    
T  15627715 aaggtgaataaaaccacaaaatcataaattttaggatttaagtcgggattttgacaataatgtg 15627652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 378 - 443
Target Start/End: Complemental strand, 24473399 - 24473334
Alignment:
Q  378 ttgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatgt 443  Q
    ||||||||||  ||| || |||||||||||||||| ||| |||||||| ||||| |||||||||||    
T  24473399 ttgaaggtgagtaaaatcgcaaaatcctgaattttgggacttaagtcacgatttcgacaacaatgt 24473334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 442
Target Start/End: Original strand, 5395702 - 5395778
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||| ||||||| ||| |||| |||||| |||||||||  |||||| |||||| ||||  |||||||||||||||    
T  5395702 ggatttgagtcatttaagatgaataaagtcgcaaaatcctatattttatgatttaggtcaaaattttgacaacaatg 5395778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 442
Target Start/End: Complemental strand, 19245196 - 19245152
Alignment:
Q  398 aaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    ||||||||||||||||  ||||||||| |||||||||||||||||    
T  19245196 aaaatcctgaattttaaaatttaagtcgggattttgacaacaatg 19245152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 441
Target Start/End: Complemental strand, 16766773 - 16766710
Alignment:
Q  378 ttgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 441  Q
    ||||||||||| ||| ||  |||||||| ||||||| |||||||||||  ||||||||||||||    
T  16766773 ttgaaggtgaataaaatcgtaaaatcctaaattttaagatttaagtcaaaattttgacaacaat 16766710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 367 - 442
Target Start/End: Original strand, 6943515 - 6943590
Alignment:
Q  367 gatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    ||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  6943515 gatttgagtcgttgaaggtgaagaaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaacaatg 6943590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 368 - 441
Target Start/End: Original strand, 15528166 - 15528239
Alignment:
Q  368 atttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 441  Q
    ||||||||| || ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  15528166 atttaagtcgttaaaggtgaagaaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaacaat 15528239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 366 - 442
Target Start/End: Original strand, 27233331 - 27233407
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | | |||||||||||||    
T  27233331 ggatttaagtcgttgaaggtgaagaaagtcacaaaatcctggattttaggatttaagtcggtagtttgacaacaatg 27233407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 366 - 441
Target Start/End: Original strand, 7918435 - 7918510
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 441  Q
    ||||||||||| ||||||||||| |||||| |||||||||||||||||| ||||||||| ||||||||||||||||    
T  7918435 ggatttaagtcgttgaaggtgaaaaaagtcgcaaaatcctgaattttagaatttaagtcgggattttgacaacaat 7918510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 366 - 443
Target Start/End: Original strand, 30912466 - 30912543
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatgt 443  Q
    |||||| |||| |||||||||||||||||| ||||||||| |||||||||||||||||  ||||||||||||||||||    
T  30912466 ggatttgagtcgttgaaggtgaagaaagtcgcaaaatcctaaattttaggatttaagttgggattttgacaacaatgt 30912543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 366 - 441
Target Start/End: Complemental strand, 17250132 - 17250057
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 441  Q
    ||||||||||| |||||||||||||||||  |||||||||| ||||||||||||||||| ||||||| ||||||||    
T  17250132 ggatttaagtcgttgaaggtgaagaaagttgcaaaatcctggattttaggatttaagtcgggattttaacaacaat 17250057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 368 - 442
Target Start/End: Original strand, 10509079 - 10509153
Alignment:
Q  368 atttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||| |||||||||| ||||||||||||||||| | ||||||||||||||||||||| |||||||||||| ||||    
T  10509079 atttgagtcattgaatgtgaagaaagtcacaaatttctgaattttaggatttaagtctggattttgacaataatg 10509153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 368 - 441
Target Start/End: Original strand, 26053352 - 26053425
Alignment:
Q  368 atttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 441  Q
    |||| ||||||||||||||||||||||| |||||||||  |||||| |||||||||| ||||||||||||||||    
T  26053352 atttgagtcattgaaggtgaagaaagtcgcaaaatcctagattttaagatttaagtcgggattttgacaacaat 26053425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 368 - 441
Target Start/End: Original strand, 26073405 - 26073478
Alignment:
Q  368 atttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 441  Q
    |||| ||||||||||||||||||||||| |||||||||  |||||| |||||||||| ||||||||||||||||    
T  26073405 atttgagtcattgaaggtgaagaaagtcgcaaaatcctagattttaagatttaagtcgggattttgacaacaat 26073478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 382 - 442
Target Start/End: Complemental strand, 7223578 - 7223518
Alignment:
Q  382 aggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||    
T  7223578 aggtgaagaaagtcgcaaaatcctaaattttaggatttaagtcgggattttgacaacaatg 7223518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 366 - 442
Target Start/End: Original strand, 17543794 - 17543870
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||| |||| ||||| ||||| |||||| ||||||||||||||||||||||||||||  ||||||||||||||||    
T  17543794 ggatttgagtcgttgaaagtgaaaaaagtcgcaaaatcctgaattttaggatttaagtcgagattttgacaacaatg 17543870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 367 - 442
