View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19318_high_5 (Length: 340)

Name: NF19318_high_5
Description: NF19318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19318_high_5
NF19318_high_5
[»] chr4 (27 HSPs)
chr4 (140-340)||(5707320-5707520)
chr4 (140-340)||(5713948-5714148)
chr4 (140-340)||(19926767-19926967)
chr4 (140-340)||(26970463-26970663)
chr4 (140-340)||(55612683-55612883)
chr4 (140-340)||(868597-868797)
chr4 (140-340)||(26963640-26963840)
chr4 (140-340)||(10621340-10621540)
chr4 (140-340)||(10628419-10628619)
chr4 (142-340)||(18262214-18262412)
chr4 (142-340)||(28393141-28393339)
chr4 (142-340)||(4426611-4426808)
chr4 (142-340)||(18269070-18269273)
chr4 (152-338)||(8845215-8845401)
chr4 (152-338)||(8858179-8858365)
chr4 (140-255)||(12357136-12357251)
chr4 (148-339)||(20311299-20311491)
chr4 (146-332)||(5668140-5668327)
chr4 (146-340)||(10677562-10677753)
chr4 (146-340)||(10891202-10891393)
chr4 (142-339)||(5616215-5616414)
chr4 (146-340)||(35223576-35223760)
chr4 (166-332)||(21454152-21454319)
chr4 (277-329)||(39074218-39074270)
chr4 (189-256)||(39074278-39074346)
chr4 (208-339)||(56516124-56516255)
chr4 (14-45)||(10293748-10293779)
[»] scaffold0234 (2 HSPs)
scaffold0234 (140-340)||(2328-2528)
scaffold0234 (140-340)||(11219-11419)
[»] chr6 (18 HSPs)
chr6 (140-340)||(29308890-29309090)
chr6 (140-340)||(29315850-29316050)
chr6 (142-340)||(16566327-16566525)
chr6 (140-340)||(27381259-27381459)
chr6 (140-340)||(27471642-27471842)
chr6 (142-340)||(17684476-17684674)
chr6 (140-340)||(17691447-17691647)
chr6 (142-340)||(188984-189182)
chr6 (142-340)||(11651725-11651923)
chr6 (142-340)||(25537166-25537364)
chr6 (142-330)||(13359286-13359474)
chr6 (159-332)||(8509941-8510115)
chr6 (179-340)||(20553594-20553755)
chr6 (178-340)||(17850502-17850663)
chr6 (163-332)||(27925772-27925946)
chr6 (147-202)||(31258065-31258120)
chr6 (156-221)||(22259925-22259990)
chr6 (14-48)||(22288986-22289020)
[»] chr1 (17 HSPs)
chr1 (140-340)||(18252030-18252230)
chr1 (140-340)||(18532521-18532721)
chr1 (140-340)||(27131416-27131616)
chr1 (142-340)||(21171240-21171438)
chr1 (142-340)||(27310584-27310782)
chr1 (142-340)||(16359042-16359240)
chr1 (146-332)||(36816648-36816834)
chr1 (140-340)||(3855926-3856126)
chr1 (140-332)||(22657236-22657429)
chr1 (146-340)||(27277564-27277756)
chr1 (174-332)||(12006554-12006712)
chr1 (174-339)||(12014292-12014457)
chr1 (152-338)||(9917927-9918106)
chr1 (146-215)||(30720625-30720694)
chr1 (170-247)||(3403248-3403325)
chr1 (170-247)||(3443494-3443571)
chr1 (46-74)||(27131678-27131706)
[»] chr3 (30 HSPs)
chr3 (143-340)||(13211305-13211502)
chr3 (140-340)||(6110064-6110264)
chr3 (140-340)||(10572599-10572799)
chr3 (142-340)||(16482490-16482688)
chr3 (146-340)||(17781125-17781319)
chr3 (140-340)||(15600891-15601091)
chr3 (140-340)||(15607436-15607636)
chr3 (146-340)||(10579362-10579556)
chr3 (142-340)||(18522665-18522863)
chr3 (140-340)||(13248607-13248807)
chr3 (140-340)||(15357593-15357793)
chr3 (142-340)||(18519980-18520175)
chr3 (140-326)||(8490488-8490674)
chr3 (146-340)||(19089752-19089946)
chr3 (142-340)||(17200191-17200389)
chr3 (140-301)||(18640792-18640953)
chr3 (159-340)||(15342226-15342407)
chr3 (142-340)||(13516813-13517011)
chr3 (146-340)||(32056907-32057101)
chr3 (146-332)||(1647536-1647726)
chr3 (140-332)||(29924971-29925163)
chr3 (140-332)||(29974124-29974316)
chr3 (142-328)||(16200128-16200313)
chr3 (142-328)||(16200434-16200619)
chr3 (147-340)||(24253395-24253589)
chr3 (246-340)||(17136465-17136559)
chr3 (142-204)||(18534758-18534820)
chr3 (142-187)||(18510924-18510969)
chr3 (46-74)||(8490394-8490422)
chr3 (46-74)||(10579627-10579655)
[»] scaffold0220 (1 HSPs)
scaffold0220 (140-340)||(18288-18488)
[»] chr7 (16 HSPs)
chr7 (140-340)||(29327784-29327984)
chr7 (140-340)||(11536069-11536269)
chr7 (140-340)||(11542987-11543187)
chr7 (142-340)||(15152445-15152643)
chr7 (142-340)||(15148144-15148342)
chr7 (142-340)||(18561009-18561207)
chr7 (142-332)||(12750828-12751018)
chr7 (146-340)||(12738542-12738736)
chr7 (142-332)||(18257857-18258047)
chr7 (146-328)||(13392157-13392338)
chr7 (162-332)||(2364917-2365086)
chr7 (173-332)||(7396221-7396381)
chr7 (146-330)||(39111819-39112002)
chr7 (214-257)||(3132748-3132791)
chr7 (190-255)||(10234179-10234244)
chr7 (140-172)||(2653207-2653239)
[»] scaffold0390 (3 HSPs)
scaffold0390 (140-340)||(6941-7141)
scaffold0390 (140-340)||(13957-14157)
scaffold0390 (46-74)||(14223-14251)
[»] chr8 (11 HSPs)
chr8 (140-340)||(21940665-21940865)
chr8 (142-340)||(22171491-22171687)
chr8 (146-340)||(24642655-24642849)
chr8 (142-340)||(28554885-28555083)
chr8 (146-339)||(6094129-6094322)
chr8 (146-273)||(24636860-24636987)
chr8 (152-340)||(38232384-38232570)
chr8 (161-315)||(2375027-2375179)
chr8 (170-331)||(32872857-32873019)
chr8 (178-241)||(10920234-10920297)
chr8 (46-74)||(21940571-21940599)
[»] chr5 (13 HSPs)
chr5 (140-340)||(24695473-24695673)
chr5 (140-340)||(18569870-18570070)
chr5 (142-340)||(19714505-19714703)
chr5 (146-340)||(19707225-19707419)
chr5 (145-328)||(27347497-27347679)
chr5 (146-332)||(22547031-22547217)
chr5 (140-249)||(39537962-39538071)
chr5 (144-325)||(17285754-17285935)
chr5 (146-249)||(31886537-31886640)
chr5 (205-340)||(18807041-18807176)
chr5 (144-325)||(17298907-17299088)
chr5 (253-340)||(39538701-39538788)
chr5 (166-256)||(33477389-33477479)
[»] chr2 (7 HSPs)
chr2 (140-336)||(21330259-21330455)
chr2 (140-340)||(18796506-18796706)
chr2 (142-338)||(18619807-18620002)
chr2 (146-285)||(19692598-19692737)
chr2 (206-332)||(20977958-20978084)
chr2 (174-340)||(36270199-36270366)
chr2 (174-332)||(18822115-18822275)
[»] scaffold0433 (1 HSPs)
scaffold0433 (140-340)||(7107-7307)
[»] scaffold0186 (1 HSPs)
scaffold0186 (140-340)||(25997-26197)
[»] scaffold0657 (1 HSPs)
scaffold0657 (140-340)||(993-1193)
[»] scaffold0063 (1 HSPs)
scaffold0063 (142-340)||(5531-5729)
[»] scaffold0008 (1 HSPs)
scaffold0008 (142-323)||(230365-230545)
[»] scaffold0176 (1 HSPs)
scaffold0176 (140-204)||(8446-8510)
[»] scaffold0565 (1 HSPs)
scaffold0565 (159-190)||(10127-10158)
[»] scaffold0497 (1 HSPs)
scaffold0497 (14-48)||(4149-4183)
[»] scaffold0326 (1 HSPs)
scaffold0326 (140-173)||(16615-16648)
[»] scaffold0032 (1 HSPs)
scaffold0032 (169-241)||(92194-92267)
[»] scaffold0767 (1 HSPs)
scaffold0767 (46-74)||(11-39)


Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 140 - 340
Target Start/End: Original strand, 5707320 - 5707520
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5707320 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 5707419  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5707420 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 5707519  T
Q  340 c 340  Q
    |    
T  5707520 c 5707520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 140 - 340
Target Start/End: Original strand, 5713948 - 5714148
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5713948 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagcccatttaatggaacattaagtataacttaattgtgag 5714047  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5714048 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 5714147  T
Q  340 c 340  Q
    |    
T  5714148 c 5714148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 140 - 340
Target Start/End: Complemental strand, 19926967 - 19926767
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  19926967 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 19926868  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  19926867 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 19926768  T
Q  340 c 340  Q
    |    
T  19926767 c 19926767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 140 - 340
Target Start/End: Original strand, 26970463 - 26970663
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26970463 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 26970562  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26970563 accccattaaacataaggaaactattctcaaagtatccgtagtcaagatttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 26970662  T
Q  340 c 340  Q
    |    
T  26970663 c 26970663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 140 - 340
Target Start/End: Original strand, 55612683 - 55612883
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  55612683 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 55612782  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  55612783 accccattaaacataaggaaactactctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 55612882  T
Q  340 c 340  Q
    |    
T  55612883 c 55612883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 140 - 340
Target Start/End: Original strand, 868597 - 868797
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  868597 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 868696  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  868697 accccgttaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtaggtaga 868796  T
Q  340 c 340  Q
    |    
T  868797 c 868797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 140 - 340
Target Start/End: Original strand, 26963640 - 26963840
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  26963640 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaaatataacttaattgtgag 26963739  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26963740 accccattaaacataaggaaactattctcaaagtatccgtagtcaagatttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 26963839  T
Q  340 c 340  Q
    |    
T  26963840 c 26963840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 140 - 340
Target Start/End: Complemental strand, 10621540 - 10621340
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10621540 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctggaatagttagtccgtttaatggaacattaagtataacttaattgtgag 10621441  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10621440 agcccattaaacataaggaaactattctcaaagtatctgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 10621341  T
Q  340 c 340  Q
    |    
T  10621340 c 10621340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 140 - 340
Target Start/End: Complemental strand, 10628619 - 10628419
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10628619 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctggaatagttagtccgtttaatggaacattaagtataacttaattgtgag 10628520  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  10628519 agcccattaaacataaggaaactattctcaaagtatctgtagtcaagctttattgagaagtgggatattattaaagcatagagactattatgtaggtaga 10628420  T
Q  340 c 340  Q
    |    
T  10628419 c 10628419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 142 - 340
Target Start/End: Original strand, 18262214 - 18262412
Alignment:
Q  142 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 241  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18262214 aaggcatttctttattgattttgtttcgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 18262313  T
Q  242 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18262314 cccgttaaacataaggaaactattctcaaagtatccgtagtcaagctttgatgagaagtgggatatcattaaagcatagagactattatgtaggtagac 18262412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 142 - 340
Target Start/End: Complemental strand, 28393339 - 28393141
