View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19319_low_3 (Length: 586)
Name: NF19319_low_3
Description: NF19319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19319_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 10 - 572
Target Start/End: Complemental strand, 2616275 - 2615713
Alignment:
| Q |
10 |
aagaatatgtgatatgttccaatgttgataggcgttggtatttataaagcccttgaagttaaatttaaaatagcaattcaacctcaatctacttgaaaag |
109 |
Q |
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| T |
2616275 |
aagaatatgtgatatgttccaatgttgataggcgttggtatttataaagcccttgaagttaaatttaaaatagcaattcaacctcaatctacttgaaaag |
2616176 |
T |
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| Q |
110 |
tcactttaaataaattggatgtgaccacttagcctatgtttggactttgcatatacaacttcagtaccatttcgcaatgcaagttggttgtgacctttga |
209 |
Q |
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| T |
2616175 |
tcactttaaataaattggatgtgaccacttagcctatgtttggactttgcatatacaacttcagtaccatttcgcaatgcaagttggttgtgacctttga |
2616076 |
T |
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| Q |
210 |
gcagcgaatacatgtagcaatgaaatgtatacaagttttaagaccagttggtgttgtcaaaaccagccttattactcctagagcaccaaattgttcaatc |
309 |
Q |
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| T |
2616075 |
gcagcgaatacatgtagcaatgaaatgtatacaagttttaagaccagttggtgttgtcaaaaccagccttattactcctagagcaccaaattgttcaatc |
2615976 |
T |
|
| Q |
310 |
attttactcatatatgcttatttcaaatatcatcaagcatgtttcccctttagttgaatatattgtggacctctcttgtcacctctcttatttttccatc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2615975 |
attttactcatatatgcttatttcaaatatcatcaagcatatttcccctttagttgaatatattgtggacctctcttgtcacctctcttatttttccatc |
2615876 |
T |
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| Q |
410 |
attttaattgttcattgaaccccgttattgttctcaaggggtatgagagccctgatttggcttgttgggtaagagggaatgaatcctgtgttgaaacatc |
509 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2615875 |
attttaattgttcattgaaccccgttattgttctcaaggggtatgagagccctgatttggcttgttgggtaagagggaatgaatcctgtgttgaaacatg |
2615776 |
T |
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| Q |
510 |
ttataggagatagactcacacttatgggagagattgttgggttttaagtccgagtgtggttaa |
572 |
Q |
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| T |
2615775 |
ttataggagatagactcacacttatgggagagattgttaggtttcaagttcgagtgtggttaa |
2615713 |
T |
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