Target Start/End: Original strand, 5422803 - 5422878
Alignment:
Q  367 gatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    ||||| |||| ||||||||||| |||||  ||||||| |||||||||| ||||||||| |||||||||||||||||    
T  5422803 gatttgagtcgttgaaggtgaataaagttgcaaaatcatgaattttagtatttaagtcgggattttgacaacaatg 5422878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 443
Target Start/End: Complemental strand, 23897886 - 23897809
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatgt 443  Q
    |||||| |||| ||||| |||||||||||| |||||||||| ||||||||||||||||| |||| ||  |||||||||    
T  23897886 ggatttgagtcgttgaacgtgaagaaagtcgcaaaatcctgcattttaggatttaagtcgggatcttatcaacaatgt 23897809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 366 - 442
Target Start/End: Complemental strand, 19748408 - 19748332
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||| ||||||| |||||||||||| || |||||||||| ||| || |||||||||| ||||||||| |||||||    
T  19748408 ggatttgagtcattaaaggtgaagaaaatctcaaaatcctggattgtaagatttaagtcgggattttgaaaacaatg 19748332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 443
Target Start/End: Original strand, 11327625 - 11327702
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatgt 443  Q
    ||||||||||| |||||| ||||||||  | ||||| | || |||||||| |||||||| ||||||||||||||||||    
T  11327625 ggatttaagtccttgaagatgaagaaaaccgcaaaaccttggattttaggttttaagtcgggattttgacaacaatgt 11327702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 397 - 442
Target Start/End: Complemental strand, 17103246 - 17103201
Alignment:
Q  397 caaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||    
T  17103246 caaaatcctgaattttaagatttaagtcgggattttgacaacaatg 17103201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 442
Target Start/End: Original strand, 18491091 - 18491167
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||| |||| ||||||||||| ||||   |||||| ||| ||||||||||||||||| ||||||||||| |||||    
T  18491091 ggatttgagtcgttgaaggtgaataaagatgcaaaattctggattttaggatttaagtcgggattttgacagcaatg 18491167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 366 - 439
Target Start/End: Original strand, 3573986 - 3574059
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaaca 439  Q
    |||||| |||| |||||||||||||||||| | |||| ||| ||||||| ||||||||| | ||||||| ||||    
T  3573986 ggatttgagtcgttgaaggtgaagaaagtcgcgaaattctggattttagaatttaagtcggaattttgaaaaca 3574059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 361 - 434
Target Start/End: Original strand, 8545014 - 8545087
Alignment:
Q  361 ttttgggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttga 434  Q
    ||||||||||||| |  ||||| ||||  |||||| ||||||||| ||||||||||||||| || |||||||||    
T  8545014 ttttgggatttaaattgttgaaagtgagtaaagtcgcaaaatcctaaattttaggatttaaatcgggattttga 8545087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 438
Target Start/End: Original strand, 2912313 - 2912373
Alignment:
Q  378 ttgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaac 438  Q
    |||||| || |||||||  ||||||||| ||||||| |||||||||| |||||||||||||    
T  2912313 ttgaagatggagaaagttgcaaaatcctaaattttaagatttaagtcgggattttgacaac 2912373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 442
Target Start/End: Original strand, 10958253 - 10958317
Alignment:
Q  378 ttgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    ||||||||||   ||||| ||||||||||||||||  ||||||||||  ||||||||||||||||    
T  10958253 ttgaaggtgagtcaagtcgcaaaatcctgaattttgagatttaagtcgcgattttgacaacaatg 10958317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 366 - 421
Target Start/End: Original strand, 4841973 - 4842026
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaa 421  Q
    |||||| |||| ||||||||||| |||||| ||||||||  |||||||||||||||    
T  4841973 ggatttgagtcgttgaaggtgaataaagtcgcaaaatcc--aattttaggatttaa 4842026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 366 - 441
Target Start/End: Complemental strand, 43234943 - 43234868
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 441  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||    
T  43234943 ggatttaagtcgttgaaggtgaagaaagtcgcaaaatcctgaattttaggatttaagttgggattttgacaacaat 43234868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 366 - 440
Target Start/End: Original strand, 23172486 - 23172560
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaa 440  Q
    ||||||||||| |||||| ||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||    
T  23172486 ggatttaagtcgttgaagatgaagaaagtcgcaaaatcctaaattttaggatttaagtcgggattttgacaacaa 23172560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 366 - 442
Target Start/End: Original strand, 22645773 - 22645849
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||||| || |||||||||||||||||| |||||| ||| ||||||||||||||||| |||||||||||||||||    
T  22645773 ggatttaaatcgttgaaggtgaagaaagtcgcaaaatactggattttaggatttaagtcgggattttgacaacaatg 22645849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 366 - 441
Target Start/End: Complemental strand, 20923793 - 20923718
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 441  Q
    ||||||| ||| |||||||||||||||||| |||||| ||| ||||||||||||||||| ||||||||||||||||    
T  20923793 ggatttaggtcgttgaaggtgaagaaagtcgcaaaattctggattttaggatttaagtcgggattttgacaacaat 20923718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 367 - 442
Target Start/End: Original strand, 18051585 - 18051660
Alignment:
Q  367 gatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    ||||| |||| |||||| ||||||||||| |||||||||  ||||||||||||||||| |||||||||||||||||    
T  18051585 gatttgagtcgttgaagttgaagaaagtcgcaaaatcctatattttaggatttaagtcgggattttgacaacaatg 18051660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 366 - 440
Target Start/End: Complemental strand, 18843790 - 18843716
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaa 440  Q
    |||||| |||| |||||||||||||||||| |||||||||||||| ||||||||||||| | ||||| |||||||    
T  18843790 ggatttgagtcgttgaaggtgaagaaagtcgcaaaatcctgaattataggatttaagtcggaattttaacaacaa 18843716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 366 - 443
Target Start/End: Complemental strand, 19579017 - 19578940
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatgt 443  Q
    ||||||||||| ||||||||||||||| || |||||||||| |||||| |||||||||  | ||||||||||||||||    
T  19579017 ggatttaagtcgttgaaggtgaagaaaatcgcaaaatcctggattttatgatttaagttggaattttgacaacaatgt 19578940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 367 - 439
Target Start/End: Original strand, 19042444 - 19042516
Alignment:
Q  367 gatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaaca 439  Q
    ||||| |||| |||||||||||||||||||||||||| | |||||||| ||||||||  ||||||||||||||    
T  19042444 gatttgagtcgttgaaggtgaagaaagtcacaaaatcttaaattttagaatttaagttgggattttgacaaca 19042516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 366 - 442
Target Start/End: Original strand, 21059209 - 21059285
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||| |||| ||||| |||||||||||| |||||||||  |||||||||||||| || |||||||||||||||||    
T  21059209 ggatttgagtcgttgaaagtgaagaaagtcgcaaaatcctagattttaggatttaaatcgggattttgacaacaatg 21059285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 383 - 437
Target Start/End: Complemental strand, 24106699 - 24106645
Alignment:
Q  383 ggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaa 437  Q
    ||||||||||||  ||||||||||||||||| ||||||| |||||||||||||||    
T  24106699 ggtgaagaaagttgcaaaatcctgaattttatgatttaaatcaggattttgacaa 24106645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 378 - 441
Target Start/End: Original strand, 38158320 - 38158383
Alignment:
Q  378 ttgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 441  Q
    ||||| || ||||||||| |||||||||  ||||||||||||||||| | ||||||||||||||    
T  38158320 ttgaaagtcaagaaagtcgcaaaatcctagattttaggatttaagtcggaattttgacaacaat 38158383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 433
Target Start/End: Original strand, 27340241 - 27340307
Alignment:
Q  367 gatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttg 433  Q
    ||||| |||| |||||| ||||||||||| ||||||| | ||||||| |||||||||| ||||||||    
T  27340241 gatttgagtcgttgaagatgaagaaagtcgcaaaatcataaattttatgatttaagtcgggattttg 27340307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 20320987 - 20320926
Alignment:
Q  378 ttgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaaca 439  Q
    |||||||||||||||||  ||||||| | |||||||||||||| ||  ||||||||||||||    
T  20320987 ttgaaggtgaagaaagttgcaaaatcttaaattttaggatttaggttgggattttgacaaca 20320926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 423
Target Start/End: Original strand, 41688721 - 41688775
Alignment:
Q  368 atttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagt 423  Q
    ||||||||| ||||||||||||||| |  |||||||| ||||||||||||||||||    
T  41688721 atttaagtcgttgaaggtgaagaaaattgcaaaatcc-gaattttaggatttaagt 41688775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 366 - 443
Target Start/End: Original strand, 5362017 - 5362094
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatgt 443  Q
    |||||| |||| |||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  5362017 ggatttgagtcgttgaagatgaagaaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaacaatgt 5362094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 366 - 441
Target Start/End: Original strand, 8011270 - 8011345
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 441  Q
    |||||| |||| |||||||||||||||||| ||||||||||||||||||||||| |||  ||||||||||||||||    
T  8011270 ggatttgagtcgttgaaggtgaagaaagtcgcaaaatcctgaattttaggatttgagttgggattttgacaacaat 8011345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 366 - 442
Target Start/End: Complemental strand, 13023643 - 13023566
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaa-ttttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||| ||||||||||||||||||||||| ||||||||| || |||||||||||||||  |||||||||||||||||    
T  13023643 ggatttgagtcattgaaggtgaagaaagtcgcaaaatcctaaatttttaggatttaagttgggattttgacaacaatg 13023566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 368 - 442
Target Start/End: Complemental strand, 8889301 - 8889227
Alignment:
Q  368 atttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||| |||| |||| |||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| |||||    
T  8889301 atttgagtcgttgatggtgaagaaattcacaaaatcctggattttaggatttaagtcgggattttgacatcaatg 8889227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 366 - 442
Target Start/End: Original strand, 13551676 - 13551752
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||| |||| ||||||||||| |||||| ||||||||| ||||||||||| ||||||  ||||||||||||||||    
T  13551676 ggatttgagtcgttgaaggtgaaaaaagtcgcaaaatcctaaattttaggatataagtcgagattttgacaacaatg 13551752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 367 - 441