Alignment:
Q  142 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 241  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28393339 aaggcatttctttattgattttgatttgtttcaaaataataaagtccctaaaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 28393240  T
Q  242 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  28393239 cccattaaacataaggaaactattcttaaagtatctgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtgggtagac 28393141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 142 - 340
Target Start/End: Complemental strand, 4426808 - 4426611
Alignment:
Q  142 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4426808 aaggcatttctttattgattttgttttgtttcaaaataataaagtccttagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 4426709  T
Q  242 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    ||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  4426708 cccgttaaacataagg-aactattcttaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtgggtagac 4426611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 142 - 340
Target Start/End: Original strand, 18269070 - 18269273
Alignment:
Q  142 aaggcatttctttattgatttt-----gttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgt 236  Q
    ||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18269070 aaggcatttctttattgattttgttttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgt 18269169  T
Q  237 gagaccccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggt 336  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||    
T  18269170 gagaccccgttaaacataaggaaactattctcaaagtatccgtagtcaagctttgatgagaagtgggatatcattaaagcatagagactattatgtaggt 18269269  T
Q  337 agac 340  Q
    ||||    
T  18269270 agac 18269273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 152 - 338
Target Start/End: Original strand, 8845215 - 8845401
Alignment:
Q  152 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagaccccattaaac 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||    
T  8845215 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagatcccgttaaac 8845314  T
Q  252 ataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtag 338  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||    
T  8845315 ataaggaaactattcttaaagtatccgtagtcaagctttattgagaagtcggatatcattaaagcatagagactattatgtgggtag 8845401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 152 - 338
Target Start/End: Original strand, 8858179 - 8858365
Alignment:
Q  152 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagaccccattaaac 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||    
T  8858179 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagatcccgttaaac 8858278  T
Q  252 ataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtag 338  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||    
T  8858279 ataaggaaactattcttaaagtatccgtagtcaagctttattgagaagtcggatatcattaaagcatagagactattatgtgggtag 8858365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 140 - 255
Target Start/End: Original strand, 12357136 - 12357251
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12357136 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 12357235  T
Q  240 accccattaaacataa 255  Q
    ||||||||||||||||    
T  12357236 accccattaaacataa 12357251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 148 - 339
Target Start/End: Original strand, 20311299 - 20311491
Alignment:
Q  148 tttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaag-tataacttaattgtgagaccccat 246  Q
    ||||||||||||||||||||||||| ||||||||||||| | || |||||||| |   || |||||| ||||||| ||||||||||||||||||||||||    
T  20311299 tttctttattgattttgttttgttttaaaataataaagtacttataatagttaatatgttcaatggagcattaaggtataacttaattgtgagaccccat 20311398  T
Q  247 taaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    |||||||||||| ||| || | |||||||  || |||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||    
T  20311399 taaacataaggacactgtttttaaagtatttgttgtcaagctttattgtgaagtgagatatcattaaagcatagagactattttgtgggtaga 20311491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 146 - 332
Target Start/End: Complemental strand, 5668327 - 5668140
Alignment:
Q  146 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 245  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||| |||||||| | | ||||| |||||| ||||    
T  5668327 catttctttgttgattttgttttgtttcaaaataataaagtctctagaataattagtctatttaatggagcattaagtgtgatttaatcgtgaga-ccca 5668229  T
Q  246 ttaaacataaggaaactattctcaaag--tatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgt 332  Q
    |||||   ||||| | |||||| ||||  |||  ||||||||||||||||| |||  |||||| ||||||| |||||||||||||||||    
T  5668228 ttaaatgaaaggacattattcttaaagtatatttgtagtcaagctttattgtgaaaagagataacattaaatcatagagactattatgt 5668140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 146 - 340
Target Start/End: Complemental strand, 10677753 - 10677562
Alignment:
Q  146 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 245  Q
    ||||| |||||||||||| ||||||||||| | ||||||| ||||| |||| ||||||  | ||||||| |||||||||| ||||||| | |||| ||||    
T  10677753 catttttttattgattttcttttgtttcaataaaataaagcccctaaaataattagtctgtataatggagcattaagtatgacttaatcgcgaga-ccca 10677655  T
Q  246 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    ||||||  || || | |||||| |||||||||||||||||||||||  | ||| ||||||| |||||||| ||| |||||||||||| |||||||    
T  10677654 ttaaacgaaatgatattattcttaaagtatccgtagtcaagcttta--gtgaaatgagataacattaaagtatatagactattatgtgggtagac 10677562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 146 - 340
Target Start/End: Complemental strand, 10891393 - 10891202
Alignment:
Q  146 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 245  Q
    ||||| |||||||||||| ||||||||||| | ||||||| ||||| |||| ||||||  | ||||||| |||||||||| ||||||| | |||| ||||    
T  10891393 catttttttattgattttcttttgtttcaataaaataaagcccctaaaataattagtctgtataatggagcattaagtatgacttaatcgcgaga-ccca 10891295  T
Q  246 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    ||||||  || || | |||||| |||||||||||||||||||||||  | ||| ||||||| |||||||| ||| |||||||||||| |||||||    
T  10891294 ttaaacgaaatgatattattcttaaagtatccgtagtcaagcttta--gtgaaatgagataacattaaagtatatagactattatgtgggtagac 10891202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 142 - 339
Target Start/End: Original strand, 5616215 - 5616414
Alignment:
Q  142 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 241  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||| |||| |||||| ||||  ||||||||||||| | ||| |||  |||||     
T  5616215 aaggcatttctttattcattttgttttgtttcaaaataataaagttcctaaaataattagtctatttcttggaacattaagtctgactaaatcatgagat 5616314  T
Q  242 cccattaaacataaggaaactattctcaaagtatccgtagtcaa--gctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    ||| ||||||   |||| | |||||| ||||||||||| |||||  | ||||||  ||| || ||||| | |||||||| |||||||||||||| |||||    
T  5616315 cccgttaaactagaggacattattcttaaagtatccgttgtcaaaggttttattatgaattgggatattaataaagcattgagactattatgtatgtaga 5616414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 146 - 340
Target Start/End: Original strand, 35223576 - 35223760
Alignment:
Q  146 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 245  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||  ||||||||| |||||||| | |||||||          |     
T  35223576 catttctttgttgattttgttttgttttaaaataataaagtccctagaataattagtctgtttaatggagcattaagtgtgacttaat----------cg 35223665  T
Q  246 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    | ||||  ||||| | |||||| ||||||| ||||||||||||||||||  ||    |||| |||||||||||| |||||||||||| |||||||    
T  35223666 taaaacgaaaggacattattcttaaagtattcgtagtcaagctttattgtaaaaaaggataacattaaagcatatagactattatgtgggtagac 35223760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 332
Target Start/End: Complemental strand, 21454319 - 21454152
Alignment:
Q  166 tttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaag-tataacttaattgtgagaccccattaaacataaggaaactat 264  Q
    ||||||||||| ||||||||| | |||||||||||||    |||||||||||||||  | | |||||||  ||||||||||||||  |||| || | |||    
T  21454319 tttgtttcaaagtaataaagttcttagaatagttagtttgattaatggaacattaaaatgtgacttaatattgagaccccattaattataatgacattat 21454220  T
Q  265 tctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgt 332  Q
    | | ||| ||||  ||||||| |||||||| ||| ||||||| || ||| ||||| ||| ||||||||    
T  21454219 ttttaaaatatctatagtcaaactttattgtgaaatgagataacaataatgcataaagattattatgt 21454152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 277 - 329
Target Start/End: Complemental strand, 39074270 - 39074218
Alignment:
Q  277 cgtagtcaagctttattgagaagtgagatatcattaaagcatagagactatta 329  Q
    ||||||||  |||||||| ||||||||||||||||||||||| ||||||||||    
T  39074270 cgtagtcatactttattgtgaagtgagatatcattaaagcatggagactatta 39074218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 39074346 - 39074278
Alignment:
Q  189 ctagaatagttagtccatttaa-tggaacattaagtataacttaattgtgagaccccattaaacataag 256  Q
    |||||||| ||||||| ||||| | ||||||||||||| |||||||  |||||||||||||||||||||    
T  39074346 ctagaataattagtccgtttaaattgaacattaagtatgacttaatcatgagaccccattaaacataag 39074278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 339
Target Start/End: Original strand, 56516124 - 56516255
Alignment:
Q  208 taatggaacattaagtataacttaattgtgagaccccattaaacataaggaa-actattctcaaagtatccgtagtcaagctttattgagaagtgagata 306  Q
    ||||| |||||||| | | |||||||||||||||  |||||| ||||  ||| | ||||||  |||||||  |||||||||||||||| |||    ||||    
T  56516124 taatgaaacattaattgtgacttaattgtgagacttcattaa-catatagaacattattcttgaagtatctatagtcaagctttattgtgaataacgata 56516222  T
Q  307 tcattaaagcatagagactattatgtaggtaga 339  Q
      |||||| ||||||||||||||||||||||||    
T  56516223 gtattaaaacatagagactattatgtaggtaga 56516255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 45
Target Start/End: Complemental strand, 10293779 - 10293748
Alignment:
Q  14 ctgttgccaagagcaggaagacaaatagcaaa 45  Q
    ||||||||||||||||||||||||||||||||    
T  10293779 ctgttgccaagagcaggaagacaaatagcaaa 10293748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 140 - 340
Target Start/End: Complemental strand, 2528 - 2328
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2528 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 2429  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2428 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 2329  T
Q  340 c 340  Q
    |    
T  2328 c 2328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 140 - 340
Target Start/End: Complemental strand, 11419 - 11219
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11419 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 11320  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11319 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 11220  T
Q  340 c 340  Q
    |    
T  11219 c 11219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 140 - 340
Target Start/End: Original strand, 29308890 - 29309090
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29308890 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 29308989  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29308990 agcccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 29309089  T
Q  340 c 340  Q
    |    
T  29309090 c 29309090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 140 - 340
