View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19319_low_4 (Length: 502)

Name: NF19319_low_4
Description: NF19319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19319_low_4
NF19319_low_4
[»] chr6 (8 HSPs)
chr6 (1-478)||(14970447-14970925)
chr6 (228-361)||(7682098-7682231)
chr6 (217-361)||(10906214-10906358)
chr6 (217-470)||(9191420-9191667)
chr6 (228-361)||(19546838-19546971)
chr6 (268-478)||(8403328-8403544)
chr6 (386-470)||(14979915-14979998)
chr6 (386-470)||(14989027-14989110)
[»] chr7 (9 HSPs)
chr7 (217-483)||(20026350-20026617)
chr7 (219-483)||(13477146-13477411)
chr7 (242-459)||(4531278-4531495)
chr7 (243-340)||(22614613-22614709)
chr7 (270-361)||(37945357-37945448)
chr7 (384-470)||(15866928-15867013)
chr7 (249-340)||(11655623-11655714)
chr7 (384-470)||(16060893-16060978)
chr7 (384-470)||(48377196-48377279)
[»] chr2 (4 HSPs)
chr2 (228-483)||(24786523-24786779)
chr2 (229-463)||(23655952-23656186)
chr2 (324-470)||(44586047-44586193)
chr2 (228-470)||(18986923-18987165)
[»] chr3 (16 HSPs)
chr3 (228-470)||(14481119-14481360)
chr3 (228-470)||(17791265-17791507)
chr3 (228-470)||(19099705-19099947)
chr3 (221-470)||(5943447-5943696)
chr3 (50-215)||(25785206-25785370)
chr3 (228-429)||(16359075-16359276)
chr3 (228-464)||(22924251-22924487)
chr3 (228-456)||(19185256-19185485)
chr3 (232-432)||(21975620-21975820)
chr3 (232-432)||(21998051-21998251)
chr3 (384-470)||(16642677-16642762)
chr3 (386-470)||(4712452-4712535)
chr3 (232-432)||(22160215-22160415)
chr3 (228-298)||(27870009-27870079)
chr3 (384-459)||(14062431-14062505)
chr3 (384-432)||(14054702-14054749)
[»] chr5 (4 HSPs)
chr5 (228-470)||(24831518-24831759)
chr5 (272-361)||(13937416-13937505)
chr5 (228-361)||(23960405-23960538)
chr5 (228-361)||(24759260-24759393)
[»] scaffold0737 (1 HSPs)
scaffold0737 (228-470)||(3161-3403)
[»] chr4 (9 HSPs)
chr4 (251-483)||(11097910-11098144)
chr4 (242-463)||(11556315-11556536)
chr4 (249-407)||(18220309-18220467)
chr4 (228-429)||(15872344-15872545)
chr4 (228-361)||(18556414-18556547)
chr4 (228-429)||(15889936-15890137)
chr4 (403-463)||(18231148-18231208)
chr4 (228-429)||(12229315-12229516)
chr4 (284-361)||(16284583-16284660)
[»] chr8 (2 HSPs)
chr8 (228-470)||(29294244-29294486)
chr8 (384-470)||(23658914-23658999)
[»] chr1 (3 HSPs)
chr1 (327-463)||(1566682-1566818)
chr1 (384-470)||(13881907-13881992)
chr1 (384-469)||(51626644-51626728)
[»] scaffold0048 (3 HSPs)
scaffold0048 (1-206)||(53131-53335)
scaffold0048 (217-321)||(52627-52728)
scaffold0048 (265-314)||(87139-87188)
[»] scaffold1001 (1 HSPs)
scaffold1001 (214-335)||(1542-1663)
[»] scaffold0094 (1 HSPs)
scaffold0094 (228-361)||(4200-4333)
[»] scaffold0385 (1 HSPs)
scaffold0385 (228-456)||(14614-14843)
[»] scaffold0319 (1 HSPs)
scaffold0319 (384-470)||(13220-13305)
[»] scaffold0118 (1 HSPs)
scaffold0118 (267-432)||(10513-10679)
[»] scaffold0003 (1 HSPs)
scaffold0003 (384-470)||(131162-131247)
[»] scaffold0166 (1 HSPs)
scaffold0166 (228-361)||(1754-1887)
[»] scaffold0290 (1 HSPs)
scaffold0290 (244-298)||(13706-13760)
[»] scaffold0091 (1 HSPs)
scaffold0091 (384-470)||(29438-29523)
[»] scaffold0218 (1 HSPs)
scaffold0218 (384-459)||(14768-14842)
[»] scaffold0145 (1 HSPs)
scaffold0145 (284-361)||(13057-13134)


Alignment Details
Target: chr6 (Bit Score: 423; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Complemental strand, 14970925 - 14970447
Alignment:
Q  1 ttacctcaggataatagcgattgtaaaacataaaccaatgatatcgttgtaagtgaatttaatgatttttaaaagatggacggaccgtaggcagtgaaaa 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14970925 ttacctcaggataatagcgattctaaaacataaaccaatgatatcgttgtaagtgaatttaatgatttttaaaagatggacagaccgtaggcagtgaaaa 14970826  T
