View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19317_high_2 (Length: 384)
Name: NF19317_high_2
Description: NF19317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19317_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 7 - 362
Target Start/End: Original strand, 63720 - 64076
Alignment:
| Q |
7 |
atttgatcaaatgtttcttatcatacttttaatgctactcacctccctatatcatacaaacaatctccttgtcnnnnnnnnnn-catacaaacaatctca |
105 |
Q |
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| T |
63720 |
atttgatcaaatgtttcttatcatacttttaatgctactgacctccctatatcatacaaacaatctccttgtcaaaaaaaaaaacatacaaacaatctca |
63819 |
T |
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| Q |
106 |
attgactcaccaactcatatcttaaataggagtacccatgtctggcctgtggattaagattcatgcctgtatatggcccatatgggtcaccttatattgg |
205 |
Q |
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| T |
63820 |
attgactcaccaactcatatcttaaataggagtacccatgtctggcctttggattaagattcatgcctgtatatggcccatatgggtcaccttatattgg |
63919 |
T |
|
| Q |
206 |
ttgtttaatcgttttctcaacgaaaaaatgaatagtaatggtttagttccaaaaggtttcttctgtacaccgtgtggttcaactcataacacgtattaag |
305 |
Q |
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| T |
63920 |
ttgtttaatcgttttctcaacgaaaaaatgaatagtaatggtttagttccaaaaggtttcttctgtacaccgtgcggttcaactcataacacgtattaag |
64019 |
T |
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| Q |
306 |
acatgtactatagattgaaagtacactttttggatctaaaataggtatccatcaaca |
362 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
64020 |
acatgtactatagattgaaagtacactttttggatctaaaataggtatccatcaaca |
64076 |
T |
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