Target Start/End: Original strand, 29315850 - 29316050
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29315850 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 29315949  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29315950 agcccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 29316049  T
Q  340 c 340  Q
    |    
T  29316050 c 29316050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 142 - 340
Target Start/End: Complemental strand, 16566525 - 16566327
Alignment:
Q  142 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16566525 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 16566426  T
Q  242 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16566425 cccgttaaacataaggaaactattcttaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagac 16566327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 140 - 340
Target Start/End: Complemental strand, 27381459 - 27381259
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27381459 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 27381360  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  27381359 accccattaaacatatggaaactattctcaaagtatccatagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtaggtaga 27381260  T
Q  340 c 340  Q
    |    
T  27381259 c 27381259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 140 - 340
Target Start/End: Complemental strand, 27471842 - 27471642
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27471842 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 27471743  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  27471742 accccattaaacatatggaaactattctcaaagtatccatagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtaggtaga 27471643  T
Q  340 c 340  Q
    |    
T  27471642 c 27471642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 142 - 340
Target Start/End: Complemental strand, 17684674 - 17684476
Alignment:
Q  142 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17684674 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 17684575  T
Q  242 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  17684574 cccgttaaacataaggaaactattctcaaagtatccgtagtcaagctttgatgagaagtgggatatcattaaagcatagagactattatgtaggtagac 17684476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 140 - 340
Target Start/End: Complemental strand, 17691647 - 17691447
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17691647 acaaggcatttctttattgattttgttttctttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 17691548  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||    
T  17691547 accccattaaacataaggaaactattcttaaagtatccgtagtcaagctttagtgagaagtgggatatcattaaagcataaagactattatgtaggtaga 17691448  T
Q  340 c 340  Q
    |    
T  17691447 c 17691447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 142 - 340
Target Start/End: Complemental strand, 189182 - 188984
Alignment:
Q  142 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  189182 aaggcatttctttattgattttgttttgtttcaaaataataaagtccttagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 189083  T
Q  242 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    |||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  189082 cccattaaacataaggaaactattcttaaagtatttgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtgggtagac 188984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 142 - 340
Target Start/End: Original strand, 11651725 - 11651923
Alignment:
Q  142 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 241  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11651725 aaggcatttctttattgattttgatttgtttcaaaataataaagtccctaaaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 11651824  T
Q  242 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    ||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11651825 cccattaaaaataaggaaactattctaaaagtatcagtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtgggtagac 11651923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 142 - 340
Target Start/End: Complemental strand, 25537364 - 25537166
Alignment:
Q  142 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||    
T  25537364 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaataattagtccgtttaatggaacattaagtataactttattgtgagac 25537265  T
Q  242 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    ||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  25537264 cccgttaaacataaggaaactattcttaaagtattcgtagtcaagctttattgagaagtgggatatcattaaagcataaagactattatgtaggtagac 25537166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 142 - 330
Target Start/End: Complemental strand, 13359474 - 13359286
Alignment:
Q  142 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 241  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |  |||||||| |||||||||||||||||| |||| ||    
T  13359474 aaggcatttatttatttattttgttttgtttcaaaataataaagtccctagaatagttagttcgcttaatggagcattaagtataacttaatcgtgaaac 13359375  T
Q  242 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattat 330  Q
     |||||||||||||  | | |||| | ||||||||||||||||| |||||||| ||| || || | ||||||||| |||||||||||||    
T  13359374 tccattaaacataaaaacattatttttaaagtatccgtagtcaacctttattgtgaaatgggacaacattaaagcgtagagactattat 13359286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 159 - 332
Target Start/End: Original strand, 8509941 - 8510115
Alignment:
Q  159 attttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgaga-ccccattaaacataagg 257  Q
    ||||| |||||||| ||||||||||||||  ||||||| |||||| |||| ||||||||||| |||  |||||||| ||||| |||||||||| || |||    
T  8509941 attttattttgttttaaaataataaagtctatagaataattagtctatttgatggaacattatgtacgacttaattatgagacccccattaaatatgagg 8510040  T
Q  258 aaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgt 332  Q
    |   |||| | |||||||  ||||| ||||||||||  ||| ||||||| ||||||| |||| ||||||||||||    
T  8510041 atgatattattaaagtatatgtagttaagctttattatgaaatgagatagcattaaaacataaagactattatgt 8510115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 179 - 340
Target Start/End: Complemental strand, 20553755 - 20553594
Alignment:
Q  179 aataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagaccccattaaacataaggaaactattctcaaagtatccg 278  Q
    ||||||||| |||| |||| |||||| ||||||| || ||||||||  ||||||| |||||| ||||||||| ||||| | | |||||| |||| |||||    
T  20553755 aataaagtctctaggatagctagtccgtttaatgaaatattaagtacgacttaatcgtgagatcccattaaatataagaatattattcttaaagcatccg 20553656  T
Q  279 tagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    |||| ||  ||||||| |||||||||||  ||||||||||| ||| | |||||| |||||||    
T  20553655 tagtgaatttttattgtgaagtgagataaaattaaagcataaagatttttatgttggtagac 20553594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 340
Target Start/End: Complemental strand, 17850663 - 17850502
Alignment:
Q  178 taataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagaccccattaaacataaggaaactattctcaaagtatcc 277  Q
    |||||||||||||| ||||| ||||   |||  |||||||||| |||  |||||||||||| | || |||||| | ||||| |||||||| ||| |||||    
T  17850663 taataaagtccctataatagctagtttgtttgttggaacattatgtaagacttaattgtgatatccaattaaaaacaaggacactattcttaaattatcc 17850564  T
Q  278 gtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
     |||||||||||| ||| ||||| | ||| |||| ||| ||| |||||||||| | |||||||    
T  17850563 atagtcaagcttt-ttgtgaagtcaaataacattcaagtatatagactattatatgggtagac 17850502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 163 - 332
Target Start/End: Original strand, 27925772 - 27925946
Alignment:
Q  163 tgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacat---taagtata--acttaattgtgagaccccattaaacataagg 257  Q
    |||||||||||||||||||||||||| |||||||  ||||   ||||| |||||||   ||||| |   ||||||| ||||||| |||||||||  |||     
T  27925772 tgttttgtttcaaaataataaagtccttagaataactagtatgtttaacggaacataattaagtgtgtgacttaatcgtgagactccattaaactaaaga 27925871  T
Q  258 aaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgt 332  Q
    ||| |||||| ||||||||  ||||||| |||||||  ||||||  ||| |||| ||||| | ||||||||||||    
T  27925872 aaattattcttaaagtatctctagtcaaactttatttggaagtggtatagcattgaagcacaaagactattatgt 27925946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 31258120 - 31258065
Alignment:
Q  147 atttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagt 202  Q
    |||||||||||| |||||||||||||||||||||||||||| ||| |||| |||||    
T  31258120 atttctttattgcttttgttttgtttcaaaataataaagtctctaaaataattagt 31258065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 22259990 - 22259925
Alignment:
Q  156 ttgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaa 221  Q
    ||||||||||| |||| |||||||||||| |||||| ||||  |||||||||||||  ||||||||    
T  22259990 ttgattttgttatgttgcaaaataataaactccctaaaataactagtccatttaatataacattaa 22259925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 22289020 - 22288986
Alignment:
Q  14 ctgttgccaagagcaggaagacaaatagcaaaact 48  Q
    ||||||||||||||||||||||||| |||||||||    
T  22289020 ctgttgccaagagcaggaagacaaagagcaaaact 22288986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 140 - 340
Target Start/End: Original strand, 18252030 - 18252230
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18252030 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 18252129  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18252130 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 18252229  T
Q  340 c 340  Q
    |    
T  18252230 c 18252230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 140 - 340
Target Start/End: Complemental strand, 18532721 - 18532521
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  18532721 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagttcgtttaatggaacattaagtataacttaattgtgag 18532622  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||    
T  18532621 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtagataga 18532522  T
Q  340 c 340  Q
    |    
T  18532521 c 18532521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 140 - 340
Target Start/End: Complemental strand, 27131616 - 27131416
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27131616 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 27131517  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  27131516 accccattaaacataaggaaactattctcaaagtatttgtagtcaagctttattgagaagtgggatatcattaaagcataaagactattatgtaggtaga 27131417  T
Q  340 c 340  Q
    |    
T  27131416 c 27131416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 142 - 340
Target Start/End: Complemental strand, 21171438 - 21171240
Alignment:
Q  142 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||| |||||||||||||||||||    
T  21171438 aaggcatttctttattgattttgttttgtttcaaaataataaagtccttagaatagttagtccgtttcatggaacattaaatataacttaattgtgagac 21171339  T
Q  242 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    ||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||    
T  21171338 cccgttgaacataaggaaactattcttaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcataaagactattatgtgggtagac 21171240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 142 - 340
Target Start/End: Complemental strand, 27310782 - 27310584
Alignment:
Q  142 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27310782 aaggcatttctttattgattttgttttgtttcaaaataataaagtccttagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 27310683  T
