View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19318_low_2 (Length: 362)
Name: NF19318_low_2
Description: NF19318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19318_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 333
Target Start/End: Original strand, 26570099 - 26570426
Alignment:
| Q |
9 |
aggagcagagataaatagcaatagatgttctagtgagcatagggttactgcttctgcttcatttaataattcaaacataggtgaagagttattgtctttg |
108 |
Q |
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|||| |||||||||||||||||||||||||||||||| | || || || ||||||||||| || |||||| ||||||||||||||||||||||||||||| |
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| T |
26570099 |
aggatcagagataaatagcaatagatgttctagtgagtaaagagtgaccgcttctgcttctttcaataatccaaacataggtgaagagttattgtctttg |
26570198 |
T |
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| Q |
109 |
tttgtggaagaatcaatcaactcattcttcattgttttcaaatttaccaacgcctttcgaatttgcttcttcatgttcttcctaaaagccatgtatttta |
208 |
Q |
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| T |
26570199 |
tttgaggaagaatcaatcgactcattcttcattgttttcaaatttaccaacgcctttcgaatttgcttcttcatgttcttcctaaaagccatgtatttta |
26570298 |
T |
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| Q |
209 |
caccctcaactgtgaatccagtttcaattcct---ttccttctaatgactgactgtagttcatgcatgttttcctttgatagagaaaggaaatccttggc |
305 |
Q |
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|||||||||||||||||||||||||||||||| || ||||| |||||||| |||||||||| |||||||||||||||||| |||||||||||||| || |
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| T |
26570299 |
caccctcaactgtgaatccagtttcaattcctctctttcttctgatgactgattgtagttcatacatgttttcctttgatagcgaaaggaaatccttagc |
26570398 |
T |
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| Q |
306 |
gatactgcagatatccaatatcctaagt |
333 |
Q |
| |
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||||| ||||||||||| || |||||| |
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| T |
26570399 |
tatactacagatatccaagattctaagt |
26570426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 15 - 332
Target Start/End: Original strand, 26567370 - 26567693
Alignment:
| Q |
15 |
agagataaatagcaatagatgttctagtgagcatagggttactgcttctgcttcatttaataattcaaacataggtgaagagttattgtc---tttgttt |
111 |
Q |
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||||||||||||||| | ||| |||||||||| | || ||| ||||||||| || || ||| ||| |||||||||||| |||||||| ||||||| |
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| T |
26567370 |
agagataaatagcaacaaatgctctagtgagctcacagtgacttcttctgcttttttcaagaatccaagcataggtgaagaattattgtcctttttgttt |
26567469 |
T |
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| Q |
112 |
gtggaagaatcaatcaactcattcttcattgttttcaaatttaccaacgcctttcgaatttgcttcttcatgttcttcctaaaagccatgtattttacac |
211 |
Q |
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||| ||| |||||||||| | ||||||| |||||| |||| || |||||| ||||||||||||| || ||||||| ||||||| |||||||||| |
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| T |
26567470 |
aaggacgaagcaatcaactcctccttcatttctttcaattttagaaaggccttttgaatttgcttctttgtggtcttccttaaagccaaatattttacac |
26567569 |
T |
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| Q |
212 |
cctcaactgtgaatccagtttcaattcct---ttccttctaatgactgactgtagttcatgcatgttttcctttgatagagaaaggaaatccttggcgat |
308 |
Q |
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||||||||| ||||||||||||| |||| || ||||| ||||| ||||||||||| || ||||||||||||||||| |||||| |||| |||| | |
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| T |
26567570 |
cctcaactgctaatccagtttcaactcctctctttcttctgatgaccgactgtagttcttgaatgttttcctttgatagcgaaaggcaatctttggttgt |
26567669 |
T |
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| Q |
309 |
actgcagatatccaatatcctaag |
332 |
Q |
| |
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||||||||||||||||| ||||| |
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| T |
26567670 |
gctgcagatatccaatattctaag |
26567693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 279
Target Start/End: Original strand, 44690443 - 44690516
Alignment:
| Q |
209 |
caccctcaactgtgaatccagtttcaattcct---ttccttctaatgactgactgtagttcatgcatgttttcc |
279 |
Q |
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||||||||||||||||||||||||||| |||| || ||||| ||||| |||||||||| || ||||||||| |
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| T |
44690443 |
caccctcaactgtgaatccagtttcaactcctctctttcttctgatgaccaactgtagttcttgaatgttttcc |
44690516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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