View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19317_low_8 (Length: 238)
Name: NF19317_low_8
Description: NF19317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19317_low_8 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 40286330 - 40286551
Alignment:
| Q |
17 |
aggaactcaagttatggttttactgattctgtattcgaggtgtacctttgagctcaaatttagtaattccttcggttctctattcaccaggtctgcgatc |
116 |
Q |
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| T |
40286330 |
aggaactcaagttatggttttactgattctgtattcgaggtgtacctttgagctcaaatttagtagttccttcggttctctattcaccaggtctgctatc |
40286429 |
T |
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| Q |
117 |
agtatgcttttggtgagggaaatatataagtttctcaagttgaaaagctaaagtgtatattaaggtagctcatggcaagttatatgcttgcaatataaca |
216 |
Q |
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| T |
40286430 |
agtatgcttttggtgagggaaatatataagtttctcaagttgaaaagctaaagtgtatattaaggtagctcatggcaagttatatgcttgcaatacaaca |
40286529 |
T |
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| Q |
217 |
agtcgtgtttccaacgactgtt |
238 |
Q |
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| T |
40286530 |
agtcgtgtttccaacggctgtt |
40286551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 40456430 - 40456209
Alignment:
| Q |
17 |
aggaactcaagttatggttttactgattctgtattcgaggtgtacctttgagctcaaatttagtaattccttcggttctctattcaccaggtctgcgatc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
40456430 |
aggaactcaagttatggttttactgattctgtattcgaggtgtacctttgagctcaaatttagtagttccttcggttctctattcaccaggtctgctatc |
40456331 |
T |
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| Q |
117 |
agtatgcttttggtgagggaaatatataagtttctcaagttgaaaagctaaagtgtatattaaggtagctcatggcaagttatatgcttgcaatataaca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40456330 |
agtatgcttttggtgagggaaatatataagtttctcaagttgaaaagctaaagtgtatattaaggtagctcatggcaagttatatgcttgcaatacaaca |
40456231 |
T |
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| Q |
217 |
agtcgtgtttccaacgactgtt |
238 |
Q |
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| T |
40456230 |
agtcgtgtttccaacggctgtt |
40456209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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