Target Start/End: Complemental strand, 4156837 - 4156763
Alignment:
Q  367 gatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 441  Q
    ||||| |||| || |||||||| ||||||| |||||||| ||||||| |||||||||| ||||||||||||||||    
T  4156837 gatttgagtcgttaaaggtgaataaagtcataaaatcctaaattttaagatttaagtcgggattttgacaacaat 4156763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 366 - 440
Target Start/End: Complemental strand, 7044802 - 7044728
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaa 440  Q
    |||||| |||| ||||||||||| |||||  ||||||| || ||||||||||||||||| |||||||||||||||    
T  7044802 ggatttgagtcgttgaaggtgaataaagttgcaaaatcatggattttaggatttaagtcgggattttgacaacaa 7044728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 366 - 442
Target Start/End: Complemental strand, 24719592 - 24719516
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||| |||| ||||||||||| |||||| ||||||| |||||||||| | |||||||  ||||||||||||||||    
T  24719592 ggatttgagtcgttgaaggtgaataaagtcgcaaaatcttgaattttagaaattaagtcgagattttgacaacaatg 24719516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 366 - 442
Target Start/End: Complemental strand, 36120899 - 36120823
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    ||||||||||| ||||||||||||||| || ||||||||| |||||||  |||||| || | |||||||||||||||    
T  36120899 ggatttaagtcgttgaaggtgaagaaaatcgcaaaatcctaaattttaaaatttaaatcggaattttgacaacaatg 36120823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 441
Target Start/End: Complemental strand, 9770187 - 9770112
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 441  Q
    |||||| |||| ||||||||||| ||||||||||||||||  ||||||| |||||||||  |||||| ||||||||    
T  9770187 ggatttgagtcgttgaaggtgaaaaaagtcacaaaatcctagattttagaatttaagtcgagattttaacaacaat 9770112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 373 - 442
Target Start/End: Complemental strand, 10142967 - 10142898
Alignment:
Q  373 agtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||||||||||| |||||||| ||||||  | |||||||| ||||||||| ||||||| |||||||||    
T  10142967 agtcattgaaggtggagaaagtcgcaaaatattaaattttagaatttaagtcgggattttcacaacaatg 10142898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 442
Target Start/End: Original strand, 23065017 - 23065093
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||| |||| ||||| ||||||||||| ||||||| ||| ||||||| ||||||||| || |||| |||||||||    
T  23065017 ggatttgagtcgttgaatgtgaagaaagttacaaaatactggattttagaatttaagtcggggttttaacaacaatg 23065093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 368 - 439
Target Start/End: Complemental strand, 5375737 - 5375666
Alignment:
Q  368 atttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaaca 439  Q
    |||| |||| |||||||||||||||||| ||||||| | |||||||| ||||| ||  ||||||||||||||    
T  5375737 attttagtcgttgaaggtgaagaaagtcgcaaaatcttaaattttagaatttaggttgggattttgacaaca 5375666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 390 - 441
Target Start/End: Original strand, 9149813 - 9149864
Alignment:
Q  390 aaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 441  Q
    |||||| ||||||||| |||||||||||||||||| |||||||||| |||||    
T  9149813 aaagtcgcaaaatcctaaattttaggatttaagtcgggattttgaccacaat 9149864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 373 - 442
Target Start/End: Complemental strand, 7452488 - 7452419
Alignment:
Q  373 agtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||| ||||||||||| |||||  |||||| ||| ||||||| ||||||||| ||||||| |||||||||    
T  7452488 agtcgttgaaggtgaataaagttgcaaaattctggattttagaatttaagtcgggattttcacaacaatg 7452419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 366 - 443
Target Start/End: Original strand, 18459762 - 18459839
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatgt 443  Q
    |||||| |||| ||||| ||||| | |||| ||||||| || |||||||||||| |||| ||||||| ||||||||||    
T  18459762 ggatttgagtcgttgaaagtgaatacagtcgcaaaatcttggattttaggattttagtcgggatttttacaacaatgt 18459839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 442
Target Start/End: Original strand, 6347118 - 6347194
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||| |||| |||||||| || |||||  |||||||||| ||||||||||||||||  | |||||||||| ||||    
T  6347118 ggatttgagtcgttgaaggtaaataaagttgcaaaatcctggattttaggatttaagttggaattttgacaataatg 6347194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 437
Target Start/End: Complemental strand, 7815613 - 7815561
Alignment:
Q  385 tgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaa 437  Q
    |||| ||||||||||||| ||| ||||||||||||||||| ||||||| ||||    
T  7815613 tgaataaagtcacaaaatgctgtattttaggatttaagtcgggattttaacaa 7815561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 441
Target Start/End: Original strand, 9911477 - 9911541
Alignment:
Q  378 ttgaaggtgaagaaagtcacaaaatcctgaattttagga-tttaagtcaggattttgacaacaat 441  Q
    |||||||||||||||||  ||||||| |||||||||||| ||||| || |||||| |||||||||    
T  9911477 ttgaaggtgaagaaagttgcaaaatcttgaattttaggattttaaatcgggatttagacaacaat 9911541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 366 - 440
Target Start/End: Complemental strand, 17466154 - 17466080
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaa 440  Q
    |||||| |||| || ||| |||||||| || ||||||||| ||||||| |||||||||  | |||||||||||||    
T  17466154 ggatttgagtccttaaagatgaagaaaatcgcaaaatcctaaattttaagatttaagttggaattttgacaacaa 17466080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 442