Q  101 acaatgataagatgaaagacaagggagatgtttaattctagatggctaggataaatataagtcccccgaattagagacgaatttaaacgctgaagtagtt 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14970825 acaatgataagatgaaagacaagggagatgtttaattcaagatggctaggataaatataagtcccccaaattagagacgaatttaaacgctgaagtagtt 14970726  T
Q  201 aagtagcaagagaagaataagagattttagttataaggttagacgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgc 300  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||| || ||||||||||||||||||     
T  14970725 aagtagcaagagaagtataagagattttagttataaggttagacgatgataataatgaccgatgtcaagagaataaagccatgaattataatggagtcgt 14970626  T
Q  301 agtgaggaaagttgttgaagtcaaaattaatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatga 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14970625 agtgaggaaagttgttgaagtcaaaattaatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatga 14970526  T
Q  401 ctacgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtt-atgacgatg 478  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  14970525 ctacgaacatgagaacaaagtaataagatatacagtggttttattgagaagaataagtatgaaggagttaatgacgatg 14970447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 228 - 361
Target Start/End: Original strand, 7682098 - 7682231
Alignment:
Q  228 tagttataaggttagacgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagttgttgaagtcaaaat 327  Q
    ||||||||| | | |||| | ||||||||||| ||| ||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||    
T  7682098 tagttataatgattgacgttaataataatgactagtatcgagagaataaaaccttgaattataatgtagtcttagtgaggaaagttgttgaagtcaaaat 7682197  T
Q  328 taatgatagggtgagataataactctaaattaga 361  Q
    |||||||| ||| | ||| ||||| |||||||||    
T  7682198 taatgataaggtaacatagtaactttaaattaga 7682231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 217 - 361
Target Start/End: Original strand, 10906214 - 10906358
Alignment:
Q  217 ataagagattttagttataaggttagacgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagttgtt 316  Q
    ||||||||| ||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||| |||||||||  |||||| ||||||| |    
T  10906214 ataagagatattagttataaggttagacgatgataataacgatcagtatcgagagaataaaaccttgaattaaaatggagtcttagtgagtaaagttgct 10906313  T
Q  317 gaagtcaaaattaatgatagggtgagataataactctaaattaga 361  Q
    || ||  |   |||||||| ||||| || |||||| |||||||||    
T  10906314 gacgttgagggtaatgataaggtgatatgataactttaaattaga 10906358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 217 - 470
Target Start/End: Complemental strand, 9191667 - 9191420
Alignment:
Q  217 ataagagattttagttataaggttagacgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagttgtt 316  Q
    ||||||||| |||||||||||||||| ||||||||||||  ||| || ||||||||| ||||||||||||||||| | ||||| |||||||||||||| |    
T  9191667 ataagagatattagttataaggttagtcgatgataataacaaccggtatcgagagaacaaaaccttgaattataacgaagtcgtagtgaggaaagttgct 9191568  T
Q  317 gaagtcaaaattaatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacgaacatgagaac 416  Q
    ||||       | |||||| |||||||| |||| | |||||||||   || ||||||  ||| |||||| ||||| ||| ||| | |||||  |||||||    
T  9191567 gaag------gtgatgataaggtgagattataattttaaattagaatgaagttaagattaggagaatggtcgatgtatacatggcgacgaaagtgagaac 9191474  T
Q  417 aaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtta 470  Q
     | ||||||||||||| | |   |||| ||||| ||||||||||||| ||||||    
T  9191473 gaggtaataagatataaagtaactttaatgagaggaataagtatgaaagagtta 9191420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 228 - 361
Target Start/End: Original strand, 19546838 - 19546971
Alignment:
Q  228 tagttataaggttagacgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagttgttgaagtcaaaat 327  Q
    ||||||||| ||| |||||| |||||||||||  || |||||||||| |||||||||||||||||| ||||   |||||| |||||  ||||||| |||     
T  19546838 tagttataatgtttgacgataataataatgactggtatcgagagaatgaaaccttgaattataatgaagtcttggtgagggaagtttatgaagtcgaaag 19546937  T
Q  328 taatgatagggtgagataataactctaaattaga 361  Q
    |||||||   ||| |||||||||| |||||||||    