Q  242 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    | | || ||||||||||||||||||| |||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||    
T  27310682 cacgttgaacataaggaaactattcttaaagtatcagtagtcaagctttattgagaagtggaatatcattaaagcatagagactattatgtgggtagac 27310584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 142 - 340
Target Start/End: Complemental strand, 16359240 - 16359042
Alignment:
Q  142 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||    
T  16359240 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagaataacttaattgtgagac 16359141  T
Q  242 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    ||| |||||||||||||||||||||| |||||| || |||||||||||||||||||| ||  ||||||||||||||||||||||||||||| |||||||    
T  16359140 cccgttaaacataaggaaactattcttaaagtaaccctagtcaagctttattgagaaatggaatatcattaaagcatagagactattatgtgggtagac 16359042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 146 - 332
Target Start/End: Complemental strand, 36816834 - 36816648
Alignment:
Q  146 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 245  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||  |||||||||||||||||||||| ||||||||||||| ||     
T  36816834 catttctttattgattttgttttgtttcaaaataatgaagtccctagaatagttcgtctgtttaatggaacattaagtataaattaattgtgagactccg 36816735  T
Q  246 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgt 332  Q
    ||||||||||||| | |||||| ||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  36816734 ttaaacataaggacattattcttaaagtatccatagtcaagctttattgagaagtgggataccattaaagcatagagactattatgt 36816648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 140 - 340
Target Start/End: Complemental strand, 3856126 - 3855926
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  3856126 acaaggcatttctttgtttattttgttttgtttcaaaataacaaagtccctagaatagttagcccgtttaatggaacattaagtataacttaattgtgag 3856027  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    ||||||||||||||||||| | |||||| ||| |||  |||||||| |||||||| |||||| ||||| |||||||||| |||||||||| || ||||||    
T  3856026 accccattaaacataaggacattattcttaaaatatttgtagtcaaactttattgtgaagtgggatattattaaagcatggagactattacgtgggtaga 3855927  T
Q  340 c 340  Q
    |    
T  3855926 c 3855926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 140 - 332
Target Start/End: Complemental strand, 22657429 - 22657236
Alignment:
Q  140 acaaggcatttctttattgatttt-gttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtga 238  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||| ||||||||||||||||    
T  22657429 acaagacatttctttattgatttttgttttgtttcaaaataataaagttcctagaatagttagtctgtttaatggaacattaaatataacttaattgtga 22657330  T
Q  239 gaccccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgt 332  Q
    |||||| ||||||||||||| || ||||| ||||| ||  |||||||||||||||  ||| |||||||||||||||||||||||||||| ||||    
T  22657329 gacccctttaaacataaggacacaattcttaaagtgtctctagtcaagctttattctgaaatgagatatcattaaagcatagagactatcatgt 22657236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 146 - 340
Target Start/End: Complemental strand, 27277756 - 27277564
Alignment:
Q  146 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 245  Q
    ||||||||| ||| |||||||||||||||||||||||| |||||||||||| ||||||||||||| ||| |||| ||| | ||||||| | |||| ||      
T  27277756 catttctttgttgtttttgttttgtttcaaaataataacgtccctagaataattagtccatttaacggagcatt-agtgtgacttaatcgcgaga-cctt 27277659  T
Q  246 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    |||| |  || || | |||||| |||||||||||||||| ||||||||| |||  | |||| ||||||||||||||||||||||||| |||||||    
T  27277658 ttaaccgaaatgacattattcttaaagtatccgtagtcaggctttattgtgaaaagggataacattaaagcatagagactattatgtgggtagac 27277564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 174 - 332
Target Start/End: Complemental strand, 12006712 - 12006554
Alignment:
Q  174 aaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagaccccattaaacataaggaaactattctcaaagt 273  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||| |  |||||| |||||||||||| ||||||||||| | |||| | |||      
T  12006712 aaaataataaagtccctagaatagttagtctatttaatggaatattaagtgtgccttaatcgtgagaccccatgaaacataaggacattattattaaaac 12006613  T
Q  274 atccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgt 332  Q
    || ||||||||||| ||| || |||| | |||| ||||||| | |||||| | ||||||    
T  12006612 attcgtagtcaagccttagtgtgaagagggataacattaaaacttagagattgttatgt 12006554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 174 - 339
Target Start/End: Complemental strand, 12014457 - 12014292
Alignment:
Q  174 aaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagaccccattaaacataaggaaactattctcaaagt 273  Q
    |||||||||||||| ||||||||  |||||| |||||||||| ||||||| ||| ||||| || ||| |||||||||||||| ||   |||||| |||      
T  12014457 aaaataataaagtcactagaatacatagtccgtttaatggaatattaagtgtaaattaatcgttagatcccattaaacataatgatgttattcttaaaac 12014358  T
Q  274 atccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    ||||||||| |||||||| || |||| | ||||  |||||||| || |||| ||||||| ||||||    
T  12014357 atccgtagttaagctttagtgtgaagagggatacgattaaagcgtaaagaccattatgtgggtaga 12014292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 338
Target Start/End: Complemental strand, 9918106 - 9917927
Alignment:
Q  152 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagaccccattaaac 251  Q
    |||||||||||||||||||| ||||||||||||||| ||       |||||   |||||| |||||||||||||||||| ||   ||||  ||||||||     
T  9918106 tttattgattttgttttgttacaaaataataaagtcactt------ttagtttgtttaatcgaacattaagtataacttgatcacgaga-tccattaaat 9918014  T
Q  252 ataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtag 338  Q
    ||||||| | |||||| ||| ||||  |||| |||||||||||  ||||| |||| |||| ||||||||||| || ||||| |||||    
T  9918013 ataaggacattattcttaaaatatctatagttaagctttattgttaagtgggatagcattgaagcatagagaatactatgtcggtag 9917927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 30720694 - 30720625
Alignment:
Q  146 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaa 215  Q
    ||||| ||||||| |||| |||||||| ||||||||||||| ||| ||||| ||||| | ||||||||||    
T  30720694 catttttttattggttttattttgttttaaaataataaagttcctggaataattagttcgtttaatggaa 30720625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 247
Target Start/End: Original strand, 3403248 - 3403325
Alignment:
Q  170 tttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagaccccatt 247  Q
    ||||||| ||||||||||  || |||||||||||   ||||||||| ||||||| | |||||| ||||||||| ||||    
T  3403248 tttcaaagtaataaagtctataaaatagttagtctgattaatggaatattaagtgtgacttaaatgtgagaccacatt 3403325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 3443571 - 3443494
Alignment:
Q  170 tttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagaccccatt 247  Q
    ||||||| ||||||||||  || |||||||||||   ||||||||| ||||||| | |||||| ||||||||| ||||    
T  3443571 tttcaaagtaataaagtctataaaatagttagtctgattaatggaatattaagtgtgacttaaatgtgagaccacatt 3443494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 74
Target Start/End: Complemental strand, 27131706 - 27131678
Alignment:
Q  46 actgttggaataagccctaatagccaatc 74  Q
    |||||||||||||||||||||||||||||    
T  27131706 actgttggaataagccctaatagccaatc 27131678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 143 - 340
Target Start/End: Original strand, 13211305 - 13211502
Alignment:
Q  143 aggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacc 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13211305 aggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacc 13211404  T
Q  243 ccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13211405 ccattaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtgagatatcattaaagcatagagactattatgtaggtagac 13211502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 140 - 340
Target Start/End: Original strand, 6110064 - 6110264
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6110064 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 6110163  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  6110164 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtaggtaga 6110263  T
Q  340 c 340  Q
    |    
T  6110264 c 6110264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 140 - 340
Target Start/End: Complemental strand, 10572799 - 10572599
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10572799 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 10572700  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  10572699 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtaggtaga 10572600  T
Q  340 c 340  Q
    |    
T  10572599 c 10572599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 142 - 340
Target Start/End: Complemental strand, 16482688 - 16482490
Alignment:
Q  142 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16482688 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 16482589  T
Q  242 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16482588 cccattaaacataaggaaactactctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagac 16482490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 146 - 340
Target Start/End: Complemental strand, 17781319 - 17781125
Alignment:
Q  146 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17781319 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagacccca 17781220  T
Q  246 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  17781219 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagac 17781125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 140 - 340
Target Start/End: Complemental strand, 15601091 - 15600891
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15601091 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 15600992  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  15600991 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtaggtaga 15600892  T
Q  340 c 340  Q
    |    
T  15600891 c 15600891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 140 - 340
Target Start/End: Complemental strand, 15607636 - 15607436
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15607636 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 15607537  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  15607536 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtaggtaga 15607437  T
Q  340 c 340  Q
    |    
T  15607436 c 15607436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 146 - 340
Target Start/End: Complemental strand, 10579556 - 10579362
Alignment:
Q  146 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  10579556 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgttaaatggaacattaagtataacttaattgtgagacccca 10579457  T
Q  246 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10579456 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtgagatatcattaaagcatagagactattatgtaggtagac 10579362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 142 - 340
Target Start/End: Original strand, 18522665 - 18522863
Alignment:
Q  142 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18522665 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 18522764  T
Q  242 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  18522765 cccattaaacataaggaaactattcttaaagtatccgtagtcaagctttattgagaagtgggatatcatttaagcatagagactattatgtaggtagac 18522863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 140 - 340