Target Start/End: Original strand, 8744087 - 8744132
Alignment:
Q  397 caaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||||||||||||| ||||||||||| | |||| ||||||||||    
T  8744087 caaaatcctgaatttttggatttaagtcggaatttcgacaacaatg 8744132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 366 - 442
Target Start/End: Complemental strand, 29067359 - 29067283
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||| |||| |||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||    
T  29067359 ggatttgagtcgttgaaggtgaagaaagtcgcaaaatcctgaattttagaatttaagtcgggattttgacaacaatg 29067283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 366 - 442
Target Start/End: Complemental strand, 27676431 - 27676355
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||| |||||| ||||||||| |||||| |||||||||| |||||| ||||||||||||||||||||||||||||    
T  27676431 ggatttgagtcatagaaggtgaataaagtcgcaaaatcctgcattttacgatttaagtcaggattttgacaacaatg 27676355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 366 - 441
Target Start/End: Complemental strand, 20756114 - 20756039
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 441  Q
    |||||| |||||||||||||||||||| || |||||||||||||||||  ||||||||| ||||||||||||||||    
T  20756114 ggatttgagtcattgaaggtgaagaaaatcgcaaaatcctgaattttataatttaagtcgggattttgacaacaat 20756039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 3449357 - 3449419
Alignment:
Q  378 ttgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaa 440  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  3449357 ttgaaggtaaagaaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaacaa 3449419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 368 - 442
Target Start/End: Complemental strand, 28745843 - 28745769
Alignment:
Q  368 atttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||| |||| |||||||||||||||||| ||||||||| ||||||||||||||| || |||||||||||||||||    
T  28745843 atttgagtcgttgaaggtgaagaaagtcgcaaaatcctaaattttaggatttaaatcgggattttgacaacaatg 28745769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 366 - 442
Target Start/End: Original strand, 15806560 - 15806635
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||| |||||||||||||||| |||||| |||||| ||| ||| ||||||||||||| |||||||||||||||||    
T  15806560 ggatttgagtcattgaaggtgaataaagtcgcaaaattctggattgtaggatttaagtc-ggattttgacaacaatg 15806635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 378 - 442
Target Start/End: Original strand, 25870442 - 25870506
Alignment:
Q  378 ttgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||| ||||||||||||||||||| || |||||||||||||||||  ||||||||||||||||    
T  25870442 ttgaagatgaagaaagtcacaaaatcttggattttaggatttaagtcgagattttgacaacaatg 25870506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 366 - 441
Target Start/End: Original strand, 24649743 - 24649818
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 441  Q
    |||||| |||| |||||||||||| |||||| ||||||||  |||||| |||||||||| ||||||||||||||||    
T  24649743 ggatttgagtcgttgaaggtgaagcaagtcaaaaaatcctagattttacgatttaagtcgggattttgacaacaat 24649818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 366 - 442
Target Start/End: Original strand, 8156185 - 8156261
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||| |||||||||||||||| ||| ||  ||||| ||||||||||| ||||||||  |||||||||||||||||    
T  8156185 ggatttgagtcattgaaggtgaaaaaaatcgtaaaattctgaattttagaatttaagttgggattttgacaacaatg 8156261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 366 - 432
Target Start/End: Complemental strand, 21963504 - 21963438
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggatttt 432  Q
    |||||| |||| || |||||||||||||||  |||||| |||||||||||||||||||| |||||||    
T  21963504 ggatttgagtcgttcaaggtgaagaaagtcgtaaaatcttgaattttaggatttaagtcgggatttt 21963438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 366 - 432
Target Start/End: Complemental strand, 21985940 - 21985874
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggatttt 432  Q
    |||||| |||| || |||||||||||||||  |||||| |||||||||||||||||||| |||||||    
T  21985940 ggatttgagtcgttcaaggtgaagaaagtcgtaaaatcttgaattttaggatttaagtcgggatttt 21985874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 366 - 440
Target Start/End: Complemental strand, 28135797 - 28135723
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaa 440  Q
    |||||| ||||| |||| ||||| |||||| ||||||||||||||||| ||||||| || | |||||||||||||    
T  28135797 ggatttgagtcactgaaagtgaataaagtcgcaaaatcctgaattttacgatttaaatcggaattttgacaacaa 28135723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 367 - 441
Target Start/End: Original strand, 30727746 - 30727820
Alignment:
Q  367 gatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 441  Q
    ||||| |||| ||||||||||||||||||  ||||| | | |||||| |||||||||||||||||||| ||||||    
T  30727746 gatttgagtcgttgaaggtgaagaaagtcgtaaaattcaggattttaagatttaagtcaggattttgataacaat 30727820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 441
Target Start/End: Complemental strand, 22137338 - 22137278
Alignment:
Q  381 aaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 441  Q
    |||||||||||||||  || ||| |||||||||||||||||||||||||||| | ||||||    
T  22137338 aaggtgaagaaagtcgtaacatcttgaattttaggatttaagtcaggattttaaaaacaat 22137278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 373 - 436
Target Start/End: Complemental strand, 17064389 - 17064326
Alignment:
Q  373 agtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgaca 436  Q