T  19546938 taatgattaagtgcgataataactttaaattaga 19546971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 268 - 478
Target Start/End: Original strand, 8403328 - 8403544
Alignment:
Q  268 agagaataaaaccttgaattataatggagtcgcagtgaggaaagttgttgaagtcaaaattaatgatagggtgagataataactctaaattagaccaaat 367  Q
    ||||||||||| |||||||||| ||| || |  |||||||||||||  ||||||||||| || |||||  |||||||||||||| ||||||||    ||     
T  8403328 agagaataaaatcttgaattatgatgaagccttagtgaggaaagtttctgaagtcaaaagtactgataaagtgagataataactttaaattaggattaag 8403427  T
Q  368 ttaagacaaggggaatggacgatgcatagatgactacgaacatgagaaca----aagtaataagatatacaatggtttt-attgagaagaataagtatga 462  Q
    ||||||  ||| |||| | ||||| ||||||||| |||||  ||||||||    || |||||||||||| | | ||||| | |||||||||||| || ||    
T  8403428 ttaagattaggagaatagtcgatgtatagatgacgacgaatgtgagaacaagataattaataagatataaagtagttttaaatgagaagaataattacga 8403527  T
Q  463 aggagtt-atgacgatg 478  Q
    | ||||| |||||||||    
T  8403528 aagagttaatgacgatg 8403544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 386 - 470
Target Start/End: Original strand, 14979915 - 14979998
Alignment:
Q  386 acgatgcatagatgactacgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtta 470  Q
    |||||| ||||||||| |||||| ||||||||| ||||||||||||| | | ||||||||||| |||||||||| ||| ||||||    
T  14979915 acgatgtatagatgacgacgaacgtgagaacaa-gtaataagatataaagtcgttttattgaggagaataagtaggaaagagtta 14979998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 386 - 470
Target Start/End: Original strand, 14989027 - 14989110
Alignment:
Q  386 acgatgcatagatgactacgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtta 470  Q
    |||||| ||||||||| |||||| ||||||||| ||||||||||||| | | ||||||||||| |||||||||| ||| ||||||    
T  14989027 acgatgtatagatgacgacgaacgtgagaacaa-gtaataagatataaagtcgttttattgaggagaataagtaggaaagagtta 14989110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 164; Significance: 2e-87; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 217 - 483
Target Start/End: Complemental strand, 20026617 - 20026350
Alignment:
Q  217 ataagagattttagttataaggttagacgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagttgtt 316  Q
    |||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||| ||||||||||||||||    
T  20026617 ataagaaatattagttataaggttagacgatgataataatgaccagtatcgagagaataaaacctttaattagaatggagtcgtagtgaggaaagttgtt 20026518  T
Q  317 gaagtcaaaattaatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacgaacatgagaac 416  Q
    |||||| ||||||||||||||||||||||||||||||||||||||   || ||||||  |||||||||||||||||||| |||| || ||| ||||||||    
T  20026517 gaagtcgaaattaatgatagggtgagataataactctaaattagaatgaagttaagattaggggaatggacgatgcatatatgaatatgaatatgagaac 20026418  T
Q  417 aaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtt-atgacgatgatgag 483  Q
    ||| |||||||||||| | |  |||||||||||||||| |||||||||||||| ||||||||| ||||    
T  20026417 aaattaataagatataaattatttttattgagaagaatcagtatgaaggagttaatgacgatggtgag 20026350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 219 - 483
Target Start/End: Original strand, 13477146 - 13477411
Alignment:
Q  219 aagagattttagttataaggttagacgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagttgttga 318  Q
    |||||||  ||||||||| | | ||| || ||||||||||| ||| |||||||||| ||||||| |||||||||| ||||  |||||||||||||| |||    
T  13477146 aagagataatagttataatggttgacaataataataatgactagtatcgagagaatgaaaccttaaattataatgtagtcttagtgaggaaagttgctga 13477245  T
Q  319 agtcaaaattaatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacgaacatgagaacaa 418  Q
    |||| |||||||||||| ||||||||||||| | ||| ||||| | || ||||||  |||||||||||| | |||| ||||||||| |||||||||||||    
T  13477246 agtccaaattaatgataaggtgagataataagtttaatttagaacgaagttaagattaggggaatggacaacgcatggatgactacaaacatgagaacaa 13477345  T
Q  419 agtaataagatatacaatggttttattgagaagaataagtatgaaggagtt-atgacgatgatgag 483  Q
