View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19316_low_5 (Length: 464)
Name: NF19316_low_5
Description: NF19316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19316_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 312
Target Start/End: Complemental strand, 4457901 - 4457606
Alignment:
| Q |
17 |
aaagggaatgcaatgtttgtcgttgtagtggttaggtatgataacctaccaataagccttctataagaagaatgattagggtaagatgggctaccttcac |
116 |
Q |
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| T |
4457901 |
aaagggaatgcaatgtttgtcgttgtagtggttaggtatgataacctaccaataagccttctataagaagaatgattagggtaagatgggctaccttcac |
4457802 |
T |
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| Q |
117 |
tgcttaatatgatggaaggattacatggggtagtaacaggtttttcataaagaattccactatcataaagaaattctaatgtgtattttctttgattcaa |
216 |
Q |
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| T |
4457801 |
tgcttaatttgatggaaggattacatggggtagtaacaggtttttcataaagaattccactatcataaagaagttctaatgtgtattttctttgattcaa |
4457702 |
T |
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| Q |
217 |
agttgtcccacctttggatcttgccacctgaagaccaagaaagaaacatatgggatcaagatccttaatctgaaactgtgtatcaagaatatactt |
312 |
Q |
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| T |
4457701 |
agctgtcccacctttagatcttgccacctcaagaccaagaaagaaacatatgggaccaagatccttaatctgaaactgtgtatcaagaatatactt |
4457606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 307 - 452
Target Start/End: Complemental strand, 4403677 - 4403532
Alignment:
| Q |
307 |
atacttgatatgcttaatttctatcatggaatttccagctaagactatgtcatcaacatagactagtaaagccacaaaacacgatgttgaggcttttacg |
406 |
Q |
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|||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4403677 |
atacttgatatgattaatttctgtcatgaaatttccagctaagactatgtcatcaacatagactagtaaagccacaaaagacgatgttgaggcttttacg |
4403578 |
T |
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| Q |
407 |
aacatagaatggtcaacttgagactgagaactaaccaaaaagagaa |
452 |
Q |
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| T |
4403577 |
agcatagaatagtccgcttgagactgagaacaaaccaaaaagagaa |
4403532 |
T |
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