View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19316_low_6 (Length: 450)

Name: NF19316_low_6
Description: NF19316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19316_low_6
NF19316_low_6
[»] chr4 (4 HSPs)
chr4 (10-434)||(30917952-30918371)
chr4 (110-221)||(41945160-41945270)
chr4 (110-221)||(26988892-26989004)
chr4 (131-283)||(45195724-45195876)
[»] chr6 (3 HSPs)
chr6 (113-196)||(34949055-34949139)
chr6 (113-221)||(9929348-9929454)
chr6 (109-221)||(29389107-29389220)
[»] chr2 (3 HSPs)
chr2 (109-197)||(22417311-22417393)
chr2 (115-221)||(38308027-38308134)
chr2 (148-221)||(43050166-43050239)
[»] chr1 (1 HSPs)
chr1 (130-221)||(48400966-48401062)
[»] chr8 (1 HSPs)
chr8 (183-221)||(39555911-39555949)
[»] chr7 (2 HSPs)
chr7 (135-197)||(3255099-3255161)
chr7 (110-221)||(35356316-35356428)
[»] chr5 (1 HSPs)
chr5 (183-221)||(8217158-8217196)
[»] scaffold0071 (1 HSPs)
scaffold0071 (149-221)||(44-116)
[»] chr3 (3 HSPs)
chr3 (149-221)||(15462076-15462148)
chr3 (110-170)||(21313509-21313569)
chr3 (110-221)||(22318239-22318351)


Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 10 - 434
Target Start/End: Complemental strand, 30918371 - 30917952
Alignment:
Q  10 tcaaaggtaacaacaaaatctaaaatgaagaaataaagcccaataaggcccgattggcagtgaaaagagtccaacaaatatcagatccaatttcaataga 109  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30918371 tcaaaggtaacaaaaaaatctaaaatgaagaaataaagcccaatatggcccaattggcagtgaaaagagtccaacaaatatcagatccaatttcaataga 30918272  T
Q  110 actccttcttttcccacccaattgatttctcgtacgctctatgcagttcgggttatataattcaaacggcatgaacaccctataaaaatctaaaaaacac 209  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||| ||||||||    
T  30918271 actccttcttttcccaccctattgatttctcgtacgctctatgcagttcgggttatataattcaaacggcatgaacac-----aaaaatctcaaaaacac 30918177  T
Q  210 gttaaaacattttgtattatagaacgcgtatacggtgagcgagaaacttacaagataggaaaagtaatgacatttcaatagtctgatcatagtggtaagt 309  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30918176 gttaaaacattttgtattatagaacgcgaatacggtgagcgataaaattacaagataggaaaagtaatgacatttcaatagtctgatcatagtggtaagt 30918077  T
Q  310 tgctaagagaaagagatacatagcaatgacaaacttggagtatatgtgtgaatttagcaggggttatcacatattttagcaaagtttttgcaaaataaag 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30918076 tgctaagagaaagagatacatagcaatgacaaacttggagtatatgtgtgaatttagcaggggttatcacatattttagcatagtttttgcaaaataaag 30917977  T
Q  410 atatgaaagatgcctaccacatttt 434  Q
    |||||||||||||||| ||||||||    
T  30917976 atatgaaagatgcctagcacatttt 30917952  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 110 - 221
Target Start/End: Original strand, 41945160 - 41945270
Alignment:
Q  110 actccttcttttcccacccaattgatttctcgtacgctctatgcagttcgggttatataattcaaacggcatgaacaccctataaaaatctaaaaaacac 209  Q
    ||||||||||||||||||| ||| ||||| ||| |||  |||||||||||| ||||||||| | |||| ||| ||||||| ||||||| ||  ||||||     
T  41945160 actccttcttttcccacccgattaatttcccgtgcgcgttatgcagttcggattatataatccgaacgacataaacaccc-ataaaaaccttcaaaacat 41945258  T
Q  210 gttaaaacattt 221  Q
    ||||||||||||    
T  41945259 gttaaaacattt 41945270  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 221
Target Start/End: Original strand, 26988892 - 26989004
Alignment:
Q  110 actccttcttttcccacccaattgatttctcgtacgctctatgcagttcgggttatataattcaaac-ggcatgaacaccctataaaaatctaaaaaaca 208  Q
    ||||||||||||||||||| ||||||||||||  ||| || ||||||| ||  |||| ||| | ||| |||||  |||||| ||||||| ||  ||||||    
T  26988892 actccttcttttcccaccctattgatttctcgcgcgccctgtgcagtttggactatagaatccgaacgggcatatacaccccataaaaaccttcaaaaca 26988991  T
Q  209 cgttaaaacattt 221  Q
    |||||||||||||    