    |||||||||||||| | |  ||||||||||||||||||||||||||||||| ||||||||| ||||    
T  13477346 agtaataagatataaagtcattttattgagaagaataagtatgaaggagttaatgacgatggtgag 13477411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 242 - 459
Target Start/End: Original strand, 4531278 - 4531495
Alignment:
Q  242 gacgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagttgttgaagtcaaaattaatgatagggtga 341  Q
    |||||| ||||||| || |||| |||||||||  |||||| |||||||| || |||| || || |||||| |||||||||| || | ||||||| |||||    
T  4531278 gacgataataataacgatcagtatcgagagaaggaaacctcgaattatagtgaagtctcattggggaaagctgttgaagtcgaattcaatgataaggtga 4531377  T
Q  342 gataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacgaacatgagaacaaagtaataagatatacaatggttt 441  Q
    |||||||||| ||||||||| | || ||||||  ||| |||||||| ||||||||||||||||| || |||||| |||| |||||||||||  || ||||    
T  4531378 gataataactttaaattagaacgaagttaagattaggtgaatggacaatgcatagatgactacgcacgtgagaataaagcaataagatataagatcgttt 4531477  T
Q  442 tattgagaagaataagta 459  Q
    |||||| |||||||||||    
T  4531478 tattgaaaagaataagta 4531495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 243 - 340
Target Start/End: Original strand, 22614613 - 22614709
Alignment:
Q  243 acgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagttgttgaagtcaaaattaatgatagggtg 340  Q
    ||||| ||||||| ||| ||| |||||||||| |||||||||||||||||| ||||  |||||||||||||| | ||||| |||||||||||| ||||    
T  22614613 acgataataataaagactagtatcgagagaatgaaaccttgaattataatgtagtcttagtgaggaaagttgctaaagtc-aaattaatgataaggtg 22614709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 270 - 361
Target Start/End: Original strand, 37945357 - 37945448
Alignment:
Q  270 agaataaaaccttgaattataatggagtcgcagtgaggaaagttgttgaagtcaaaattaatgatagggtgagataataactctaaattaga 361  Q
    ||||||||| |||||||||||||| ||||  |||||||||||||| ||||||  ||| |||||| | ||||||||||||||| ||| |||||    
T  37945357 agaataaaatcttgaattataatgaagtcttagtgaggaaagttgctgaagttgaaagtaatgaaaaggtgagataataactttaatttaga 37945448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 470
Target Start/End: Original strand, 15866928 - 15867013
Alignment:
Q  384 ggacgatgcatagatgactacgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtta 470  Q
    |||||||||||||||||| |||||| ||||||| ||||||||||||||| | | |||||||||||  ||||||||| ||| ||||||    
T  15866928 ggacgatgcatagatgacgacgaacgtgagaac-aagtaataagatataaagtcgttttattgaggtgaataagtaggaaagagtta 15867013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 340
Target Start/End: Complemental strand, 11655714 - 11655623
Alignment:
Q  249 ataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagttgttgaagtcaaaattaatgatagggtg 340  Q
    ||||||| ||| ||| |||| ||||| |||||||||||||||||| |||   |||||||||||||| | ||||| |||||||||||| ||||    
T  11655714 ataataaagactagtatcgacagaatgaaaccttgaattataatgtagtattagtgaggaaagttgctaaagtcgaaattaatgataaggtg 11655623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 384 - 470
Target Start/End: Complemental strand, 16060978 - 16060893
Alignment:
Q  384 ggacgatgcatagatgactacgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtta 470  Q
    |||||| | ||||||||| |||||| ||||||||| ||||||||||||| | | ||||||||||| |||||||||| ||| ||||||    
T  16060978 ggacgaagtatagatgacgacgaacgtgagaacaa-gtaataagatataaagtcgttttattgaggagaataagtaggaaagagtta 16060893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 470
Target Start/End: Complemental strand, 48377279 - 48377196
Alignment:
Q  384 ggacgatgcatagatgactacgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtta 470  Q
    ||||| || ||||||||| ||||||  |||||||| ||||||||||||| | | ||||||||||| |||||||||| ||| ||||||    
T  48377279 ggacggtgtatagatgacgacgaac--gagaacaa-gtaataagatataaagtcgttttattgaggagaataagtaggaaagagtta 48377196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 228 - 483
