View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19317_low_7 (Length: 250)
Name: NF19317_low_7
Description: NF19317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19317_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 8136247 - 8136047
Alignment:
| Q |
1 |
ccacactcacatgcctctgtgtgcattaaggatgatacatttttcaacattaatacatcatataattggtgggggatannnnnnnnnnnnnnnnccaaat |
100 |
Q |
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| T |
8136247 |
ccacactcacatacctccgcttgcattaaggatgatacatttttcaacattaatacatcatataattggtgggggatttttatttttttttt---caaat |
8136151 |
T |
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| Q |
101 |
gtgattttacatttaggtcaaatggtaaaaggtttggtcttcatcttcatgtagaagtttcactctcaattgtaaaagcagcagtggttcacataacctg |
200 |
Q |
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| T |
8136150 |
gtgattttacatttaggtcaaatggtaaaaggtttggtc-----ctttatgtagaagtttcactctcaattacaaaagcagcagtggttcacataacctg |
8136056 |
T |
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| Q |
201 |
acttgcaaa |
209 |
Q |
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||||||||| |
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| T |
8136055 |
acttgcaaa |
8136047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 208 - 242
Target Start/End: Complemental strand, 8136024 - 8135990
Alignment:
| Q |
208 |
aaagatgaaaaagtagaagtcatgtaagaataatt |
242 |
Q |
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| T |
8136024 |
aaagatgaaaaagtagaagtcatgtaagaataatt |
8135990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 8137223 - 8137292
Alignment:
| Q |
2 |
cacactcacatgcctctgtgtgcattaaggatgatacatttttcaacattaatacatcatataattggtg |
71 |
Q |
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|||| ||||||| |||||| | |||||||| || |||| ||||||| ||||||||||||||||||||| |
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| T |
8137223 |
cacattcacatggctctgtctttattaaggactatgcattgttcaacaataatacatcatataattggtg |
8137292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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