Target Start/End: Original strand, 13248607 - 13248807
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13248607 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 13248706  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||    
T  13248707 accccattaaacataaggaaactattctcaaagtattcgtagtcaagctttgttgagaagtgggataacattaaagcatagagactattatgtaggtaga 13248806  T
Q  340 c 340  Q
    |    
T  13248807 c 13248807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 140 - 340
Target Start/End: Complemental strand, 15357793 - 15357593
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  15357793 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctagattagttagtccgtttaatggaacattaagtataacttaattgtgag 15357694  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  15357693 accccattaaacataaggaacctattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaaacatagagactattatgtaggtaga 15357594  T
Q  340 c 340  Q
    |    
T  15357593 c 15357593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 142 - 340
Target Start/End: Original strand, 18519980 - 18520175
Alignment:
Q  142 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18519980 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 18520079  T
Q  242 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    ||| |||||||||||||||||||||| ||   |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18520080 cccgttaaacataaggaaactattcttaa---atccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagac 18520175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 140 - 326
Target Start/End: Original strand, 8490488 - 8490674
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  8490488 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgag 8490587  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagacta 326  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  8490588 accccattaaacataaggaaactattctcaaagtatctgtagtcaagctttgttgagaagtgggatatcattaaagcatagagacta 8490674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 146 - 340
Target Start/End: Complemental strand, 19089946 - 19089752
Alignment:
Q  146 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||     
T  19089946 catttctttattgattttgttttgtttcaaaataataaagtccctagattagttagtccgtttaatggaacattaagtataacttaattgtgagacccct 19089847  T
Q  246 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  19089846 ttaaacataatgaaactattcttaaagtatccgtagtcaagctttattgagaagtgggatatcattaaatcatagagactattatgtaggtagac 19089752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 142 - 340
Target Start/End: Complemental strand, 17200389 - 17200191
Alignment:
Q  142 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||    
T  17200389 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgatac 17200290  T
Q  242 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    ||| |||||||||| ||||||||||| |||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||    
T  17200289 ccctttaaacataatgaaactattcttaaagtatccgtagttaagctttattgagatgtgtgatatcattaaagcatagagactattatgtgggtagac 17200191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 140 - 301
Target Start/End: Complemental strand, 18640953 - 18640792
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18640953 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 18640854  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtg 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18640853 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtg 18640792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 159 - 340
Target Start/End: Complemental strand, 15342407 - 15342226
Alignment:
Q  159 attttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagaccccattaaacataagga 258  Q
    ||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15342407 attttgttttgtttcaaaataataaagtccctagaatagtttgttcgtttaatggaacattaagtataacttaattgtgagaccccattaaacataagga 15342308  T
Q  259 aactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    | ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  15342307 acctattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaaacatagagactattatgtaggtagac 15342226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 142 - 340
Target Start/End: Original strand, 13516813 - 13517011
Alignment:
Q  142 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||    
T  13516813 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttcatggaacattaagtataacttaattgtgagac 13516912  T
Q  242 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    ||| |||||||||||||||| ||||| |||||||| |||||||||||||||||||||||  ||||||||||||||| |||||||||||||| |||||||    
T  13516913 cccgttaaacataaggaaacgattcttaaagtatctgtagtcaagctttattgagaagtaggatatcattaaagcacagagactattatgtgggtagac 13517011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 146 - 340
Target Start/End: Complemental strand, 32057101 - 32056907
Alignment:
Q  146 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||| ||||| |||||||     
T  32057101 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacatcaagtataactttattgtaagaccccg 32057002  T
Q  246 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    |||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  32057001 ttaaacataaagaaactattcttaaagtgtccgtagtcaaactttattgagaagtgggatatcattaaagcatagagactattatgtgggtagac 32056907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 146 - 332
Target Start/End: Complemental strand, 1647726 - 1647536
Alignment:
Q  146 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataa----cttaattgtgagac 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    ||||||||||||||    
T  1647726 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataattaacttaattgtgagac 1647627  T
Q  242 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgt 332  Q
    ||| |||||||||||||||||||| | |||||||||||| |||||||||||||||||  | ||||| ||||||||||||||||||||||||    
T  1647626 cccgttaaacataaggaaactatttttaaagtatccgtaatcaagctttattgagaaaagggatataattaaagcatagagactattatgt 1647536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 140 - 332
Target Start/End: Original strand, 29924971 - 29925163
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||  ||||||||||| |||||||||||    
T  29924971 acaagacatttctttattgattttgttttgtttcaaaataataaagcccctaaaatagttagtccgtttaatggattattaagtataatttaattgtgag 29925070  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgt 332  Q
    ||||||||||| ||||||| | |||||| ||| |||  ||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||    
T  29925071 accccattaaatataaggacattattcttaaaatatatgtagtcaagctttattgtgaagtgagatatcattaaagcatggaggctattatgt 29925163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 140 - 332
Target Start/End: Original strand, 29974124 - 29974316
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||  ||||||||||| |||||||||||    
T  29974124 acaagacatttctttattgattttgttttgtttcaaaataataaagcccctaaaatagttagtccgtttaatggattattaagtataatttaattgtgag 29974223  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgt 332  Q
    ||||||||||| ||||||| | |||||| ||| |||  ||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||    
T  29974224 accccattaaatataaggacattattcttaaaatatatgtagtcaagctttattgtgaagtgagatatcattaaagcatggaggctattatgt 29974316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 142 - 328
Target Start/End: Original strand, 16200128 - 16200313
Alignment:
Q  142 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 241  Q
    ||||||||||||  ||| |||| |||||||||||||||||||||||| ||||||||||||| | ||||||||||||||| ||||||||||||||||||||    
T  16200128 aaggcatttcttcgttg-ttttattttgtttcaaaataataaagtccttagaatagttagttcgtttaatggaacattatgtataacttaattgtgagac 16200226  T
Q  242 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactatt 328  Q
    ||||||||||||||||| | |||||| ||||||| |||||||||| ||||||| |||||| |||||||||||||||| |||||||||    
T  16200227 cccattaaacataaggacattattcttaaagtattcgtagtcaagatttattgtgaagtgggatatcattaaagcatggagactatt 16200313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 142 - 328
Target Start/End: Original strand, 16200434 - 16200619
Alignment:
Q  142 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 241  Q
    ||||||||||||  ||| |||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  16200434 aaggcatttcttcgttg-ttttattttgtttcaaaataataaagtccttagaatagttagtccgtttaatggaacattatgtataacttaattgtgagac 16200532  T
Q  242 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactatt 328  Q
     ||| |||||||||||| | |||||| ||||||| |||||||||| ||||||| |||||| ||| ||||||||||||  ||||||||    
T  16200533 tccaataaacataaggacattattcttaaagtattcgtagtcaagatttattgtgaagtgggatgtcattaaagcatgaagactatt 16200619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 147 - 340
Target Start/End: Complemental strand, 24253589 - 24253395
Alignment:
Q  147 atttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgaga-cccca 245  Q
    ||||||||||||||||||||||  |||||||||||||||||| |||||||| | || | ||| |||||||||||||||| ||||||| |||||| |||||    
T  24253589 atttctttattgattttgttttacttcaaaataataaagtccttagaatagctcgttcgtttgatggaacattaagtatgacttaatcgtgagatcccca 24253490  T
Q  246 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    | ||||||||||| |||||||| |||||||  || |||||  |||||||  ||||||| || ||||||||||||||||||||||||| |||||||    
T  24253489 tcaaacataaggacactattcttaaagtatatgtggtcaaaatttattgtaaagtgaggtaacattaaagcatagagactattatgtcggtagac 24253395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 246 - 340
Target Start/End: Original strand, 17136465 - 17136559
Alignment:
Q  246 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||    
T  17136465 ttaaacataaggaaactattcttaaagtatccgtagtcaagctttattgagaagtgggatatcattaaaacatagagactattatgtgggtagac 17136559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 142 - 204
Target Start/End: Original strand, 18534758 - 18534820
Alignment:
Q  142 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtcc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18534758 aaggcatttctttattgattttgttttgtttcaaaataataaagtccatagaatagttagtcc 18534820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 18510924 - 18510969
Alignment:
Q  142 aaggcatttctttattgattttgttttgtttcaaaataataaagtc 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  18510924 aaggcatttctttattgattttgttttgtttcaaaataataaagtc 18510969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 74
Target Start/End: Original strand, 8490394 - 8490422
Alignment:
Q  46 actgttggaataagccctaatagccaatc 74  Q
    |||||||||||||||||||||||||||||    
T  8490394 actgttggaataagccctaatagccaatc 8490422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 74
Target Start/End: Complemental strand, 10579655 - 10579627
Alignment:
Q  46 actgttggaataagccctaatagccaatc 74  Q
    |||||||||||||||||||||||||||||    
T  10579655 actgttggaataagccctaatagccaatc 10579627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 140 - 340
Target Start/End: Original strand, 18288 - 18488
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18288 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaattgaacattaagtataacttaattgtgag 18387  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  18388 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtaggtaga 18487  T
Q  340 c 340  Q