Target Start/End: Complemental strand, 24786779 - 24786523
Alignment:
Q  228 tagttataaggttagacgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagttgttgaagtcaaaat 327  Q
    ||||||||| | | |||||| |||||||| || ||  |||||||||| |||||||| ||||||||  ||||  |||||||||| ||||||||||| ||||    
T  24786779 tagttataatggttgacgataataataataactagaatcgagagaatgaaaccttggattataatatagtcttagtgaggaaacttgttgaagtcgaaat 24786680  T
Q  328 taatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacgaacatgagaacaaagtaataag 427  Q
    |||||||| ||||||||||||||| ||||||||| | || ||||||  |||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  24786679 taatgataaggtgagataataactataaattagaacgaagttaagattaggggaatgggcgatgcataaatgactacgaacatgagaacaaagtaataag 24786580  T
Q  428 atatacaatggttttattgagaagaataagtatgaaggagtt-atgacgatgatgag 483  Q
    | ||| | | |||||||||||||||||||||||||||||||| ||||||||| ||||    
T  24786579 agataaagttgttttattgagaagaataagtatgaaggagttaatgacgatggtgag 24786523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 229 - 463
Target Start/End: Original strand, 23655952 - 23656186
Alignment:
Q  229 agttataaggttagacgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagttgttgaagtcaaaatt 328  Q
    |||||||| | | |||||| ||||||||||| ||| |||||||||| |||| ||||||||||||| ||||  ||||| |||||||||||||||| | |||    
T  23655952 agttataatggttgacgataataataatgactagtatcgagagaatgaaacattgaattataatgtagtcttagtgaagaaagttgttgaagtcgagatt 23656051  T
Q  329 aatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacgaacatgagaacaaagtaataaga 428  Q
    ||| ||| ||||||||||| ||| |||||||||   || ||||||  |||||||||||| ||||||||| ||||| ||||||  ||||||||||||||||    
T  23656052 aataataaggtgagataattactttaaattagaatgaagttaagattaggggaatggacaatgcatagacgactatgaacatctgaacaaagtaataaga 23656151  T
Q  429 tatacaatggttttattgagaagaataagtatgaa 463  Q
    ||||  || ||||||||||| ||||||||||||||    
T  23656152 tataatatagttttattgaggagaataagtatgaa 23656186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 324 - 470
Target Start/End: Original strand, 44586047 - 44586193
Alignment:
Q  324 aaattaatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacgaacatgagaacaaagtaa 423  Q
    |||||||||||  ||||||||||||||| |||||||||   || ||||||  ||||||||||| |||| |||||||||||||||||| | |||||| |||    
T  44586047 aaattaatgatgaggtgagataataactttaaattagaatgaagttaagattaggggaatggatgatgaatagatgactacgaacatcacaacaaattaa 44586146  T
Q  424 taagatatacaatggttttattgagaagaataagtatgaaggagtta 470  Q
    ||||||||| ||| |||||||| |  |||||||||||||| ||||||    
T  44586147 taagatataaaatagttttatttaagagaataagtatgaaagagtta 44586193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 228 - 470
Target Start/End: Original strand, 18986923 - 18987165
Alignment:
Q  228 tagttataaggttagacgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagttgttgaagtcaaaat 327  Q
    |||||||||  || |||||| |||||||||||| || |||||||||||||||||||||| |||||| ||||   |||||| |||||   |||||| |||     
T  18986923 tagttataatctttgacgataataataatgaccggtatcgagagaataaaaccttgaataataatgaagtcttggtgagggaagtttaggaagtcgaaag 18987022  T
Q  328 taatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacgaacatgagaacaaagtaataag 427  Q
    ||||||   |||| |||||||||| || |||||| | |  || |||  ||| |||| |  || | ||| ||||||| |||  |||| || ||||||||||    
T  18987023 taatgacgaggtgcgataataactttagattagaacgaggttcagattaggagaatagttgacgtataaatgactatgaatgtgaggacgaagtaataag 18987122  T
Q  428 atatacaatggttttattgagaagaataagtatgaaggagtta 470  Q
    || || | |    ||| ||||||||||||||||||||||||||    
T  18987123 atgtaaagtcacgttaatgagaagaataagtatgaaggagtta 18987165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 123; Significance: 6e-63; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 228 - 470
Target Start/End: Original strand, 14481119 - 14481360
Alignment:
Q  228 tagttataaggttagacgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagttgttgaagtcaaaat 327  Q
    ||||||||| | | |||||| ||||||||||| ||| ||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||    
T  14481119 tagttataatggttgacgataataataatgactagtatcgagagaataaaaccttgaattataatgtagtcttagtgaggaaagttgttgaagtcaaaat 14481218  T
Q  328 taatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacgaacatgagaacaaagtaataag 427  Q
    |||||||| ||||||| | ||||| ||||||||| |  | ||||||  |||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  14481219 taatgataaggtgagacagtaactttaaattagaacggagttaagattagggaaatggacgatgcctagatgactacgaacatgagaacaaagtaataag 14481318  T
Q  428 atatacaatggttttattgagaagaataagtatgaaggagtta 470  Q
    |||||  ||   ||||||||| || ||||||||||| ||||||    
T  14481319 atataagat-actttattgaggaggataagtatgaaagagtta 14481360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 228 - 470
Target Start/End: Complemental strand, 17791507 - 17791265
Alignment:
Q  228 tagttataaggttagacgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagttgttgaagtcaaaat 327  Q
    ||||||||| | | |||||| ||||||| ||| ||| ||||  |||| || ||||||||| ||||  ||||  ||  |||||||||| ||||||| |||     
T  17791507 tagttataacgattgacgataataataacgactagtatcgaaggaatgaacccttgaattgtaatatagtcttagctaggaaagttgctgaagtcgaaac 17791408  T
Q  328 taatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacgaacatgagaacaaagtaataag 427  Q
    |||||||| |||||||||| |||| ||||||||| |||| ||||||  |||| ||||||||||||||| |||||||||||||||||||||||| ||||||    
T  17791407 taatgataaggtgagataacaactttaaattagaacaaagttaagattagggaaatggacgatgcataaatgactacgaacatgagaacaaagaaataag 17791308  T
Q  428 atatacaatggttttattgagaagaataagtatgaaggagtta 470  Q
    |||||  |  ||||||||||| || ||||||||||| ||||||    
T  17791307 atataagacagttttattgaggaggataagtatgaaagagtta 17791265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 228 - 470
Target Start/End: Complemental strand, 19099947 - 19099705
Alignment:
Q  228 tagttataaggttagacgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagttgttgaagtcaaaat 327  Q
    ||||||||| | | |||||| ||||||| ||| ||| ||||  |||| || ||||||||| ||||  ||||  ||  |||||||||| ||||||| |||     
T  19099947 tagttataacgattgacgataataataacgactagtatcgaaggaatgaacccttgaattgtaatatagtcttagctaggaaagttgctgaagtcgaaac 19099848  T
Q  328 taatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacgaacatgagaacaaagtaataag 427  Q
    |||||||| |||||||||| |||| ||||||||| |||| ||||||  |||| ||||||||||||||| |||||||||||||||||||||||| ||||||    
T  19099847 taatgataaggtgagataacaactttaaattagaacaaagttaagattagggaaatggacgatgcataaatgactacgaacatgagaacaaagaaataag 19099748  T
Q  428 atatacaatggttttattgagaagaataagtatgaaggagtta 470  Q
    |||||  |  ||||||||||| || ||||||||||| ||||||    
T  19099747 atataagacagttttattgaggaggataagtatgaaagagtta 19099705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 221 - 470
Target Start/End: Original strand, 5943447 - 5943696
Alignment:
Q  221 gagattttagttataaggttagacgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagttgttgaag 320  Q
    ||||| |||| ||||||||||||| ||||||||||  ||  || ||||||||||||||||||||||||||||| ||||| ||||| ||||||| ||||||    
T  5943447 gagatattagctataaggttagactatgataataacaactggtatcgagagaataaaaccttgaattataatgaagtcgtagtgacgaaagttattgaag 5943546  T
Q  321 tcaaaattaatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacgaacatgagaacaaag 420  Q
    |  ||  |||||||| |||| |||||||| |  |||||||| |||| ||||||  ||| |||||| | ||| ||||||||| | |||  ||||||  |      
T  5943547 ttgaaggtaatgataaggtgtgataataatttcaaattagaacaaaattaagattaggagaatggtcaatgtatagatgacgaggaatgtgagaatgaga 5943646  T
Q  421 taataagatatacaatggttttattgagaagaataagtatgaaggagtta 470  Q
    |||||||||||| | | | |||| |||||||||||||| |||| ||||||    
T  5943647 taataagatataaagtcgctttaatgagaagaataagtttgaaagagtta 5943696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 50 - 215
