View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19318_high_1 (Length: 464)
Name: NF19318_high_1
Description: NF19318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19318_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 19 - 457
Target Start/End: Original strand, 2377253 - 2377689
Alignment:
| Q |
19 |
aaaacgaactccaatcaaaccttttatcccaaatccctccaaataaactcattaacccttctcaactccaaacttcaatttcatttttgttctcgttaac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2377253 |
aaaacgaactccaatcaaaccttttatcccaaatccctccaaataaactcattaacccttctcaactccaaacttcaatttcatttttgttctcgttaac |
2377352 |
T |
|
| Q |
119 |
ccttctcaacaccaagcaatgctatgcaaatgcaattgcatccctttcaaagaaccaccaaaacctaaaacaatggaatcaaattcaatccatcataatc |
218 |
Q |
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| T |
2377353 |
ccatctcaacaccaaacaatgctatgcaaatgcaattgcatccctttcaaagaaccaccaaaacctaaaacaatggaatcaaattcaatccatcataatc |
2377452 |
T |
|
| Q |
219 |
acttccagtatctatctactcatttcaacacgctatttttcgtcaccaaactcatccaatacccaccactctctcaacctcaaacttcatctcttcacct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2377453 |
acttccagtatctatctactcatttcaacacgctatttttcgtcaccaaactcatccaatgcccaccactctctcaacctcaaacttcatctcttcacct |
2377552 |
T |
|
| Q |
319 |
tctactcaacacaatccacactccaaacactcgcctcttcaacaaactcatcacatctttccctaatacaacacttcattcttatgccaaaatctgtgaa |
418 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2377553 |
tctactcaacacaatccacacttcagacactcgcctcttcaacaaactcatcacatctttccctaatacaacacttcattcttatgccaaaatctgtgaa |
2377652 |
T |
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| Q |
419 |
attggtgttcaaccagataaacacacgttccctttgctt |
457 |
Q |
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| T |
2377653 |
attgatgttcaacc--ataaacacacgttccctttgctt |
2377689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 178; Significance: 8e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 147 - 457
Target Start/End: Original strand, 28198317 - 28198622
Alignment:
| Q |
147 |
aatgcaattgcatccctttcaaagaaccaccaaaacctaaaacaatggaatcaaattcaatccatcataatcacttccagtatctatctactcatttcaa |
246 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| || ||||| ||| || |||| |||| ||| |
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| T |
28198317 |
aatgcaattgcatccctttcaaagaaccatcaaaacctgaaacaatggaatcaaattcaatccacgatcatcacctccggtctctacacactc----caa |
28198412 |
T |
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| Q |
247 |
cacgctatttttcgtcaccaaactcatccaatacccaccactctctcaacctcaaacttcatctcttcaccttctactcaacacaatccacactccaaac |
346 |
Q |
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|||| ||||| |||| ||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||| |
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| T |
28198413 |
gacgccatttt-cgtcgccaaactcatccaatgcgcaccactctctcaacctcaaacttcatctcttcgccttctcctcaacacaatccacactcccaac |
28198511 |
T |
|
| Q |
347 |
actcgcctcttcaacaaactcatcacatctttccctaatacaacacttcattcttatgccaaaatctgtgaaattggtgttcaaccagataaacacacgt |
446 |
Q |
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||||| ||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
28198512 |
actcgtctcttcaacaaactcataacatctttccctaaaacaacacttctttcttatgccaaaatgcatgaaatgggtgttcaaccagataaacacacgt |
28198611 |
T |
|
| Q |
447 |
tccctttgctt |
457 |
Q |
| |
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||||||||||| |
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| T |
28198612 |
tccctttgctt |
28198622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 13325273 - 13325188
Alignment:
| Q |
25 |
aactccaatcaaaccttttatcccaaatccctccaaataaactcattaacccttctcaactcc-aaacttcaatttcatttttgtt |
109 |
Q |
| |
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||||| |||||||| |||||||| ||||||||| ||||||| |||||||| |||||||||| ||| |||||||||||||||||| |
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| T |
13325273 |
aactctaatcaaactttttatccaaaatccctcaaaataaatccattaaccactctcaactccaaaatttcaatttcatttttgtt |
13325188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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