View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19316_low_4 (Length: 487)
Name: NF19316_low_4
Description: NF19316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19316_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 8 - 471
Target Start/End: Original strand, 42285922 - 42286385
Alignment:
| Q |
8 |
ttgttgtgcaattcccattgaagcctcacaccaactccttgagtcataaaaagcaatgtttatataaaccttaccgtttcatatctagtttcctttggct |
107 |
Q |
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| T |
42285922 |
ttgttttgcaattccctttgaagtctcacaccaacttcttgaggcataaaaagcaaagttgatataaaccttaccgtttcatatctagtttcctttggct |
42286021 |
T |
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| Q |
108 |
tctgagtaaaaggcttgattgattgtgatgctatgaccctatttgagtagaaaagttgaatatataaagactcaaacttcacatgaacttttctattggg |
207 |
Q |
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| T |
42286022 |
tctgagtaaaaggcttgattgattgtgatgctatgaccctatttgagtagaaaagttgaatatataaagactcaaacttcacatgaacttttctattggg |
42286121 |
T |
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| Q |
208 |
attagaaaaatttgcttgaagagcgaaatcaccattgaagtattgttttgagtcaaaatatacaacatttaggcttgcattagaaatatcaaataaaggg |
307 |
Q |
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| T |
42286122 |
attagaaaaatttgcttgaagagcgaaatcaccattgaagtattgttttgagtcaaaatatacaacatttaggcttgcattagaaatatcaaataaaggg |
42286221 |
T |
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| Q |
308 |
ttgcttggtttgagtgtaaggtaacaaataattgttgcaattccaaagaagataagtgtaaagctgaatatgaaacatagtattgcagcaaaccatacaa |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42286222 |
ttgcttggtttgagtgtaaggtaacaaataattgttgcaattccaaagaagataagtgtaaagctgaatatgaaacatagtattgcagcaaaccatacaa |
42286321 |
T |
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| Q |
408 |
ttggtttggtcttttgttggtcatcaaccttaagtattgctaactttcttgatgatcttgttct |
471 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42286322 |
ttggtttggtcttttgttggtcatcaaccttaagtattgctaactttcttgatgatcttgttct |
42286385 |
T |
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