Target Start/End: Original strand, 25785206 - 25785370
Alignment:
Q  50 taagtgaatttaatgatttttaaaagatggacggaccgtaggcagtgaaaaacaatgataagatgaaagacaagggagatgtttaattctagatggctag 149  Q
    |||||||||||||| ||| ||||||||||  ||||   |||| ||||||| | ||| |||||| ||| ||||||||||||||||||   |||||||||||    
T  25785206 taagtgaatttaattattgttaaaagatgaccggaaaatagggagtgaaagaaaattataagaggaaggacaagggagatgtttaagg-tagatggctag 25785304  T
Q  150 gataaatataagtcccccgaattagagacgaatttaaacgctgaagtagttaagtagcaagagaag 215  Q
    ||||||||||||| ||||||||||||| | | |||||||| |||||||||||||||| || |||||    
T  25785305 gataaatataagttccccgaattagagccaagtttaaacggtgaagtagttaagtagtaaaagaag 25785370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 228 - 429
Target Start/End: Original strand, 16359075 - 16359276
Alignment:
Q  228 tagttataaggttagacgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagttgttgaagtcaaaat 327  Q
    ||||||||| ||| |||||| |||||||  ||| |  |||||||||||||| |||||||||||||| ||||  |||||||||||||  ||| |||||||     
T  16359075 tagttataaagtttgacgataataataacaaccggcatcgagagaataaaatcttgaattataatgaagtcttagtgaggaaagtttctgatgtcaaaag 16359174  T
Q  328 taatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacgaacatgagaacaaagtaataag 427  Q
    || ||||||  ||||||||||||| ||||||||    || ||||||  ||| |||| | ||||| ||||||||| |||||  ||||||||| ||||||||    
T  16359175 tactgatagaatgagataataactttaaattaggattaagttaagattaggagaatagtcgatgtatagatgacgacgaatgtgagaacaaggtaataag 16359274  T
Q  428 at 429  Q
    ||    
T  16359275 at 16359276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 228 - 464
Target Start/End: Complemental strand, 22924487 - 22924251
Alignment:
Q  228 tagttataaggttagacgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagttgttgaagtcaaaat 327  Q
    ||||||||| ||| |||||| ||||||| ||||  | ||||||||||||  |||| |||||||||  ||||  |||||||||||||||||||||| |||     
T  22924487 tagttataatgtttgacgataataataaagaccgatatcgagagaataactccttaaattataataaagtcttagtgaggaaagttgttgaagtcgaaag 22924388  T
Q  328 taatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacgaacatgagaacaaagtaataag 427  Q
    |||  ||| | ||||||||||||| |||| ||||   || |||||   |   |||||  ||||| ||| ||||| |||||  ||||||||||||||||||    
T  22924387 taactataagatgagataataactttaaaatagaatgaagttaagtttaatagaatgatcgatgtatatatgacgacgaatgtgagaacaaagtaataag 22924288  T
Q  428 atatacaatggttttattgagaagaataagtatgaag 464  Q
    ||||| | |   |||| || |||||||||||||||||    
T  22924287 atataaagtcactttaatgggaagaataagtatgaag 22924251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 228 - 456
Target Start/End: Complemental strand, 19185485 - 19185256
Alignment:
Q  228 tagttataaggttagacgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagttgttgaagtcaaaat 327  Q
    ||||||||| ||| |||||| |||||||  ||  || | |||||||||||| |||||||| ||||| ||||  |||||||||||||  | |||||||||     
T  19185485 tagttataatgtttgacgataataataacaactggtattgagagaataaaatcttgaattgtaatgaagtcttagtgaggaaagtttctaaagtcaaaag 19185386  T
Q  328 taatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacgaacatgagaacaaagtaataag 427  Q
    || |||||   |||||||||||||  |||||||    || ||||||  ||| |||| | ||||| |||||||||  ||||  ||||||||| ||||||||    
T  19185385 tactgataaaatgagataataacttcaaattaggattaagttaagattaggagaatagtcgatgtatagatgacagcgaatgtgagaacaaggtaataag 19185286  T
Q  428 atatacaatggtttt-attgagaagaataa 456  Q
    ||||| | | ||||| | ||||||||||||    
T  19185285 atataaagttgttttaaatgagaagaataa 19185256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 232 - 432
Target Start/End: Complemental strand, 21975820 - 21975620
Alignment:
Q  232 tataaggttagacgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagttgttgaagtcaaaattaat 331  Q
    ||||| ||| || ||| |||||||  ||| || |||||||||||||| ||||||||||||   || |  |||||||||||||  ||||||||| | || |    
