View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19318_high_3 (Length: 343)
Name: NF19318_high_3
Description: NF19318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19318_high_3 |
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| [»] chr5 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 17 - 343
Target Start/End: Original strand, 33116036 - 33116362
Alignment:
| Q |
17 |
gcaattctgagaaagatttacccagcagaagaagttgatgctgaaattcaggctttacaggaatcagttgcaatggaattgaaggaagctgaatcttcag |
116 |
Q |
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| T |
33116036 |
gcaattctgagaaagatttacccagcagaagaagttgatgctgaaattcaggctttataggaatcagttgcaatggaattgaaggaagctgaatcttcag |
33116135 |
T |
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| Q |
117 |
aaaagataagtatgatcacacttttaaaaactacaagtgtgagaagaggtttgtatgcaggaatgggccttcaaatattccaacaatttgtaggaatcaa |
216 |
Q |
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| T |
33116136 |
aaaagataagtatgatcacacttttaaaaactacaagtgtgagaagaggtttgtatgcaggaatgggccttcaaatattccaacaatttgtaggaatcaa |
33116235 |
T |
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| Q |
217 |
taccgtaatgtacttcagcccaactattgttcaactagctggttttgcatctaatcaaaccgcaatgcttctgtctcttatcactgctgggttgaatgcg |
316 |
Q |
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| T |
33116236 |
taccgtaatgtacttcagcccaactattgttcaactagctggttttgcatctaatcaaaccgcaatgcttctgtctcttatcactgctgggttgaatgcg |
33116335 |
T |
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| Q |
317 |
tttggttcgcttataagcatatatttc |
343 |
Q |
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| T |
33116336 |
tttggttctcttataagcatatatttc |
33116362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 33119329 - 33119398
Alignment:
| Q |
161 |
agaggtttgtatgcaggaatgggccttcaaatattccaacaatttgtaggaatcaataccgtaatgtact |
230 |
Q |
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| T |
33119329 |
agaggtttatatgcaggaatgggacttgcaattttccaacaatttgttggaatcaacactgtcatgtact |
33119398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 17 - 343
Target Start/End: Complemental strand, 1084376 - 1084050
Alignment:
| Q |
17 |
gcaattctgagaaagatttacccagcagaagaagttgatgctgaaattcaggctttacaggaatcagttgcaatggaattgaaggaagctgaatcttcag |
116 |
Q |
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| T |
1084376 |
gcaattctgagaaagatttacccagcagaagaagttgatgctgaaattcaggctttacaggaatcagttgcaatggaattgaaggaagctgaatcttcag |
1084277 |
T |
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| Q |
117 |
aaaagataagtatgatcacacttttaaaaactacaagtgtgagaagaggtttgtatgcaggaatgggccttcaaatattccaacaatttgtaggaatcaa |
216 |
Q |
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| T |
1084276 |
aaaagataagtatgatgacacttttaaaaactacaagtgtgagaagaggtttgtatgcaggaatgggccttcaaatattccaacaatttgtaggaatcaa |
1084177 |
T |
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| Q |
217 |
taccgtaatgtacttcagcccaactattgttcaactagctggttttgcatctaatcaaaccgcaatgcttctgtctcttatcactgctgggttgaatgcg |
316 |
Q |
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| T |
1084176 |
tatcgtaatgtacttcagcccaactattgttcaactagctggttttgcatctaatcaaaccgcaatgcttctgtctcttatcactgctgggttgaatacg |
1084077 |
T |
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| Q |
317 |
tttggttcgcttataagcatatatttc |
343 |
Q |
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| T |
1084076 |
tttggttcgcttataagcatatatttc |
1084050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 158 - 339
Target Start/End: Complemental strand, 21559358 - 21559177
Alignment:
| Q |
158 |
agaagaggtttgtatgcaggaatgggccttcaaatattccaacaatttgtaggaatcaataccgtaatgtacttcagcccaactattgttcaactagctg |
257 |
Q |
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| T |
21559358 |
agaagaggtttatatgcaggagtgggactacaaatcttccaacaatttgtcggaatcaacacagtaatgtactacagtccaaccatcgttcaactagctg |
21559259 |
T |
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| Q |
258 |
gttttgcatctaatcaaaccgcaatgcttctgtctcttatcactgctgggttgaatgcgtttggttcgcttataagcatata |
339 |
Q |
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|||||||||| || |||| ||| | |||||||| || |||| ||||| | ||||| ||||||||| || | |||||||| |
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| T |
21559258 |
gttttgcatcaaacaaaacagcacttcttctgtcgctcgtcacagctggaattaatgcatttggttcgattttgagcatata |
21559177 |
T |
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