View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19319_high_11 (Length: 244)
Name: NF19319_high_11
Description: NF19319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19319_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 225
Target Start/End: Complemental strand, 34031735 - 34031524
Alignment:
| Q |
14 |
aagcataggagcagtggaagcattaaaagatcaacttggtgtatgcaggtggaactatgcttttagatcacttcatcaacatgctaagaacaatattaga |
113 |
Q |
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| T |
34031735 |
aagcataggagcagtggaagcattaaaagaccaacttggtgtatgcaggtggaactatgcttttagatcacttcatcaacatgctaagaacaatattaga |
34031636 |
T |
|
| Q |
114 |
tcatactctcaagccaagaaattgtcatctgcttcatctgctgctgtttcgaataaggtgaagagaagcaaggaagaatctatgaggaaagtcatggact |
213 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34031635 |
tcatactctcaagccaagaaattgtcctctgcttcatctgctgctgtttcgaataaggtgaagagaagcaaggaagaatctatgaggaaagtcattgact |
34031536 |
T |
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| Q |
214 |
tgaattgctggg |
225 |
Q |
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|||||||||||| |
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| T |
34031535 |
tgaattgctggg |
34031524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 14 - 225
Target Start/End: Complemental strand, 34029800 - 34029589
Alignment:
| Q |
14 |
aagcataggagcagtggaagcattaaaagatcaacttggtgtatgcaggtggaactatgcttttagatcacttcatcaacatgctaagaacaatattaga |
113 |
Q |
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||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34029800 |
aagcataggagcagtggaagctttaaaagaccaacttggtgtatgcaggtggaactatgcttttaggtcacttcatcaacatgctaagaacaatattaga |
34029701 |
T |
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| Q |
114 |
tcatactctcaagccaagaaattgtcatctgcttcatctgctgctgtttcgaataaggtgaagagaagcaaggaagaatctatgaggaaagtcatggact |
213 |
Q |
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| T |
34029700 |
tcatacactcaggctaagaaattgtcatctgcttcttctgctgctgtttccaacaaggtgaaaagaaccaaggaagaatctatgaagaaagtcatggact |
34029601 |
T |
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| Q |
214 |
tgaattgctggg |
225 |
Q |
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||||||| |||| |
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| T |
34029600 |
tgaattgttggg |
34029589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 34026872 - 34026666
Alignment:
| Q |
14 |
aagcataggagcagtggaagcattaaaagatcaacttggtgtatgcaggtggaactatgcttttagatcacttcatcaacatgctaagaacaatattaga |
113 |
Q |
| |
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||||| ||||| |||||| || |||||||| |||||||||||||||||||||||| || |||||||||| ||||||| |||||||||| |||||| ||| |
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| T |
34026872 |
aagcacaggaggagtggaggccttaaaagaccaacttggtgtatgcaggtggaaccattcttttagatcctttcatcagcatgctaagagcaatatcaga |
34026773 |
T |
|
| Q |
114 |
tcatactctcaagccaagaaattgtcatctgcttcatctgctgctgtttcgaataaggtgaagagaagcaaggaagaatctatgaggaaagtcatggact |
213 |
Q |
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|||||| || | ||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34026772 |
tcatacactaaggccaagaaattgtcatctgcttcttctgctgctgtttccaacaaggtgaagagaagcaaggaagaatctatgaggaaagtcattgact |
34026673 |
T |
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| Q |
214 |
tgaattg |
220 |
Q |
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||||||| |
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| T |
34026672 |
tgaattg |
34026666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 34034736 - 34034679
Alignment:
| Q |
168 |
aaggtgaagagaagcaaggaagaatctatgaggaaagtcatggacttgaattgctggg |
225 |
Q |
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|||| |||||||| ||||||||||||||||| ||||||||||||| ||||||| |||| |
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| T |
34034736 |
aaggggaagagaaacaaggaagaatctatgaagaaagtcatggacctgaattgttggg |
34034679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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