View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19319_high_3 (Length: 467)
Name: NF19319_high_3
Description: NF19319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19319_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 28461735 - 28462161
Alignment:
| Q |
1 |
atgcattatgaacactagaagtatagatagatattaaagcaaattaaattaaatataataagaaatgacagataacgactatattatgctttgttttatt |
100 |
Q |
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| T |
28461735 |
atgcattatgaacactagaagtatagatagatattaaagcaaattaaattaaatataataagaaatgacagataacgactatattatgctttgttttatt |
28461834 |
T |
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| Q |
101 |
gtcaaaaaagcaatatgcttctttagattattannnnnnnccgcccacatacaatgctgaaaaccgtgaaatccttaactacttatatcacaataattga |
200 |
Q |
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| T |
28461835 |
gtcaaaaaagcaatattcttctttagattattatttttt-ccgcccacatacaatgctgaaaaccgtgaaatccttaactacttatatcacaataattga |
28461933 |
T |
|
| Q |
201 |
gttaggttgcaaatgcctaataggtgaatagcatgtaaaaaatgacaattattgga-------atctaaacatgactcctttcaaggttttttatgtgac |
293 |
Q |
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| T |
28461934 |
gttaggttgcaaatgactaataggtgaatagcatgtaaaaaatgacaattattggattctggaatctaaacatgactcctttcaaggttttttatgtgac |
28462033 |
T |
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| Q |
294 |
aaagactgctttcaagttaaacaactaattttcacacatgtataaaatatataagtttactcgtagaaggtaaatgaactcacaatgatggtggatatgg |
393 |
Q |
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| T |
28462034 |
aaagactgctttcaagttaaacaactaattttcacacatgtataaaatatataagtttactcgtagaaggtaaatgaactcacaatgatggtggatatgg |
28462133 |
T |
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| Q |
394 |
aagtcggaatccgaggaggtggagatga |
421 |
Q |
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| T |
28462134 |
aagtcggaatccgaggaggtggagatga |
28462161 |
T |
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