View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19319_high_15 (Length: 225)

Name: NF19319_high_15
Description: NF19319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19319_high_15
NF19319_high_15
[»] chr8 (2 HSPs)
chr8 (116-208)||(35416235-35416327)
chr8 (18-106)||(35415858-35415946)
[»] chr7 (1 HSPs)
chr7 (67-111)||(20114913-20114957)


Alignment Details
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 116 - 208
Target Start/End: Original strand, 35416235 - 35416327
Alignment:
Q  116 ccacaaggggtttggggtggcgctgctgtgaaaaccacgcacggaccacgaccaccaacaaaaagtctaaattgtgacaagcttggtttggat 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35416235 ccacaaggggtttggggtggcgctgctgtgaaaaccacgcacggaccacgaccaccaacaaaaagtctaaattgtgacaagcttggtttggat 35416327  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 35415858 - 35415946
Alignment:
Q  18 acaagcagactacgaacgagagaaactggaatcgtatatacaggaaaccatagcagccaccaaatcgcggggacggtggcaccagaatc 106  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||| ||||    
T  35415858 acaagcagactacgaacgagagaaactggaatcgtatttacaggaaaccatagtagccaccaaatcgtggggacggtggcaccataatc 35415946  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 20114913 - 20114957
Alignment:
Q  67 atagcagccaccaaatcgcggggacggtggcaccagaatcctaac 111  Q
    |||| |||||||||||||||| ||||||||||||  |||||||||    
T  20114913 atagtagccaccaaatcgcggagacggtggcaccgaaatcctaac 20114957  T

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