T  26988992 cgttaaaacattt 26989004  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 283
Target Start/End: Original strand, 45195724 - 45195876
Alignment:
Q  131 ttgatttctcgtacgctctatgcagttcgggttatataattcaaacggcatgaacaccctataaaaatctaaaaaacacgttaaaacattttgtattata 230  Q
    ||||||| ||| |||||| ||| |||| || ||||||||||| |||| ||| |||| | |||||||||||  |||| |||||||||||||| | ||| ||    
T  45195724 ttgatttatcgcacgctcgatgtagtttggattatataattcgaacgacataaacatcttataaaaatctccaaaatacgttaaaacatttcgaatttta 45195823  T
Q  231 gaacgcgtatacggtgagcgagaaacttacaagataggaaaagtaatgacatt 283  Q
    |||  |  ||| || | |||||||||| | | ||||| |||| ||||||||||    
T  45195824 gaattcaaataaggcgtgcgagaaactcataggatagaaaaaataatgacatt 45195876  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 113 - 196
Target Start/End: Complemental strand, 34949139 - 34949055
Alignment:
Q  113 ccttcttttcccacccaattga-tttctcgtacgctctatgcagttcgggttatataattcaaacggcatgaacaccctataaaa 196  Q
    |||||||||||||||| ||||| |||||||| | ||||||||||||  | |||||||||||||| ||||| ||||||||||||||    
T  34949139 ccttcttttcccaccctattgaatttctcgtgcactctatgcagtttagattatataattcaaatggcataaacaccctataaaa 34949055  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 221
Target Start/End: Complemental strand, 9929454 - 9929348
Alignment:
Q  113 ccttcttttcccacccaattgatttctcgtacgctctatgcagttcgggttatataattcaaacggcatgaacaccctataaaaatctaaaaaacacgtt 212  Q
    ||||||||||  |||| ||||||||||||  ||| ||||||||||||| ||||| ||||| |||| ||| ||||||  ||||||| ||  ||||||||||    
T  9929454 ccttcttttcataccctattgatttctcg--cgccctatgcagttcggattatagaattcgaacgtcataaacacctcataaaaacctccaaaacacgtt 9929357  T
Q  213 aaaacattt 221  Q
     ||| ||||    
T  9929356 gaaagattt 9929348  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 29389107 - 29389220
Alignment:
Q  109 aactccttcttttcccacccaattgatttctcgtacgctctatgcagttcgggttatataattcaaacggcatgaacaccctataaaaatc-taaaaaac 207  Q
    |||| ||||||||||||||| ||   ||||||| |||  |||| |||||||| ||||| ||| | ||| |||| ||||||| ||||||| | | ||||||    
T  29389107 aactacttcttttcccaccctatgagtttctcgcacgtcctatacagttcggattataaaatccgaacagcataaacacccaataaaaaccttcaaaaac 29389206  T
Q  208 acgttaaaacattt 221  Q
    ||||| ||||||||    
T  29389207 acgttgaaacattt 29389220  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 197
Target Start/End: Complemental strand, 22417393 - 22417311
Alignment:
Q  109 aactccttcttttcccacccaattgatttctcgtacgctctatgcagttcgggttatataattcaaacggcatgaacaccctataaaaa 197  Q
    |||||||||||||||||| | ||||||||||||  ||       |||||||| ||||||||| |||||||||| |||||||||||||||    
T  22417393 aactccttcttttcccactctattgatttctcgcgcgt------cagttcggattatataatccaaacggcataaacaccctataaaaa 22417311  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 221
Target Start/End: Original strand, 38308027 - 38308134
Alignment:
Q  115 ttcttttcccacccaattgatttctcgtacgctctatgcagttcgggttatataattcaaacggcatgaacaccctataaaaa-tctaaaaaacacgtta 213  Q
    |||||||||||||| ||| |||||||||  |   ||||||||| |  ||||| ||| | |||||||| ||||||||||||||| | | |||||||||||     
T  38308027 ttcttttcccaccctattaatttctcgtgtgtcttatgcagtttgaattatagaatccgaacggcataaacaccctataaaaactttcaaaaacacgttg 38308126  T
Q  214 aaacattt 221  Q
    ||||||||    
T  38308127 aaacattt 38308134  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 221
Target Start/End: Complemental strand, 43050239 - 43050166
Alignment:
Q  148 ctatgcagttcgggttatataattcaaacggcatgaacaccctataaaaatctaaaaaacacgttaaaacattt 221  Q
    ||||||||||||| ||||| ||| |||||| ||| || ||||| |||||| ||  |||||||||| ||||||||    
T  43050239 ctatgcagttcggattatagaatccaaacgacataaataccctgtaaaaacctccaaaacacgttgaaacattt 43050166  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 221
