View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19319_low_2 (Length: 593)
Name: NF19319_low_2
Description: NF19319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19319_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 567; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 10 - 580
Target Start/End: Original strand, 43533079 - 43533649
Alignment:
| Q |
10 |
catcatcactttcaccttcatcttcttcccttgaatcattctattttcttgatgatcctcttctaagccctgccactccacttagattctcaggtgtccc |
109 |
Q |
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| T |
43533079 |
catcatcactttcaccttcatcttcttcccttgaatcattctattttcttgatgatcctcttctaagccctgccactccacttagattctcaggtgtccc |
43533178 |
T |
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| Q |
110 |
attttcttgggaacatttacctggaattcccaagaaacacaataattccaagaaaaatcataaatcatccatgaaactattaccattaccccctcctact |
209 |
Q |
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| T |
43533179 |
attttcttgggaacatttacctggaattcccaagaaacacaataattccaagaaaaatcataaatcatccatgaaactattaccattaccccctcctact |
43533278 |
T |
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| Q |
210 |
attactacaagtactaccacacactcttctaaaaagcttaatcatgaagataccaagattaggaagaagaattcaattcaaagggatgatcctttctttg |
309 |
Q |
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| T |
43533279 |
attactacaagtactaccacacactcttctaaaaagcttaatcatgaagataccaagattaggaagaagaattcaattcaaagggatgatcctttctttg |
43533378 |
T |
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| Q |
310 |
ctgcaatggttaaatgctcaaaggatgatgatgatcatgaagaaacaattggcaatttatggactaatggcgataaggtttcaaggagtattagtgatcg |
409 |
Q |
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| T |
43533379 |
ctgcaatggttaaatgctcaaaggatgatgatgatcatgaagaaacaattggcaatttatggactaatggagataaggtttcaaggagtattagtgatcg |
43533478 |
T |
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| Q |
410 |
ttttggatttattagcctttatggttcttgcaagagaacttgtgcagtttctgaatctttagtttaccttccaagcacaagaagaagcacttatcaaaaa |
509 |
Q |
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| T |
43533479 |
ttttggatttattagcctttatggttcttgcaagagaacttgtgcagtttctgaatctttagtttaccttccaagcacaagaagaagcacttatcaaaaa |
43533578 |
T |
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| Q |
510 |
gttaatggcaggtccctttgagatttttccaatcagtgatcccaaaatctacttgtgttcatgttgttaat |
580 |
Q |
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| T |
43533579 |
gttaatggcaggtccctttgagatttttccaatcagtgatcccaaaatctacttgtgttcatgttgttaat |
43533649 |
T |
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