View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19317_high_1 (Length: 432)
Name: NF19317_high_1
Description: NF19317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19317_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 1e-82; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 2 - 165
Target Start/End: Original strand, 8136231 - 8136394
Alignment:
| Q |
2 |
gaggcatgtgagtgtggagaaataggtatagtatccaagtaggaggcaaataacttattgcatttggcatatgtgacttgtgttcattatatttctttga |
101 |
Q |
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| T |
8136231 |
gaggtatgtgagtgtggagaaataggtataatatccaagtaggaggcaaataacttattgcatttggcatatgtgacttgtgttcattatatttctttga |
8136330 |
T |
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| Q |
102 |
gtaaattagcattttgacccattaaattataaatgtaaacgttctttaaacttctaaaatttta |
165 |
Q |
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| T |
8136331 |
gtaaattagcattttgacccattaaattataaatgtaaacgttctttaaacttctaaaatttta |
8136394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 225 - 326
Target Start/End: Original strand, 8136522 - 8136623
Alignment:
| Q |
225 |
tgtgcgtttgagagcctttggaattgataatagagaagctacaatgtaggaatctcttcaaacgcacgttcacaacaaattcaccgtcaatacaaattta |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8136522 |
tgtgcgtttgagagcctttggaattgataatagagaagctacaatgtaggaatctcttcaaacgcacgttcacaacaaattcaccgtcaatacaaatata |
8136621 |
T |
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| Q |
325 |
ga |
326 |
Q |
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|| |
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| T |
8136622 |
ga |
8136623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 315 - 417
Target Start/End: Original strand, 8136642 - 8136744
Alignment:
| Q |
315 |
tacaaatttagaacatcagtacaagtttaactaatacaatatctaaccaactttggtgtagctatagacagcaggattggaaagagtttagttattagaa |
414 |
Q |
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| T |
8136642 |
tacaaatttaaaacatcagtacaagtttaactaatacaatatctaaccaactttggtgtagctatagacaacaggattggaaagagtttagttattggaa |
8136741 |
T |
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| Q |
415 |
act |
417 |
Q |
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||| |
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| T |
8136742 |
act |
8136744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 82 - 137
Target Start/End: Original strand, 8135016 - 8135071
Alignment:
| Q |
82 |
tgttcattatatttctttgagtaaattagcattttgacccattaaattataaatgt |
137 |
Q |
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| T |
8135016 |
tgttcagtctatttctttgcgtaaattagcattttgacccatgaaattataaatgt |
8135071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 194 - 320
Target Start/End: Complemental strand, 22179260 - 22179133
Alignment:
| Q |
194 |
tgtgtttgttttgacgtttcatcattgccattgtgcgtttgagagcctttggaattgataatagagaagctacaa--tgtaggaatctcttcaaacgcac |
291 |
Q |
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| T |
22179260 |
tgtgtttgttttgccgtttcaccactgccactgtgcgtttgagagccttgagaattgataatagagaagccacaaattgtagg-atctctcctaatgcac |
22179162 |
T |
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| Q |
292 |
gttcacaacaaattcaccgtcaatacaaa |
320 |
Q |
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|||||| | |||| ||||| ||| ||||| |
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| T |
22179161 |
gttcacgagaaatccaccgccaacacaaa |
22179133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 320
Target Start/End: Complemental strand, 47336553 - 47336462
Alignment:
| Q |
230 |
gtttgagagcctttggaattgataatagagaagctacaa--tgtaggaatctcttcaaacgcacgttcacaacaaattcaccgtcaatacaaa |
320 |
Q |
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||||||||||||| | ||||||||||||||||||||||| |||| | |||||| |||||||| || ||||||||| || | |||||||||| |
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| T |
47336553 |
gtttgagagccttggaaattgataatagagaagctacaaattgtatg-atctctcgaaacgcacttttacaacaaatccatcctcaatacaaa |
47336462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 320
Target Start/End: Original strand, 32436040 - 32436164
Alignment:
| Q |
197 |
gtttgttttgacgtttcatcattgccattgtgcgtttgagagcctttggaattgataatagagaagctacaatgta-ggaatctcttcaaacgcacgttc |
295 |
Q |
| |
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|||||||||||||||||| |||| | |||| ||||||||| ||| |||||| ||||||||||||||| || || | |||||| |||||| ||||| |
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| T |
32436040 |
gtttgttttgacgtttcaccattattactgtgtgtttgagagtcttgggaattaataatagagaagctagaagttatagtatctctctaaacgctcgttc |
32436139 |
T |
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| Q |
296 |
acaacaaattcaccgtcaatacaaa |
320 |
Q |
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||||||||| |||| ||||||||| |
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| T |
32436140 |
acaacaaatctaccgccaatacaaa |
32436164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 316
Target Start/End: Complemental strand, 40195823 - 40195783
Alignment:
| Q |
276 |
atctcttcaaacgcacgttcacaacaaattcaccgtcaata |
316 |
Q |
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|||||| |||||||||||||||||||||| ||||| ||||| |
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| T |
40195823 |
atctctccaaacgcacgttcacaacaaatccaccgccaata |
40195783 |
T |
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