View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19317_low_6 (Length: 291)
Name: NF19317_low_6
Description: NF19317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19317_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 6 - 274
Target Start/End: Complemental strand, 332528 - 332260
Alignment:
| Q |
6 |
agaagcataggtgacaggtgtgcaaacctctaaacaaccaacctgcatgctgtgactcttttgcagtacaggagaaggggtcacctgaaagaaatcttag |
105 |
Q |
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| T |
332528 |
agaagaataggtgacaggtgtgcaaacctctaaacaaccaacctgcatgctgtgactcttttgcagtacaggagaaggggtcgcctgaaagaaatcttag |
332429 |
T |
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| Q |
106 |
tattcagttttcaagaaagtagaatgatcggtgaaagttatttcttaccttctccgggtcaacgttctcagatgtaactttaaaacgtcctctctgttga |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
332428 |
tattcagttttcaagaaagtagaatgatcggtgaaagttatttcttaccttctccgggtcaacgttctcagatgtaactttaaaacgtcctctctgttga |
332329 |
T |
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| Q |
206 |
acaactggtacctttgctttatcatcagtgtcatcagaattagctgttatagaaatgattagttagaag |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
332328 |
acaactggtacctttgctttatcatcagtgtcatcagaattagctgttatagaaatgattagttagaag |
332260 |
T |
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