    |||| ||||||||||| | | || ||||||||||||||||| |||||||||| |||||||||||    
T  17064389 agtcgttgaaggtgaacacaatcgcaaaatcctgaattttaagatttaagtcgggattttgaca 17064326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 368 - 442
Target Start/End: Original strand, 24620256 - 24620333
Alignment:
Q  368 atttaagtcattgaaggtgaagaaagtca---caaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||| |||| ||||||||||||||||||    ||||||| | |||||||||||||||||| | |||||||||||||||    
T  24620256 atttgagtcgttgaaggtgaagaaagtcgtcgcaaaatcttaaattttaggatttaagtcggaattttgacaacaatg 24620333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 442
Target Start/End: Complemental strand, 17796331 - 17796267
Alignment:
Q  378 ttgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    ||||||||||| ||||||||||||||||  |||||| |||||||||  | |||||||||| ||||    
T  17796331 ttgaaggtgaataaagtcacaaaatcctagattttatgatttaagttggaattttgacaataatg 17796267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 442
Target Start/End: Complemental strand, 19104771 - 19104707
Alignment:
Q  378 ttgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    ||||||||||| ||||||||||||||||  |||||| |||||||||  | |||||||||| ||||    
T  19104771 ttgaaggtgaataaagtcacaaaatcctagattttatgatttaagttggaattttgacaataatg 19104707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 442
Target Start/End: Original strand, 22356139 - 22356183
Alignment:
Q  398 aaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    ||||||||||||||||||||||||||| | ||||||| |||||||    
T  22356139 aaaatcctgaattttaggatttaagtcggaattttgataacaatg 22356183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 437
Target Start/End: Complemental strand, 42696910 - 42696870
Alignment:
Q  397 caaaatcctgaattttaggatttaagtcaggattttgacaa 437  Q
    ||||||||||||||||| |||||||||| ||||||||||||    
T  42696910 caaaatcctgaattttatgatttaagtcgggattttgacaa 42696870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 419
Target Start/End: Original strand, 10873000 - 10873053
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggattt 419  Q
    |||||| |||| ||||||||||| ||  ||||||||||||| ||||||||||||    
T  10873000 ggatttgagtcgttgaaggtgaataatatcacaaaatcctggattttaggattt 10873053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 442
Target Start/End: Complemental strand, 17796440 - 17796376
Alignment:
Q  378 ttgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||| |||| ||||||  ||||||||  |||||| |||||||||| | |||||||||||||||    
T  17796440 ttgaagatgaataaagtcgtaaaatcctagattttatgatttaagtcggaattttgacaacaatg 17796376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 442
Target Start/End: Complemental strand, 19104880 - 19104816
Alignment:
Q  378 ttgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||| |||| ||||||  ||||||||  |||||| |||||||||| | |||||||||||||||    
T  19104880 ttgaagatgaataaagtcgtaaaatcctagattttatgatttaagtcggaattttgacaacaatg 19104816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 366 - 442
Target Start/End: Original strand, 26281363 - 26281439
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||| |||| |||||||||||||||||| ||||||||||||||||| |||||||||| | |||||||||||||||    
T  26281363 ggatttgagtcgttgaaggtgaagaaagtcgcaaaatcctgaattttatgatttaagtcggaattttgacaacaatg 26281439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 366 - 440
Target Start/End: Complemental strand, 5058604 - 5058530
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaa 440  Q
    ||||||| ||| ||||||||||||||| || |||||| ||||||||||||||||||||| |||||||||||||||    
T  5058604 ggatttaggtcgttgaaggtgaagaaaatcgcaaaattctgaattttaggatttaagtcgggattttgacaacaa 5058530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 384 - 441
Target Start/End: Original strand, 44944921 - 44944978
Alignment:
Q  384 gtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 441  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  44944921 gtgaagaaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaacaat 44944978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 378 - 442
Target Start/End: Original strand, 8330111 - 8330175
Alignment:
Q  378 ttgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||||||||||||||| ||||||| |||||||||| ||||| |||||||||||||||||||||    
T  8330111 ttgaaggtgaagaaagtcgcaaaatcatgaattttagaatttaggtcaggattttgacaacaatg 8330175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 366 - 441
Target Start/End: Complemental strand, 4247431 - 4247356
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 441  Q
    ||||||||||  ||||| ||||||||||| |||||||||||||||||||||||||| |  ||||||||||||||||    
T  4247431 ggatttaagttgttgaaagtgaagaaagttacaaaatcctgaattttaggatttaaattgggattttgacaacaat 4247356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 366 - 441
Target Start/End: Complemental strand, 11326461 - 11326386
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 441  Q
    |||||| ||||  ||||||||||||||||| ||||||||| |||||||||||||||||  ||||||||||||||||    
T  11326461 ggattttagtcgctgaaggtgaagaaagtcgcaaaatcctaaattttaggatttaagttgggattttgacaacaat 11326386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 378 - 441
Target Start/End: Original strand, 22687730 - 22687793
Alignment:
Q  378 ttgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 441  Q
    |||||| ||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||    