    |    
T  18488 c 18488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 140 - 340
Target Start/End: Original strand, 29327784 - 29327984
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  29327784 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtcagtttaatggaacattaagtataacttaattgtgag 29327883  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29327884 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 29327983  T
Q  340 c 340  Q
    |    
T  29327984 c 29327984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 140 - 340
Target Start/End: Complemental strand, 11536269 - 11536069
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  11536269 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtacaacttaattgtgag 11536170  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11536169 accccattaaacataaggaacctattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 11536070  T
Q  340 c 340  Q
    |    
T  11536069 c 11536069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 140 - 340
Target Start/End: Complemental strand, 11543187 - 11542987
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  11543187 acaatgcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtcag 11543088  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11543087 accccattaaacataaggaacctattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 11542988  T
Q  340 c 340  Q
    |    
T  11542987 c 11542987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 142 - 340
Target Start/End: Original strand, 15152445 - 15152643
Alignment:
Q  142 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 241  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15152445 aaggcatttctttattgagtttgttttgtttcaaaataataaagttcctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 15152544  T
Q  242 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    ||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  15152545 cccgttaaacatacggaaactattcttaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagac 15152643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 142 - 340
Target Start/End: Original strand, 15148144 - 15148342
Alignment:
Q  142 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 241  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| || |||||||||||||||||||||||||||||    
T  15148144 aaggcatttctttattgagtttgttttgtttcaaaataataaagttcctagaatagttagtccgtttgattgaacattaagtataacttaattgtgagac 15148243  T
Q  242 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    ||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  15148244 cccgttaaacataaggaaactattcttaaagtatctgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtagac 15148342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 142 - 340
Target Start/End: Original strand, 18561009 - 18561207
Alignment:
Q  142 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||    
T  18561009 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaactgtgagac 18561108  T
Q  242 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    ||| |||||||| ||||||||||||| |||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||    
T  18561109 cccgttaaacattaggaaactattcttaaagtatctgtagtcaagctttattgagaggtgggatatcattaaagcatagagactattatgtgggtagac 18561207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 142 - 332
Target Start/End: Original strand, 12750828 - 12751018
Alignment:
Q  142 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 241  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  12750828 aaggcatttctttattgattttgttttgtttcaaagtaataaagtccctagaatagttagtccgtttaatgaaacattaagtataacttaattgtgagac 12750927  T
Q  242 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgt 332  Q
    | | |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  12750928 ctcgttaaacataaagaaactattcttaaagtatccgtagtcaagctttattgagaagttggatatcattaaagcatagagactattatgt 12751018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 146 - 340
Target Start/End: Original strand, 12738542 - 12738736
Alignment:
Q  146 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 245  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||   ||||||| |||||||| ||||||||||||||||||||       
T  12738542 catttctttattgattttattttgtttcaaaataataaagtccctagaatagttagtttgtttaatgaaacattaattataacttaattgtgagaccttg 12738641  T
Q  246 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  12738642 ttaaacataaggaaactattcttaaagtatctgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtgggtagac 12738736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 142 - 332
Target Start/End: Complemental strand, 18258047 - 18257857
Alignment:
Q  142 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||| |||||||||||||||    
T  18258047 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaataattagtctgtttaatggaacattaagtatgacttaattgtgagac 18257948  T
Q  242 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgt 332  Q
    ||||||||||| ||||| | |||||| |||||||||||||||||| ||| |||  ||||  |||| || ||| ||||| ||||||||||||    
T  18257947 cccattaaacacaaggacattattcttaaagtatccgtagtcaagtttttttgttaagtaggataacaataatgcataaagactattatgt 18257857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 146 - 328
Target Start/End: Original strand, 13392157 - 13392338
Alignment:
Q  146 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 245  Q
    ||||||||| |||| |||||||||||||||||||||||||| ||||||| | ||||||   |||||||| |||||||| | ||||||| |||||| ||||    
T  13392157 catttctttgttgactttgttttgtttcaaaataataaagttcctagaacaattagtctgcttaatggagcattaagtgtgacttaatcgtgaga-ccca 13392255  T
Q  246 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactatt 328  Q
    |||||   ||||| | |||||| ||||||||  ||||||| |||||||| |||  | |||| ||||||| |||||||||||||    
T  13392256 ttaaatgaaaggacattattcttaaagtatcaatagtcaaactttattgtgaaaagggataacattaaaacatagagactatt 13392338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 162 - 332
Target Start/End: Original strand, 2364917 - 2365086
Alignment:
Q  162 ttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagaccccattaaacataaggaaac 261  Q
    ||||| |||||||||||||||||||| |||||||| ||||||  | |||||||||||||||| |  |||||| |||||| ||||||||||  || || |     
T  2364917 ttgttatgtttcaaaataataaagtctctagaataattagtctttctaatggaacattaagtgtggcttaatcgtgagaacccattaaactaaatgacat 2365016  T
Q  262 tattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgt 332  Q
    |||||| ||| ||| ||||||||| | |||||| ||| ||||||| ||||||| |||||||||||| ||||    
T  2365017 tattcttaaaatattcgtagtcaa-ccttattgtgaaatgagataacattaaaacatagagactatcatgt 2365086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 173 - 332
Target Start/End: Original strand, 7396221 - 7396381
Alignment:
Q  173 caaaataataaagtccctagaatagttagtccatttaa-tggaacattaagtataacttaattgtgagaccccattaaacataaggaaactattctcaaa 271  Q
    |||||||| || ||| |||||||||||||| ||||||| ||||||||||||||| |||||||  |||||||| |||||||||||| ||| |||||| |||    
T  7396221 caaaataaaaatgtcgctagaatagttagttcatttaaatggaacattaagtatgacttaatcttgagaccctattaaacataagaaaattattcttaaa 7396320  T
Q  272 gtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgt 332  Q
      ||  |||||||||| ||| || ||| |  |||   ||||||||||||||||||||||||    
T  7396321 acatatgtagtcaagccttagtgtgaaatacgatgatattaaagcatagagactattatgt 7396381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 330
Target Start/End: Original strand, 39111819 - 39112002
Alignment:
Q  146 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 245  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||||||||  ||||| ||||||| |||||||||||  |||||||    ||||  |     
T  39111819 catttctttattaattttgttttatttcaaaa-aataaagtccctagaatagcgagtccgtttaatgaaacattaagtacgacttaatcacaagacatct 39111917  T
Q  246 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattat 330  Q
    ||||||||||||| ||||||   ||| ||| |  |||| |||||||||| |||  || ||| |||||||  ||||||||||||||    
T  39111918 ttaaacataaggacactatttcaaaaatattcacagtccagctttattgtgaaacgaaataacattaaaatatagagactattat 39112002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 257
Target Start/End: Original strand, 3132748 - 3132791
Alignment:
Q  214 aacattaagtataacttaattgtgagaccccattaaacataagg 257  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  3132748 aacattaagtgtaacttaattgtgagaccccattaaacataagg 3132791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 10234179 - 10234244
Alignment:
Q  190 tagaatagttagtccatttaatggaacattaagtataacttaattgtgagaccccattaaacataa 255  Q
    ||||||||||||||| ||||||| | |||||| |||||||||||  |||||  |||||||||||||    
T  10234179 tagaatagttagtccgtttaatgaaccattaaatataacttaatcatgagattccattaaacataa 10234244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 172
Target Start/End: Complemental strand, 2653239 - 2653207
Alignment:
Q  140 acaaggcatttctttattgattttgttttgttt 172  Q
    |||||||||||||||||||||||||||||||||    
T  2653239 acaaggcatttctttattgattttgttttgttt 2653207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 140 - 340
Target Start/End: Complemental strand, 7141 - 6941
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  7141 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaactgtgag 7042  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7041 accctattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 6942  T
Q  340 c 340  Q
    |    
T  6941 c 6941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 140 - 340
Target Start/End: Complemental strand, 14157 - 13957
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||    
T  14157 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctacaatagttagtccgtttaatggaacattaagtataacttaactgtgag 14058  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  14057 accccattaaacataaggaaactattctcaaagtatctgtagtcaagctttattgagaagtgggatatcattaaagcataaagactattatgtaggtaga 13958  T
Q  340 c 340  Q
    |    
T  13957 c 13957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 74
Target Start/End: Complemental strand, 14251 - 14223
Alignment:
Q  46 actgttggaataagccctaatagccaatc 74  Q
    |||||||||||||||||||||||||||||    
T  14251 actgttggaataagccctaatagccaatc 14223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 140 - 340
Target Start/End: Original strand, 21940665 - 21940865
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21940665 acaatgcatttctttattgattttgttttgtttcaaaataataaagttcctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 21940764  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  21940765 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 21940864  T
Q  340 c 340  Q
    |    
T  21940865 c 21940865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 142 - 340
Target Start/End: Original strand, 22171491 - 22171687
Alignment:
Q  142 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 241  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  22171491 aaggcatttccttattgattttgttttatttcaaaataataaagtccctagaatagttagtctgtttaatggaacattaagtataacttaattgtgagac 22171590  T
Q  242 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  22171591 cccattaaacata--gaaactattctcaaagtatccgtagtcaagctttattgagaagtggaatatcattaaagcatagagactattatgtaggtagac 22171687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 146 - 340
Target Start/End: Original strand, 24642655 - 24642849
Alignment:
Q  146 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 245  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||     
T  24642655 catttctttattgattttgttttgtttcaaaatcataaagtccctagaattgttagtccgtttaatggaacattaagtataacttaattgtgagaccccg 24642754  T
Q  246 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  24642755 ttaaacataaggaaactattcttaaagtattcgtagtcaagctttattgagaagtgagatatcattaaagtatagagactattatgtgggtagac 24642849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 142 - 340
Target Start/End: Original strand, 28554885 - 28555083
Alignment:
Q  142 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 241  Q
    |||||||||||||||||||||||||| |||||||||||||||| | |||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28554885 aaggcatttctttattgattttgtttagtttcaaaataataaaatacctaaaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 28554984  T
Q  242 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28554985 cccattaaacataatgaaactattctaaaagtatccgtagtcaagctttgttgagaagtgggatatcattaaagcatagagactattatgtaggtagac 28555083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 146 - 339
Target Start/End: Original strand, 6094129 - 6094322
Alignment:
Q  146 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  6094129 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagaccccg 6094228  T
Q  246 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    |||||||||||||||||||| | |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||    
T  6094229 ttaaacataaggaaactatttttaaagtatctgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatatgggtaga 6094322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 146 - 273
Target Start/End: Original strand, 24636860 - 24636987
Alignment:
Q  146 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 245  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  24636860 catttctttcttgattttgttttgtttcaaaataataaagtccctagaatagttagtccttttaatggaacattaagtataacttaattgtgagaccccg 24636959  T
Q  246 ttaaacataaggaaactattctcaaagt 273  Q
    |||||||||||||||||||||| |||||    
T  24636960 ttaaacataaggaaactattcttaaagt 24636987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 152 - 340
Target Start/End: Complemental strand, 38232570 - 38232384
Alignment:
Q  152 tttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagaccccattaaac 251  Q
    ||||||||||||||||| ||||||||||||||| || |||||||||||||||  ||||||  |   ||| ||||||||||||  ||| || |||||||||    
T  38232570 tttattgattttgttttatttcaaaataataaa-tctctagaatagttagtctgtttaataaatttttaggtataacttaatcatgacactccattaaac 38232472  T
Q  252 ataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
     |||  | | |||||| |||||||  |||||||| ||||||||  ||||||||||   |||||||||| | |||||| ||| |||||||    
T  38232471 gtaa-aatagtattcttaaagtatttgtagtcaaactttattgtaaagtgagatagtcttaaagcataaaaactattttgtgggtagac 38232384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 161 - 315
Target Start/End: Original strand, 2375027 - 2375179
Alignment:
Q  161 tttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagaccccattaaacataaggaaa 260  Q
    |||||||||||||||||||||||| |||||| |||| |||||| ||||||||||||||| |  || |||||||  ||| | ||||||||||||| | | |    
T  2375027 tttgttttgtttcaaaataataaactccctataataattagtcaatttaatggaacatttatgatgacttaatcatga-aacccattaaacatacgaata 2375125  T
Q  261 ctattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaag 315  Q
     |||| | |||||||  ||||||| | ||||||| | ||||||||| ||||||||    
T  2375126 ttatttttaaagtatatgtagtcacgatttattgcg-agtgagataacattaaag 2375179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 170 - 331
Target Start/End: Complemental strand, 32873019 - 32872857
Alignment:
Q  170 tttcaaaataataaagtccctagaatagttagtccattta-atggaacattaagtataacttaattgtgagaccccattaaacataaggaaactattctc 268  Q
    ||||||||||||||||||| || |||||||  |||||||| || ||||||||||||| |||||||||||||| | |||| || | |  || | || | |     
T  32873019 tttcaaaataataaagtccttataatagttcatccatttatatagaacattaagtatgacttaattgtgagatctcattgaaaagagtgacaatactatt 32872920  T
Q  269 aaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatg 331  Q
    ||| |||  ||||| ||| ||||||| |||||| |||| ||| ||||||||||||||||||||    
T  32872919 aaaatatttgtagttaagatttattgtgaagtgggataacatcaaagcatagagactattatg 32872857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 10920234 - 10920297
Alignment:
Q  178 taataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 241  Q
    ||||||| | ||||||||| ||||||  |||||||||||||||||||| | ||||| |||||||    
T  10920234 taataaaattcctagaataattagtctgtttaatggaacattaagtatgagttaatcgtgagac 10920297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 74
Target Start/End: Original strand, 21940571 - 21940599
Alignment:
Q  46 actgttggaataagccctaatagccaatc 74  Q
    |||||||||||||||||||||||||||||    
T  21940571 actgttggaataagccctaatagccaatc 21940599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 140 - 340
Target Start/End: Complemental strand, 24695673 - 24695473
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24695673 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 24695574  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24695573 accccattaaacataatgaaactattctaaaagtatccgtagtcaagctttattgagaagtgagatatcaataaagcatagagactattatgtaggtaga 24695474  T
Q  340 c 340  Q
    |    
T  24695473 c 24695473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 140 - 340
Target Start/End: Complemental strand, 18570070 - 18569870
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  18570070 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaattgaacattaagtataacttaattgtgag 18569971  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    ||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||| ||||||    
T  18569970 accccgttaaacataaggaaactactcttaaagtatccgtagtcaagctttattgagaagtggaatatcattaaagcataaagactattatgttggtaga 18569871  T
Q  340 c 340  Q
    |    
T  18569870 c 18569870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 142 - 340
Target Start/End: Complemental strand, 19714703 - 19714505
Alignment:
Q  142 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 241  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19714703 aaggcatttctttattgattttgttttatttcaaagtaataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 19714604  T
Q  242 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    ||| |||||||||||||| ||||||| ||| |||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||    
T  19714603 cccgttaaacataaggaatctattcttaaaatatccgaagtcaagctttattgagaagtaggatatcattaaagcatagagactattatgtgggtagac 19714505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 146 - 340
Target Start/End: Complemental strand, 19707419 - 19707225
Alignment:
Q  146 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 245  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||     
T  19707419 catttctttattgattttgttttatttcaaagtaataaagtccctagaatagttagtcagtttaatggaacattaagtataacttaattgtgagaccccg 19707320  T
Q  246 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    |||||||||||||| ||||||| ||| |||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||    
T  19707319 ttaaacataaggaatctattcttaaaatatccgaagtcaagctttattgagaagtaggatatcattaaagcatagagactattatgtgggtagac 19707225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 145 - 328
Target Start/End: Complemental strand, 27347679 - 27347497
Alignment:
Q  145 gcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccc 244  Q
    |||||||||| |||||||||||||| |||||||||||||||||| ||||||| ||| ||  ||||||||| |||||||| | ||||||| |||||| |||    
T  27347679 gcatttctttgttgattttgttttgattcaaaataataaagtccttagaataattaatctgtttaatggagcattaagtgtgacttaatcgtgaga-ccc 27347581  T
Q  245 attaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactatt 328  Q
    |||||||  ||||| | |||||| |||||||  ||||||||||||||||| |||  | |||| |||||||||||||||||||||    
T  27347580 attaaacgaaaggacattattcttaaagtatatgtagtcaagctttattgtgaaaagggataacattaaagcatagagactatt 27347497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 146 - 332
Target Start/End: Complemental strand, 22547217 - 22547031
Alignment:
Q  146 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 245  Q
    ||||| |||||| |||||||||| ||| |||||||||||  | ||| |||||||||||  |||||||||||||||||||||||||||| |||||| | ||    
T  22547217 catttatttattcattttgttttattttaaaataataaaaccgctataatagttagtcggtttaatggaacattaagtataacttaatcgtgagatctca 22547118  T
Q  246 ttaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgt 332  Q
    ||||| ||| ||| | |||| | ||||||| || |||||| |||||||| ||||||||||| |||||||  ||||||||||||||||    
T  22547117 ttaaatatatggacattatttttaaagtattcgcagtcaaactttattgtgaagtgagataacattaaaatatagagactattatgt 22547031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 140 - 249
Target Start/End: Original strand, 39537962 - 39538071
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||| |||||||||| ||||||||||||||||||||||  | |||||| |||||||||| || | ||||||||||||||||||||||||||||||||||    
T  39537962 acaagccatttctttaatgattttgttttgtttcaaaatggttaagtccttagaatagttggttcgtttaatggaacattaagtataacttaattgtgag 39538061  T
Q  240 accccattaa 249  Q
    ||| ||||||    
T  39538062 acctcattaa 39538071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 144 - 325
Target Start/End: Complemental strand, 17285935 - 17285754
Alignment:
Q  144 ggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagaccc 243  Q
    ||||||| ||||||||||||||| ||||||||||||||||  |||  |||||||||||||  |||||||||||||||||| | ||||||| |||| ||||    
T  17285935 ggcatttatttattgattttgttatgtttcaaaataataatctccagagaatagttagtctgtttaatggaacattaagtgtgacttaatcgtgaaaccc 17285836  T
Q  244 cattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagact 325  Q
     | |||||  || || | |||||| ||||||| | ||||| | |||||||| ||| || ||||  ||||||||||| |||||    
T  17285835 tagtaaactaaatgacattattcttaaagtattcatagtcgatctttattgtgaattgggatagtattaaagcatatagact 17285754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 146 - 249
Target Start/End: Original strand, 31886537 - 31886640
Alignment:
Q  146 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 245  Q
    |||||||||| |||||||||||||||||||| ||||||||||| ||||||| ||||| |||||||| |||||| |||||  ||||||| ||||||| |||    
T  31886537 catttctttagtgattttgttttgtttcaaattaataaagtccttagaataattagttcatttaattgaacatcaagtacgacttaatcgtgagactcca 31886636  T
Q  246 ttaa 249  Q
    ||||    
T  31886637 ttaa 31886640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 205 - 340
Target Start/End: Complemental strand, 18807176 - 18807041
Alignment:
Q  205 atttaatggaacattaagtataacttaattgtgagaccccattaaacataa-ggaaactattctcaaagtatccgtagtcaagctttattgagaagtgag 303  Q
    ||||||||||||||||||| | ||||||| ||||||| |||||||| |||| ||| | |||||| ||||||||  ||||||||| |||||| ||||| ||    
T  18807176 atttaatggaacattaagtgtgacttaatcgtgagacaccattaaa-ataatggacattattcttaaagtatctatagtcaagcgttattgtgaagtaag 18807078  T
Q  304 atatcattaaagcatagagactattatgtaggtagac 340  Q
    ||| || |||||||||||||||||||||  |||||||    
T  18807077 ataacaataaagcatagagactattatgcgggtagac 18807041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 144 - 325
Target Start/End: Complemental strand, 17299088 - 17298907
Alignment:
Q  144 ggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagaccc 243  Q
    ||||||| ||||||||||||||| |||||  |||||||||  |||  ||||||||||||||  |||||||||||||||||   ||||||| |||| ||||    
