View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19319_high_1 (Length: 623)
Name: NF19319_high_1
Description: NF19319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19319_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 25 - 611
Target Start/End: Complemental strand, 3300369 - 3299776
Alignment:
| Q |
25 |
tcatcaaatcaaaaccactcaccttttattacccctcacgctcaaatctcatctaactaatnnnnnnncaa-------ccaatgacatactcaaaacaaa |
117 |
Q |
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| T |
3300369 |
tcatcaaatcaaaaccactcaccttttattactcctcacactcaaatctcatttaactaataaaaaaaaaaaaaaaaaccaatgacatactcaaaacaaa |
3300270 |
T |
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| Q |
118 |
acacccaaaactacctcgttataccacgatgttgtgtcttcctattatggatagtgtttctagcattgtgtataacggcgttgtttttcctatggccatt |
217 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3300269 |
acacccaaaattaccttgttataccacgatgttgtgtcttcctattatggatagtggttctagcattgtgtataacggcgttgtttttcctatggccatt |
3300170 |
T |
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| Q |
218 |
aaacccagaaattgaaatggaaagtttaatagtaaaacgagcaaaagttcacccgttaccaccgttgagtgttgatgtgtcattatcggtaaccgttaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3300169 |
aaacccagaaattgaaatggaaagtttaatagtaaaacgagcaaaagttcacccgttaccaccgttgagtgttgatgtgtcattatcggtaaccgttaaa |
3300070 |
T |
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| Q |
318 |
attcacaacaaggttttgtattggatgcagctagctgaagttgacgtcggcatcaagtatcgtgggcataaacttggtcacgtggaaacgaggggttggc |
417 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3300069 |
attcacaacaaggttttgtattggatggagctagctgaagttgacgtcggcatcaagtatcgtgggcataaacttggtcacgtggaaacgaggggttggc |
3299970 |
T |
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| Q |
418 |
acgtgaagggatggggttcagaacatgtgtttggtgagcttgagtttgggggacttccttctccagatgtggcacatttgatgcaggatctggctaagaa |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3299969 |
acgtgaagggatggggttcagaacatgtgtttggtgagcttgagtttgggggacttccttctccagatgtggcacatttgatgcaggatctggctaagaa |
3299870 |
T |
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| Q |
518 |
gagggttcattttcacactgctgttggagttgtgggaaaccttggactttttgcctttcacttccctaaaattttcaaggtattatagtattat |
611 |
Q |
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| T |
3299869 |
gagggttcattttcacactgctgttggagttgtgggaaaccttggactttttgcctttcacttccctaaaattttcaaggtattatagtattat |
3299776 |
T |
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