View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19317_low_2 (Length: 429)
Name: NF19317_low_2
Description: NF19317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19317_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 17 - 377
Target Start/End: Original strand, 39681134 - 39681494
Alignment:
| Q |
17 |
atttgttgtcacaacagacatgatagtgttagtgagcagattcattaaagatcctaggcaatcacaccatgtggcagctaaaaggatacctaaagggaaa |
116 |
Q |
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| T |
39681134 |
atttgttgtcacaacagacatgatagtgttagtgagcagattcattaaagatcctaggcaatcacaccatgtggcagccaaaaggatatctaaagggaaa |
39681233 |
T |
|
| Q |
117 |
actagattatgatgttctatatatttcctagcggcagaggaaaaaataatgtggagctactgtggggtatggcgataaatttgaaagtagaaacacaatg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
39681234 |
actagattatgatgttctatatatttcctagcggcagaggaaaaaataatttggagctactatgggatatggcgataaatttgaaagtagaaacacaatg |
39681333 |
T |
|
| Q |
217 |
gggtatatatgttttactaaattcgttggagcactaatctcttgaataatacattgtagtctcacatgttgaataccaagtcttatgtcttcaatctctg |
316 |
Q |
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||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39681334 |
gggtatatatgttttactaaattcgttagagcaataatctcttgaataatacattgcagtctcacatgttgaataccaagtcttatgtcttcaatctctg |
39681433 |
T |
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| Q |
317 |
atgaatgaaatccaactgataagtagagatccgatgcaattgatggtggataacaaatcta |
377 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
39681434 |
atgaatgaaatccaactgagaagtagagatccgatgcaattgatggtggataacaaatcta |
39681494 |
T |
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