View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19318_high_6 (Length: 333)

Name: NF19318_high_6
Description: NF19318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19318_high_6
NF19318_high_6
[»] chr2 (4 HSPs)
chr2 (32-316)||(23348413-23348697)
chr2 (36-316)||(12742092-12742372)
chr2 (36-316)||(18354744-18355030)
chr2 (1-199)||(10328427-10328627)
[»] scaffold0596 (1 HSPs)
scaffold0596 (1-316)||(1058-1373)
[»] chr7 (3 HSPs)
chr7 (36-316)||(43070819-43071099)
chr7 (208-316)||(1262493-1262601)
chr7 (208-316)||(48849391-48849499)
[»] chr3 (7 HSPs)
chr3 (31-316)||(53972718-53973003)
chr3 (32-316)||(19881544-19881828)
chr3 (31-189)||(37982939-37983097)
chr3 (181-316)||(37982756-37982891)
chr3 (208-298)||(31685485-31685575)
chr3 (230-275)||(17682201-17682246)
chr3 (230-275)||(19766443-19766488)
[»] chr5 (4 HSPs)
chr5 (36-316)||(9044206-9044486)
chr5 (36-316)||(7472922-7473206)
chr5 (36-316)||(30441983-30442263)
chr5 (70-152)||(40163917-40163996)
[»] chr8 (3 HSPs)
chr8 (207-316)||(14677630-14677739)
chr8 (215-309)||(31100488-31100582)
chr8 (215-301)||(5658175-5658261)
[»] scaffold0035 (1 HSPs)
scaffold0035 (207-316)||(35465-35574)
[»] chr4 (1 HSPs)
chr4 (207-314)||(29862969-29863076)
[»] chr6 (3 HSPs)
chr6 (215-301)||(33045062-33045148)
chr6 (207-284)||(10092908-10092985)
chr6 (274-316)||(22000988-22001030)
[»] scaffold0045 (1 HSPs)
scaffold0045 (207-312)||(11242-11347)


Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 32 - 316
Target Start/End: Original strand, 23348413 - 23348697
Alignment:
Q  32 acacatgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 131  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23348413 acacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 23348512  T
Q  132 ataatggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtagcatcttcaacacacctggctaatacgatgccgcagacg 231  Q
     |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23348513 gtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagcatcttcaacacacctggctgatacgatgccgcagacg 23348612  T
Q  232 acaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggcaac 316  Q
    |||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23348613 acaacggcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaac 23348697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 36 - 316
Target Start/End: Complemental strand, 12742372 - 12742092
Alignment:
Q  36 atgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatataa 135  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  12742372 atgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 12742273  T
Q  136 tggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtagcatcttcaacacacctggctaatacgatgccgcagacgacaa 235  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  12742272 tggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagcatcttcaacacaccttgctgatacgatgccgcagacgacaa 12742173  T
Q  236 cgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggcaac 316  Q
    || ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  12742172 cgacgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcggcggagagagcggcaac 12742092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 36 - 316
Target Start/End: Original strand, 18354744 - 18355030
Alignment:
Q  36 atgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatataa 135  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  18354744 atgattttaaagtatcaatcaatttattaagagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 18354843  T
Q  136 tggaataacaaagttagggaaaagttacaagaacaacgatttagg------atatatatagtagcatcttcaacacacctggctaatacgatgccgcaga 229  Q
    |||||||||||||||||||||||| |||| |||||||||||||||      |||||||||||||||||||||||||||||| || |||||| ||||||||    
T  18354844 tggaataacaaagttagggaaaagctacaggaacaacgatttaggatatatatatatatagtagcatcttcaacacacctgactgatacgacgccgcaga 18354943  T
Q  230 cgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggcaac 316  Q
    | |||||  ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  18354944 caacaacagcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaac 18355030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 10328427 - 10328627
Alignment:
Q  1 atggacatattggtgtgtttgnnnnnnnnntacacatgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaata 100  Q
    |||||||||||||||||||||         ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10328427 atggacatattggtgtgtttgaaaaaaaaatacacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaata 10328526  T
Q  101 tcatcaattcacttacaaacaaaccaaaaatataatggaataacaaagttagggaaaagttacaagaacaacgatttagg--atatatatagtagcatct 198  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||  ||||||||||||||||||    
T  10328527 tcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagatacatgaacaacgatttaggatatatatatagtagcatct 10328626  T
Q  199 t 199  Q
    |    
T  10328627 t 10328627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 1373 - 1058
Alignment:
Q  1 atggacatattggtgtgtttgnnnnnnnnntacacatgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaata 100  Q
    |||||||||||||||||||||         |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1373 atggacatattggtgtgtttgaaaaaaaaatacacatgattttaaaatatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaata 1274  T
Q  101 tcatcaattcacttacaaacaaaccaaaaatataatggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtagcatcttc 200  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1273 tcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagcatcttc 1174  T
Q  201 aacacacctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcga 300  Q
    ||||||||||||| ||||||||||||||||||||||| |||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1173 aacacacctggctgatacgatgccgcagacgacaacggcgaaagtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcga 1074  T
Q  301 cagagagagcggcaac 316  Q
    | ||||||||||||||    
T  1073 cggagagagcggcaac 1058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 36 - 316
Target Start/End: Original strand, 43070819 - 43071099
Alignment:
Q  36 atgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatataa 135  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  43070819 atgattttaaagtatcaatcaatttattaagagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 43070918  T