T  17299088 ggcatttatttattgattttgttatgtttataaataataatatccagagaatagttagtccgattaatggaacattaagtgcgacttaatcgtgaaaccc 17298989  T
Q  244 cattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagact 325  Q
     | |||||  || || | |||||| ||||||| | ||||| | ||||||||  ||||| ||||  ||||||||||| |||||    
T  17298988 tagtaaactaaatgacattattcttaaagtattcatagtcgatctttattgttaagtgggatagtattaaagcatatagact 17298907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 253 - 340
Target Start/End: Original strand, 39538701 - 39538788
Alignment:
Q  253 taaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    |||||| |||||||| ||| ||||| |||| ||||||||||| |||||| ||||||||||||||||  |||||||||||| |||||||    
T  39538701 taaggacactattcttaaaatatccatagttaagctttattgtgaagtgggatatcattaaagcatgaagactattatgtgggtagac 39538788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 256
Target Start/End: Complemental strand, 33477479 - 33477389
Alignment:
Q  166 tttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagaccccattaaacataag 256  Q
    ||||||||||||||||||||||| || ||||||||| |   |||||||| |||||||| | |  |||| |||||||| |||||| ||||||    
T  33477479 tttgtttcaaaataataaagtccttacaatagttaggctgattaatggatcattaagtgtgatctaatcgtgagacctcattaatcataag 33477389  T

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Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 140 - 336
Target Start/End: Complemental strand, 21330455 - 21330259
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21330455 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 21330356  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggt 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21330355 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggt 21330259  T

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Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 140 - 340
Target Start/End: Original strand, 18796506 - 18796706
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    |||||| |||| ||| || |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18796506 acaaggaatttatttgtttattttgttttgtttcaaaataacaaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgag 18796605  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    ||| | || |||||||||| | |||||| ||| |||| ||||||||||||||||| ||||||  ||||||||||||||| ||||||||||||| ||||||    
T  18796606 acctcttttaacataaggatattattcttaaattatctgtagtcaagctttattgtgaagtggtatatcattaaagcattgagactattatgtgggtaga 18796705  T
Q  340 c 340  Q
    |    
T  18796706 c 18796706  T

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Target: chr2; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 142 - 338
Target Start/End: Original strand, 18619807 - 18620002
Alignment:
Q  142 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 241  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||  ||||||||| |||||||| | |||||||| |||||     
T  18619807 aaggaatttctttgttgattttgttttgtttcaaaataataaagtccctataataattagtctgtttaatggagcattaagtgtgacttaattatgaga- 18619905  T
Q  242 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtag 338  Q
    ||||||||||| ||||| | |||||| |||||||| || ||||| |||||||| |||  | ||||  ||||||||||| |||||||||||| |||||    
T  18619906 cccattaaacaaaaggatattattcttaaagtatctgtggtcaaactttattgtgaaaagggataatattaaagcatatagactattatgtgggtag 18620002  T

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Target: chr2; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 146 - 285
Target Start/End: Complemental strand, 19692737 - 19692598
Alignment:
Q  146 catttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagacccca 245  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||  |||||||||||||||||  | |||||||  ||||| | ||    
T  19692737 catttctttattgattttgttttgtttcaaaataatgaagtccctagaataattagtctgtttaatggaacattaagcctgacttaatcatgagatctca 19692638  T
Q  246 ttaaacataaggaaactattctcaaagtatccgtagtcaa 285  Q
    ||||||  ||||||| |||||| ||||||||| |||||||    
T  19692637 ttaaactaaaggaaattattcttaaagtatccttagtcaa 19692598  T

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Target: chr2; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 206 - 332
Target Start/End: Original strand, 20977958 - 20978084
Alignment:
Q  206 tttaatggaacattaagtataacttaattgtgagaccccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagat 305  Q
    ||||||||||||||||| |||| |||||  ||||| ||||||||| ||||||||| |||||| |||  |||||||||||||||||| || ||||||||||    
T  20977958 tttaatggaacattaagaataatttaatcatgagatcccattaaaaataaggaaattattcttaaaacatccgtagtcaagctttaatgtgaagtgagat 20978057  T
Q  306 atcattaaagcatagagactattatgt 332  Q
    |||| ||||||||||||||||||||||    
T  20978058 atcactaaagcatagagactattatgt 20978084  T

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Target: chr2; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 174 - 340
Target Start/End: Original strand, 36270199 - 36270366
Alignment:
Q  174 aaaataataaagtccctagaatagttagtcca-tttaatggaacattaagtataacttaattgtgagaccccattaaacataaggaaactattctcaaag 272  Q
    |||||||||||||||||||||||||||||  | || |||| ||  |||||| | ||||||| |||||||  ||||||||| || || |||||||| |||     
T  36270199 aaaataataaagtccctagaatagttagtttacttaaatgaaatgttaagtgtgacttaatcgtgagacatcattaaacacaatgacactattcttaaaa 36270298  T
Q  273 tatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
     ||||||| |||||||||| || |||| | |||| |||||||| ||| |||||||| ||| |||||||    
T  36270299 catccgtaatcaagctttagtgtgaagagggataacattaaagtataaagactattgtgtgggtagac 36270366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 332
Target Start/End: Original strand, 18822115 - 18822275
Alignment:
Q  174 aaaataataaagtccctagaatagttagtccatttaa-tggaaca-ttaagtataacttaattgtgagaccccattaaacataaggaaactattctcaaa 271  Q
    ||||||||||||||  |||||| |||||| | ||||| ||||| | |||||| |  |||||| ||||||| |||||||||| ||||| |||||||| |||    
T  18822115 aaaataataaagtctatagaattgttagttcgtttaaatggaaaaattaagtgtggcttaatcgtgagacaccattaaacacaaggacactattcttaaa 18822214  T
Q  272 gtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgt 332  Q
      ||  ||| |||||||||| |  |||||| ||||||||||||||| | ||| ||||||||    
T  18822215 acatatgtaatcaagctttagtttgaagtgggatatcattaaagcagatagattattatgt 18822275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 140 - 340
Target Start/End: Original strand, 7107 - 7307
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  7107 acaaggtatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccgtttaatagaacattaagtataacttaattgtgag 7206  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7207 accccattaaacataatgaaactattctaaaagtatccgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 7306  T
Q  340 c 340  Q
    |    
T  7307 c 7307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 140 - 340
Target Start/End: Complemental strand, 26197 - 25997
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26197 acaagacatttctttattgattttgttttgtttcaaaataataaagtccttagaatagttagtccatttaatggaacattaaatataacttaattgtgag 26098  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||    
T  26097 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgaaaagtgggatatcattaaagcatagcgactattatgtaggtaga 25998  T
Q  340 c 340  Q
    |    
T  25997 c 25997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 140 - 340
Target Start/End: Original strand, 993 - 1193
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgag 239  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||    
T  993 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctaaaatagttagtccgtttaatgaaacattaagtataacttaattgtgag 1092  T
Q  240 accccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtaga 339  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1093 accccattaaacataaagaaactattctcaaagtatctgtagtcaagctttattgagaagtgggatatcattaaagcatagagactattatgtaggtaga 1192  T
Q  340 c 340  Q
    |    
T  1193 c 1193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 142 - 340
Target Start/End: Original strand, 5531 - 5729
Alignment:
Q  142 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 241  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5531 aaggcatttctttattgatttatttttgtttcaaaataataaagtccctagaatagttagtccgtttaatggaacattaagtataacttaattgtgagac 5630  T
Q  242 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagagactattatgtaggtagac 340  Q
    ||| ||||||||||||||| |||||| |||||||  |||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||    
T  5631 cccgttaaacataaggaaattattcttaaagtatatgtagtcaagctttattgagaagtgggatatcattaaagcataaagactattatgtgggtagac 5729  T

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Target: scaffold0008 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 142 - 323
Target Start/End: Complemental strand, 230545 - 230365
Alignment:
Q  142 aaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtccatttaatggaacattaagtataacttaattgtgagac 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  230545 aaggcatttctttattgattttgttttgtttcaaaataataaagttcttataatagttagtccgtttaatggaacattaagtataacttaattgtgagac 230446  T
Q  242 cccattaaacataaggaaactattctcaaagtatccgtagtcaagctttattgagaagtgagatatcattaaagcatagaga 323  Q
    ||| |||||||||||||||| ||||| |||||||  ||||||||| |||||||||||||| |||||||||||||||||||||    
T  230445 ccc-ttaaacataaggaaaccattcttaaagtatttgtagtcaagatttattgagaagtgggatatcattaaagcatagaga 230365  T

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Target: scaffold0176 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 8510 - 8446
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtcc 204  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8510 acaagacatttctttattgattttgttttgtttcaaaataataaagtccctagaatagttagtcc 8446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 190
Target Start/End: Complemental strand, 10158 - 10127
Alignment:
Q  159 attttgttttgtttcaaaataataaagtccct 190  Q
    ||||||||||||||||||||||||||||||||    
T  10158 attttgttttgtttcaaaataataaagtccct 10127  T

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Target: scaffold0497 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 4149 - 4183
Alignment:
Q  14 ctgttgccaagagcaggaagacaaatagcaaaact 48  Q
    ||||||||||||||||||||||||| |||||||||    
T  4149 ctgttgccaagagcaggaagacaaagagcaaaact 4183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0326 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0326
Description:

Target: scaffold0326; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 16615 - 16648
Alignment:
Q  140 acaaggcatttctttattgattttgttttgtttc 173  Q
    |||||||||||||||||||||||||||||| |||    
T  16615 acaaggcatttctttattgattttgttttgnttc 16648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 92194 - 92267
Alignment:
Q  169 gtttcaaaataataaagtccctagaatagttagtccatttaa-tggaacattaagtataacttaattgtgagac 241  Q
    |||| ||| |||||||||| ||||||||  ||||   ||||| ||||||||||||||||||||||| |||||||    
T  92194 gttttaaagtaataaagtctctagaatatctagttattttaaatggaacattaagtataacttaatcgtgagac 92267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 74
Target Start/End: Complemental strand, 39 - 11
Alignment:
Q  46 actgttggaataagccctaatagccaatc 74  Q
    |||||||||||||||||||||||||||||    
T  39 actgttggaataagccctaatagccaatc 11  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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