T  22687730 ttgaagttgaagaaagtcgcaaattcctgaattttaggatttaagtcgggattttgacaacaat 22687793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 381 - 443
Target Start/End: Original strand, 7730412 - 7730473
Alignment:
Q  381 aaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatgt 443  Q
    ||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||    
T  7730412 aaggtgaagaaagtcgcaaaa-cctggattttaggatttaagtcaggattttgacaacaatgt 7730473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 368 - 441
Target Start/End: Complemental strand, 5715362 - 5715290
Alignment:
Q  368 atttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 441  Q
    ||||||||  ||||||||| | |||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  5715362 atttaagttgttgaaggtgta-aaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaacaat 5715290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 366 - 439
Target Start/End: Original strand, 8346587 - 8346660
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaaca 439  Q
    |||||| |||| |||||||||||||||||| ||||||||| |||||||  ||||| ||||||||||||||||||    
T  8346587 ggatttgagtcgttgaaggtgaagaaagtcgcaaaatcctaaattttaatatttaggtcaggattttgacaaca 8346660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 366 - 443
Target Start/End: Complemental strand, 39182334 - 39182258
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatgt 443  Q
    |||||| |||| |||||||||||||| ||| |||||||||  |||||||||||||||||||||||||| |||||||||    
T  39182334 ggatttcagtcgttgaaggtgaagaa-gtcgcaaaatcctagattttaggatttaagtcaggattttgtcaacaatgt 39182258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 366 - 442
Target Start/End: Original strand, 8343854 - 8343930
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||| |||| |||||||||||||||||| |||||||| | ||||||||||||| | || ||||||||||||||||    
T  8343854 ggatttgagtcgttgaaggtgaagaaagtcgcaaaatccaggattttaggatttaggccaagattttgacaacaatg 8343930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 366 - 442
Target Start/End: Original strand, 9685298 - 9685374
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||| |||| ||||||||||| |||||| ||||||||| ||||||||||| ||||||  ||||||||||||||||    
T  9685298 ggatttgagtcgttgaaggtgaaaaaagtcgcaaaatcctaaattttaggatataagtcgagattttgacaacaatg 9685374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 378 - 442
Target Start/End: Original strand, 24725543 - 24725607
Alignment:
Q  378 ttgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    ||||||||||||||||||  |||||| || ||||||||||||||||| |||||||||||||||||    
T  24725543 ttgaaggtgaagaaagtcgtaaaatcttggattttaggatttaagtctggattttgacaacaatg 24725607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 366 - 441
Target Start/End: Original strand, 24990125 - 24990200
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 441  Q
    |||||| |||| ||| |||| ||||||||||||||||||| |||||| ||||||||||| | ||||||||||||||    
T  24990125 ggatttgagtcgttggaggtaaagaaagtcacaaaatcctaaatttttggatttaagtcggaattttgacaacaat 24990200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 366 - 432
Target Start/End: Complemental strand, 11325054 - 11324988
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggatttt 432  Q
    |||||| |||| ||||||||||||||| || ||||||| |||||||||||||||||||| |||||||    
T  11325054 ggatttgagtcgttgaaggtgaagaaaatcccaaaatcatgaattttaggatttaagtcgggatttt 11324988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 368 - 442
Target Start/End: Original strand, 26617532 - 26617606
Alignment:
Q  368 atttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    ||||| ||| ||||||||||| |||||| |||||||||||||||||||||| ||||||| ||||| | |||||||    
T  26617532 atttatgtcgttgaaggtgaaaaaagtcgcaaaatcctgaattttaggattaaagtcagaattttcaaaacaatg 26617606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 368 - 442
Target Start/End: Complemental strand, 27221491 - 27221417
Alignment:
Q  368 atttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||| |||| |||||| ||||||||||| |||||||||||||||||| ||||||||  ||||||| |||||||||    
T  27221491 atttgagtcgttgaagatgaagaaagtcgcaaaatcctgaattttagaatttaagttgggattttaacaacaatg 27221417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 443
Target Start/End: Complemental strand, 8571318 - 8571241
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatgt 443  Q
    |||||| |||| || ||||||||||||||| |||||||||| |||||| |||||||||| ||||||||| ||| ||||    
T  8571318 ggatttgagtcgttaaaggtgaagaaagtcgcaaaatcctggattttatgatttaagtcgggattttgagaactatgt 8571241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 380 - 441
Target Start/End: Complemental strand, 30294236 - 30294175
Alignment:
Q  380 gaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 441  Q
    ||||||||| ||| ||||||||||||| ||||||||||||||||  ||||||||||||||||    
T  30294236 gaaggtgaataaaatcacaaaatcctggattttaggatttaagttgggattttgacaacaat 30294175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 373 - 441
Target Start/End: Original strand, 21846487 - 21846554
Alignment:
Q  373 agtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 441  Q
    |||| ||||| ||||| |||||| |||||||||||||||||| ||||||||| ||||||||||||||||    
T  21846487 agtcgttgaatgtgaa-aaagtcgcaaaatcctgaattttagaatttaagtcgggattttgacaacaat 21846554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 367 - 442
Target Start/End: Complemental strand, 14055325 - 14055250
Alignment:
Q  367 gatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    ||||| |||| |||||||||||||||||| ||||||| || |||||||||| |||||  ||||||| |||||||||    