Q  136 tggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtagcatcttcaacacacctggctaatacgatgccgcagacgacaa 235  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  43070919 tggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagcatcttcaacacacctggctgatacgatgccgcagacgacaa 43071018  T
Q  236 cgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggcaac 316  Q
    || ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  43071019 cggcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaac 43071099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 208 - 316
Target Start/End: Complemental strand, 1262601 - 1262493
Alignment:
Q  208 ctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagag 307  Q
    |||||| ||||||||||||| ||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  1262601 ctggctgatacgatgccgcatacgacaacggcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagaa 1262502  T
Q  308 agcggcaac 316  Q
    |||||||||    
T  1262501 agcggcaac 1262493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 208 - 316
Target Start/End: Original strand, 48849391 - 48849499
Alignment:
Q  208 ctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagag 307  Q
    |||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||     
T  48849391 ctggctgatacgatgccgcagacgacaacggcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgaaaggagagagctgcggcgacggagaa 48849490  T
Q  308 agcggcaac 316  Q
    |||||||||    
T  48849491 agcggcaac 48849499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 31 - 316
Target Start/End: Original strand, 53972718 - 53973003
Alignment:
Q  31 tacacatgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaa 130  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53972718 tacacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaa 53972817  T
Q  131 tataatggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtagcatcttcaacacacctggctaatacgatgccgcagac 230  Q
    | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  53972818 tgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagcatcttcaacacacttggctgatacgatgccgcagac 53972917  T
Q  231 gacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggcaac 316  Q
    ||||||| |||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  53972918 gacaacgacgaaagtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaac 53973003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 32 - 316
Target Start/End: Original strand, 19881544 - 19881828
Alignment:
Q  32 acacatgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 131  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19881544 acacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 19881643  T
Q  132 ataatggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtagcatcttcaacacacctggctaatacgatgccgcagacg 231  Q
     |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  19881644 gtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagcatcttcaacacacctggctgatacgatgccgcagacg 19881743  T
Q  232 acaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggcaac 316  Q
    |||||| ||||||||| ||| ||||||||||||||||||||||| || |||||||||||||||||| ||| ||||||||||||||    
T  19881744 acaacggcgaaggtgatgtcggaatcgagagcattggtgaagggtgaggacaggagagagctgcggtgacggagagagcggcaac 19881828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 31 - 189
Target Start/End: Complemental strand, 37983097 - 37982939
Alignment:
Q  31 tacacatgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaa 130  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37983097 tacacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaa 37982998  T
Q  131 tataatggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatata 189  Q
    | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37982997 tgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatata 37982939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 181 - 316
Target Start/End: Complemental strand, 37982891 - 37982756
Alignment:
Q  181 atatatatagtagcatcttcaacacacctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacg 280  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||    
T  37982891 atatatatattagcatcttcaacacacctggctgatacgatgccgcagacgacaacgacgaaggtgatgtcggaatcgagagcattggtgaagggcgacg 37982792  T
Q  281 acaggagagagctgcggcgacagagagagcggcaac 316  Q
    | ||||||||||||||||||| ||||||||||||||    
T  37982791 ataggagagagctgcggcgacggagagagcggcaac 37982756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 208 - 298
Target Start/End: Complemental strand, 31685575 - 31685485
Alignment:
Q  208 ctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggc 298  Q
    |||||| ||||||||||||||||||||||| ||||||||| ||| ||||||| | ||||||||||||||||||||||||||||||||||||    
T  31685575 ctggctgatacgatgccgcagacgacaacggcgaaggtgatgtcggaatcgatatcattggtgaagggcgacgacaggagagagctgcggc 31685485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 275
Target Start/End: Complemental strand, 17682246 - 17682201
Alignment:
Q  230 cgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaaggg 275  Q
    |||||||| | ||||||| ||| |||||||||||||||||||||||    
T  17682246 cgacaacggcaaaggtgatgtcggaatcgagagcattggtgaaggg 17682201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 275
Target Start/End: Complemental strand, 19766488 - 19766443
Alignment:
Q  230 cgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaaggg 275  Q
    |||||||| ||||||||| ||| ||||| |||||||||||||||||    
T  19766488 cgacaacggcgaaggtgatgtcggaatctagagcattggtgaaggg 19766443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 36 - 316
Target Start/End: Complemental strand, 9044486 - 9044206
Alignment:
Q  36 atgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatataa 135  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  9044486 atgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 9044387  T
Q  136 tggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtagcatcttcaacacacctggctaatacgatgccgcagacgacaa 235  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||    
T  9044386 tggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagcatcttcaacacacttggctgatacgatgctgcagacgacaa 9044287  T
Q  236 cgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggcaac 316  Q
