View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19319_high_7 (Length: 352)
Name: NF19319_high_7
Description: NF19319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19319_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 11 - 336
Target Start/End: Original strand, 42447540 - 42447865
Alignment:
| Q |
11 |
atcatcaaaacaccagaagttccacaagaattagatgcccatacgagcactaatctcttgttaatcccagtggctcccagcgagcgaaagtcctttctga |
110 |
Q |
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| T |
42447540 |
atcatcaaaacaccagaagttccacaagaattagatgcccatacgagcactattctctcgttaatcccagtagctcccagcgagcgaaagtcctttctga |
42447639 |
T |
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| Q |
111 |
actagcaagtttttcacatgcacaacacctgcttatagctccttgcaagtcaaagtcattccctcacgttcttcacgaaccattaaagctctcttgcgag |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42447640 |
actagcaagtttttcacatgcacaacacctgcttatagctccttgcaagtcaaagtcattccctcacgttcttcacgaaccattaaagctctcttgcgag |
42447739 |
T |
|
| Q |
211 |
caccacaatcttaaaagtcattttcacaaattatgagttcctcgcgagcatcaataccctaagaggttcatcacgaactatagactctcttcgagcaaca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42447740 |
caccacaatcttaaaagtcattttcacaaattatgagttcctcgcgagcatcaataccctaagaggttcatcacgaactatagactctcttcgagcaaca |
42447839 |
T |
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| Q |
311 |
tattcttaaaattgctagctaactac |
336 |
Q |
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|||||||||||||||||||||||||| |
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| T |
42447840 |
tattcttaaaattgctagctaactac |
42447865 |
T |
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