T  14055325 gatttgagtcgttgaaggtgaagaaagtcgcaaaatcttggattttaggatataagtggggattttcacaacaatg 14055250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 367 - 442
Target Start/End: Complemental strand, 14365353 - 14365278
Alignment:
Q  367 gatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    ||||| |||| |||||||||||||||||| ||||||| || |||||||||| |||||  ||||||| |||||||||    
T  14365353 gatttgagtcgttgaaggtgaagaaagtcgcaaaatcttggattttaggatataagtggggattttcacaacaatg 14365278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 442
Target Start/End: Original strand, 26565700 - 26565758
Alignment:
Q  384 gtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    ||||| ||||| ||||||| |||||||||| |||||||| ||| |||||||||||||||    
T  26565700 gtgaataaagttacaaaattctgaattttatgatttaaggcagaattttgacaacaatg 26565758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 379 - 424
Target Start/End: Original strand, 17809440 - 17809485
Alignment:
Q  379 tgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtc 424  Q
    |||||||||  ||||||||||||||||||||||| |||||||||||    
T  17809440 tgaaggtgagtaaagtcacaaaatcctgaattttgggatttaagtc 17809485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 442
Target Start/End: Original strand, 21157852 - 21157904
Alignment:
Q  390 aaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||| ||||| ||||||||||| |||||||||||| |||| ||||||||||    
T  21157852 aaagtcgcaaaaccctgaattttaagatttaagtcagaatttcgacaacaatg 21157904  T

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Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 437
Target Start/End: Complemental strand, 4574534 - 4574475
Alignment:
Q  378 ttgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaa 437  Q
    ||||||||||  |||||| |||||| ||| |||||||||||||||||| |||||| ||||    
T  4574534 ttgaaggtgagtaaagtcgcaaaattctggattttaggatttaagtcatgattttcacaa 4574475  T

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Target: scaffold0186 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 367 - 442
Target Start/End: Complemental strand, 8517 - 8442
Alignment:
Q  367 gatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||||||| |||||||||||||||||| ||||||| || ||||||||||||||||  |||||||||||||||||    
T  8517 gatttaagtcgttgaaggtgaagaaagtcgcaaaatcgtggattttaggatttaagtagggattttgacaacaatg 8442  T

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Target: scaffold0510 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 443
Target Start/End: Original strand, 155 - 232
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatgt 443  Q
    |||||| |||| ||||| |||||||||||| |||||||||| ||||||||||||||||| |||| ||  |||||||||    
T  155 ggatttgagtcgttgaacgtgaagaaagtcgcaaaatcctgcattttaggatttaagtcgggatcttatcaacaatgt 232  T

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Target: scaffold0603 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 366 - 442
Target Start/End: Original strand, 9074 - 9150
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||| |||| ||||||||||| ||| ||||||||||||  ||||||  |||||| ||||||||||||||||||||    
T  9074 ggatttgagtcgttgaaggtgaataaaatcacaaaatcctacattttaaaatttaaatcaggattttgacaacaatg 9150  T

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Target: scaffold0417 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 378 - 442
Target Start/End: Original strand, 7521 - 7585
Alignment:
Q  378 ttgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||||| ||||||||| |||||||||||||||||| ||||||||| ||||| | |||||||||    
T  7521 ttgaaggtaaagaaagtcgcaaaatcctgaattttagaatttaagtcgggattctaacaacaatg 7585  T

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Target: scaffold0042 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 443
Target Start/End: Original strand, 93789 - 93835
Alignment:
Q  397 caaaatcctgaattttaggatttaagtcaggattttgacaacaatgt 443  Q
    |||||| ||| ||||||||||||||||| ||||||||||||||||||    
T  93789 caaaattctggattttaggatttaagtcgggattttgacaacaatgt 93835  T

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Target: scaffold0048 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 442
Target Start/End: Original strand, 48842 - 48918
Alignment:
Q  366 ggatttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    |||||| |||| ||||||||||| |||||  |||||| ||  ||||||||||||||||| | ||||| |||||||||    
T  48842 ggatttgagtcgttgaaggtgaataaagttgcaaaattctagattttaggatttaagtcggaattttcacaacaatg 48918  T

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Target: scaffold0115 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 441
Target Start/End: Original strand, 35115 - 35188
Alignment:
Q  368 atttaagtcattgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaat 441  Q
    |||| |||| || |||||||| |||||  ||||||  |||||||||| |||||||||  |||||||||||||||    
T  35115 atttgagtcgttaaaggtgaataaagttccaaaattatgaattttagaatttaagtcgagattttgacaacaat 35188  T

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Target: scaffold0036 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 442
Target Start/End: Original strand, 37232 - 37296
Alignment:
Q  378 ttgaaggtgaagaaagtcacaaaatcctgaattttaggatttaagtcaggattttgacaacaatg 442  Q
    ||||||||||| ||| |  |||||| ||||||||||  ||||||||| | |||||||||||||||    
T  37232 ttgaaggtgaataaaattgcaaaattctgaattttaaaatttaagtcggcattttgacaacaatg 37296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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