View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19319_high_9 (Length: 319)
Name: NF19319_high_9
Description: NF19319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19319_high_9 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 21 - 319
Target Start/End: Original strand, 42667032 - 42667330
Alignment:
| Q |
21 |
gaacggaggtggaggaggaggcggtggaggtattgagttcaatggcgactcattaccagtaatcacagaaaaatcctcatcctttgtttttgacataatc |
120 |
Q |
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| T |
42667032 |
gaacggaggtggaggaggaggcggtggaggtattgagttcaatggcgactcattaccagtaatcacagaaaaatcctcatcctttgtttttgacataatc |
42667131 |
T |
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| Q |
121 |
atagctgaaacatgatgttgtgacggcgaaacagagttaagtttcttctgtttgtttttcttagaatagaacaaatcaggaaaaggagaagaataagaag |
220 |
Q |
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| T |
42667132 |
atagctgaaacatgattttgtgacggcgaaacagagttaagtttcttctgtttgtttttcttagaatagaacaaatcaggaaaaggagaagaataagaag |
42667231 |
T |
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| Q |
221 |
gcacagtagtagcaggttcagaattcagaatgctctgaaaattttcaacgcttttatgtctatgctgcttcttcattggaggttcagaatttataatgt |
319 |
Q |
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| T |
42667232 |
gcacagtagtagcaggttcagaattcagaatgctctgaaaattttcaacgcttttatgtctatgctgcttcttcattggaggttcagaatttataatgt |
42667330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 234 - 319
Target Start/End: Original strand, 42667311 - 42667399
Alignment:
| Q |
234 |
aggttcagaattcagaatgctctgaaaattttcaacgcttttat---gtctatgctgcttcttcattggaggttcagaatttataatgt |
319 |
Q |
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| T |
42667311 |
aggttcagaatttataatgttctgaaaattttcaacgcttttattatgtctatgcttcttcttcattggaggttcagaatttataatgt |
42667399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 234 - 293
Target Start/End: Original strand, 42667380 - 42667439
Alignment:
| Q |
234 |
aggttcagaattcagaatgctctgaaaattttcaacgcttttatgtctatgctgcttctt |
293 |
Q |
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| T |
42667380 |
aggttcagaatttataatgttctgaaaattttcaacgcttttatgtctatgcttcttctt |
42667439 |
T |
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