Target Start/End: Complemental strand, 48401062 - 48400966
Alignment:
Q  130 attgatttctcgtacgctctatgcagttcgggttatataattcaa-----acggcatgaacaccctataaaaatctaaaaaacacgttaaaacattt 221  Q
    |||||||||| | |||| |||||||||| || |||||||||  ||     ||||||| ||||||||||||||| ||  |||||||||||||||||||    
T  48401062 attgatttctggcacgcactatgcagtttggattatataataaaattcggacggcataaacaccctataaaaacctccaaaacacgttaaaacattt 48400966  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 39555949 - 39555911
Alignment:
Q  183 aacaccctataaaaatctaaaaaacacgttaaaacattt 221  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  39555949 aacaccctataaaaatctcaaaaacacgttgaaacattt 39555911  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 197
Target Start/End: Original strand, 3255099 - 3255161
Alignment:
Q  135 tttctcgtacgctctatgcagttcgggttatataattcaaacggcatgaacaccctataaaaa 197  Q
    ||||||||  |||||||||||||||| |||||||||   |||||||| ||||||| |||||||    
T  3255099 tttctcgtgtgctctatgcagttcggattatataatcagaacggcataaacaccccataaaaa 3255161  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 221
Target Start/End: Original strand, 35356316 - 35356428
Alignment:
Q  110 actccttcttttcccacccaat--tgatttctcgtacgctctatgcagttcgggttatataattcaaacggcatgaacaccctataaaaatctaaaaaac 207  Q
    ||||||| ||||||||||| ||  ||||||| || | || ||||||||||||| ||||||||| | |||| | | || |||| ||||||| ||  |||||    
T  35356316 actcctttttttcccaccctatattgatttcacgcatgccctatgcagttcggattatataatccgaacgacgt-aaaaccccataaaaacctccaaaac 35356414  T
Q  208 acgttaaaacattt 221  Q
    ||||||||||||||    
T  35356415 acgttaaaacattt 35356428  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 8217196 - 8217158
Alignment:
Q  183 aacaccctataaaaatctaaaaaacacgttaaaacattt 221  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  8217196 aacaccccataaaaatctcaaaaacacgttaaaacattt 8217158  T

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Target: scaffold0071 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 44 - 116
Alignment:
Q  149 tatgcagttcgggttatataattcaaacggcatgaacaccctataaaaatctaaaaaacacgttaaaacattt 221  Q
    |||||||||||  ||||| ||| |||||||||| ||||||| ||||||| ||  |||||||||| ||| ||||    
T  44 tatgcagttcgaattatagaatccaaacggcataaacaccccataaaaacctctaaaacacgtttaaatattt 116  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 15462148 - 15462076
Alignment:
Q  149 tatgcagttcgggttatataattcaaacggcatgaacaccctataaaaatctaaaaaacacgttaaaacattt 221  Q
    |||||||||||  ||||| ||| |||||||||| ||||||| ||||||| ||  |||||||||| ||| ||||    
T  15462148 tatgcagttcgaattatagaatccaaacggcataaacaccccataaaaacctctaaaacacgtttaaatattt 15462076  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 21313569 - 21313509
Alignment:
Q  110 actccttcttttcccacccaattgatttctcgtacgctctatgcagttcgggttatataat 170  Q
    ||||||||||||||||||  ||||||||||||  ||  ||||| ||||||| |||||||||    
T  21313569 actccttcttttcccaccgtattgatttctcgcgcgtcctatgtagttcggattatataat 21313509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 221
Target Start/End: Complemental strand, 22318351 - 22318239
Alignment:
Q  110 actccttcttttcccacccaattgatttctcgtacgctc-tatgcagttcgggttatataattcaaacggcatgaacaccctataaaaatctaaaaaaca 208  Q
    |||||||||||| ||| || |||||||||||| || | | |||||||||||| ||||| ||||| ||  |||| |||| |  ||||||| ||  ||||||    
T  22318351 actccttctttttccatcctattgatttctcgcacacccctatgcagttcggattatagaattcgaatagcataaacatctcataaaaaccttcaaaaca 22318252  T
Q  209 cgttaaaacattt 221  Q
     ||||||||||||    
T  22318251 tgttaaaacattt 22318239  T

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