    || ||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9044286 cgacgaaggtgatgtcgaaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaac 9044206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 36 - 316
Target Start/End: Original strand, 7472922 - 7473206
Alignment:
Q  36 atgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatataa 135  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7472922 atgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 7473021  T
Q  136 tggaataacaaagttagggaaaagttacaagaacaacgatttagg----atatatatagtagcatcttcaacacacctggctaatacgatgccgcagacg 231  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7473022 tggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatatatagtagcatcttcaacacacctggctgatacgatgccgcagacg 7473121  T
Q  232 acaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggcaac 316  Q
    |||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  7473122 acaacggcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagagagcgacaac 7473206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 36 - 316
Target Start/End: Original strand, 30441983 - 30442263
Alignment:
Q  36 atgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatataa 135  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  30441983 atgattttaaagtatcaatcaatttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 30442082  T
Q  136 tggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtagcatcttcaacacacctggctaatacgatgccgcagacgacaa 235  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||    
T  30442083 tggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagcatcttcaacacatatggctgatacgatgccgcagacgacaa 30442182  T
Q  236 cgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggcaac 316  Q
    || | ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  30442183 cggccaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcaacggagagagcggcaac 30442263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 152
Target Start/End: Complemental strand, 40163996 - 40163917
Alignment:
Q  70 ataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatataatggaataacaaagttag 152  Q
    ||||||||| || ||||||||||| |||||||||   |||||| | ||||||||| ||| |||||||||||||||||||||||    
T  40163996 ataatacataattgtaaaatctatgtaaatatca---attcacatccaaacaaactaaatatataatggaataacaaagttag 40163917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 207 - 316
Target Start/End: Original strand, 14677630 - 14677739
Alignment:
Q  207 cctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagaga 306  Q
    ||||||| ||||||||| ||||||||||||| ||||||||| ||| ||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||    
T  14677630 cctggctgatacgatgctgcagacgacaacggcgaaggtgatgtcggaatcgagagcattggtgaagggtgacgataggagagagctgcggcgacggaga 14677729  T
Q  307 gagcggcaac 316  Q
    ||||||||||    
T  14677730 gagcggcaac 14677739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 215 - 309
Target Start/End: Original strand, 31100488 - 31100582
Alignment:
Q  215 atacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagag 309  Q
    |||||||||| |||||||||||| ||||||||| ||  ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  31100488 atacgatgccacagacgacaacggcgaaggtgatgttggaatcgagagcattggtgaagggcgacgacaggagagagttgcggcgacggagagag 31100582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 215 - 301
Target Start/End: Complemental strand, 5658261 - 5658175
Alignment:
Q  215 atacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgac 301  Q
    |||||||||| |||||||||||| ||||||||| ||  ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5658261 atacgatgccacagacgacaacggcgaaggtgatgttggaatcaagagcattggtgaagggcgacgacaggagagagctgcggcgac 5658175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 207 - 316
Target Start/End: Complemental strand, 35574 - 35465
Alignment:
Q  207 cctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagaga 306  Q
    ||||||| ||||||||||||| ||||||||| ||||||||| ||||||||||||||||| ||| || |||||||||||||||||||||||||||| ||||    
T  35574 cctggctgatacgatgccgcaaacgacaacggcgaaggtgatgtcagaatcgagagcatcggtcaaaggcgacgacaggagagagctgcggcgacggaga 35475  T
Q  307 gagcggcaac 316  Q
    |||| |||||    
T  35474 gagcagcaac 35465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 207 - 314
Target Start/End: Original strand, 29862969 - 29863076
Alignment:
Q  207 cctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagaga 306  Q
    ||||||| ||||||||||||||| ||||||| | || |||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  29862969 cctggctgatacgatgccgcagatgacaacggcaaaagtgatgtcggaatcgagagcatcggtgaagggcgacgacaggagagagctgcggcgacggaga 29863068  T
Q  307 gagcggca 314  Q
    ||||||||    
T  29863069 gagcggca 29863076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 215 - 301
Target Start/End: Original strand, 33045062 - 33045148
Alignment:
Q  215 atacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgac 301  Q
    ||||||||||||||||||||||| ||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33045062 atacgatgccgcagacgacaacgacgaaggtgatgttggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgac 33045148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 10092985 - 10092908
Alignment:
Q  207 cctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacag 284  Q
    ||||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||    
T  10092985 cctggctgatacgatgccgcagacgacaacgacgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacag 10092908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 274 - 316
Target Start/End: Original strand, 22000988 - 22001030
Alignment:
Q  274 ggcgacgacaggagagagctgcggcgacagagagagcggcaac 316  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  22000988 ggcgacgacaggagagagctgcggcgacggagagagcggcaac 22001030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 207 - 312
Target Start/End: Original strand, 11242 - 11347
Alignment:
Q  207 cctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagaga 306  Q
    ||||||| || | |||||||||||||||||| ||||||||| ||| || |||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  11242 cctggctgatgcaatgccgcagacgacaacggcgaaggtgatgtcggattcgagagcattggtgaagggcgacgacaagagagagctgcggcgacggaga 11341  T
Q  307 gagcgg 312  Q
    ||||||    
T  11342 gagcgg 11347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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