View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19317_low_3 (Length: 386)
Name: NF19317_low_3
Description: NF19317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19317_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 2 - 359
Target Start/End: Original strand, 35745118 - 35745469
Alignment:
| Q |
2 |
ttgagtttttgttatgatctctggatatagcctttgtagatcattcagtgttctcataactatctgcaatgtgacatatnnnnnnnnnnnnnnnccaaga |
101 |
Q |
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| T |
35745118 |
ttgagtttttgttatgatctctggatatagcctttgtagatcattcagtgttctcataactatctgcaatgtgacatataaaaaaaaaaaa---ccaaga |
35745214 |
T |
|
| Q |
102 |
ataatgattgtcattttacaacagatcaggaaactgaaatctgtcacttaatgttacgaagttaaactcttattatgtcacatacctcgcgcaaggaagc |
201 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35745215 |
ataatgattgtcattttacaacaga---ggaaactgaaatctgtcacttaatgttacgaagttaaactcttattatgtcacatacctcgcgcaaggaagc |
35745311 |
T |
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| Q |
202 |
agaactgttacatggagctaagtccatgatatctctgaatgccatgatcttcgtatgaatctctaccattaaaatcaattggtctgctcctacgaatgat |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35745312 |
agaactgttacatggagctaagtccatgatatctctgaatgccatgatcttcatatgaatctctaccattaaaatcaattggtctgctcctacgaatgat |
35745411 |
T |
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| Q |
302 |
aactccattgactctccattttctttgctctgagcctttgaagacttcttaggtgtgc |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35745412 |
aactccattgactctccattttctttgctctgagcctttgaagacttcttaggtgtgc |
35745469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 342 - 372
Target Start/End: Original strand, 35745470 - 35745500
Alignment:
| Q |
342 |
aagacttcttaggtgtgctagagccttttat |
372 |
Q |
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| T |
35745470 |
aagacttcttaggtgtgctagagccttttat |
35745500 |
T |
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