T  21975820 tataatgtttgatgataataataacaaccggtatcgagagaataaaatcttgaattataaataagccttagtgaggaaagtttctgaagtcaagagtatt 21975721  T
Q  332 gatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacgaacatgagaacaaagtaataagatat 431  Q
    ||||  |||||||||||| | ||||||||    || ||||||  ||| |||| | ||||| ||||||||| |||||  ||||||||| ||||||||||||    
T  21975720 gataaagtgagataataaatttaaattaggattaagttaagattaggagaatagtcgatgtatagatgacgacgaatgtgagaacaaggtaataagatat 21975621  T
Q  432 a 432  Q
    |    
T  21975620 a 21975620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 232 - 432
Target Start/End: Complemental strand, 21998251 - 21998051
Alignment:
Q  232 tataaggttagacgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagttgttgaagtcaaaattaat 331  Q
    ||||| ||| || ||| |||||||  ||| || |||||||||||||| ||||||||||||   || |  |||||||||||||  ||||||||| | || |    
T  21998251 tataatgtttgatgataataataacaaccggtatcgagagaataaaatcttgaattataaataagccttagtgaggaaagtttctgaagtcaagagtatt 21998152  T
Q  332 gatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacgaacatgagaacaaagtaataagatat 431  Q
    ||||  |||||||||||| | ||||||||    || ||||||  ||| |||| | ||||| ||||||||| |||||  ||||||||| ||||||||||||    
T  21998151 gataaagtgagataataaatttaaattaggattaagttaagattaggagaatagtcgatgtatagatgacgacgaatgtgagaacaaggtaataagatat 21998052  T
Q  432 a 432  Q
    |    
T  21998051 a 21998051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 470
Target Start/End: Complemental strand, 16642762 - 16642677
Alignment:
Q  384 ggacgatgcatagatgactacgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtta 470  Q
    |||||||| ||||||||| |||||| ||||||||| ||||||||||||| | | ||||||||||| |||||||||| ||| ||||||    
T  16642762 ggacgatgtatagatgacgacgaacgtgagaacaa-gtaataagatataaagtcgttttattgaggagaataagtaggaaagagtta 16642677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 386 - 470
Target Start/End: Original strand, 4712452 - 4712535
Alignment:
Q  386 acgatgcatagatgactacgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtta 470  Q
    |||||| ||||||||| |||||| ||||||||| ||||||||||||| | | ||||||||||| |||||||||| ||| ||||||    
T  4712452 acgatgtatagatgacgacgaacgtgagaacaa-gtaataagatataaagtcgttttattgaggagaataagtaggaaagagtta 4712535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 232 - 432
Target Start/End: Complemental strand, 22160415 - 22160215
Alignment:
Q  232 tataaggttagacgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagttgttgaagtcaaaattaat 331  Q
    ||||| ||| |||||| |||||||  ||| || |||||||||||||| || |||||||||   || |  |||||| ||||||  ||||||||| | || |    
T  22160415 tataatgtttgacgataataataacaaccggtatcgagagaataaaatctagaattataaataagccttagtgagaaaagtttctgaagtcaagagtatt 22160316  T
Q  332 gatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacgaacatgagaacaaagtaataagatat 431  Q
    ||||  |||||||||||| | ||||||||    || ||||||  ||| |||| | ||||| ||||||||| |||||  ||||||||| ||||||||||||    
T  22160315 gataaagtgagataataaatttaaattaggattaagttaagattaggagaatagtcgatgtatagatgacgacgaatgtgagaacaaggtaataagatat 22160216  T
Q  432 a 432  Q
    |    
T  22160215 a 22160215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 228 - 298
Target Start/End: Original strand, 27870009 - 27870079
Alignment:
Q  228 tagttataaggttagacgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtc 298  Q
    |||| |||| ||| |||||| |||||||| ||| || ||||||||||||||||||||||||||||| ||||    
T  27870009 tagtgataatgtttgacgataataataataaccggtatcgagagaataaaaccttgaattataatgaagtc 27870079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 384 - 459
Target Start/End: Original strand, 14062431 - 14062505
Alignment:
Q  384 ggacgatgcatagatgactacgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagta 459  Q
    ||||||||||||| |||| |||||| ||||||| ||||||||||||||| | | |||||||||||  |||||||||    
T  14062431 ggacgatgcataggtgacgacgaacgtgagaac-aagtaataagatataaattcgttttattgaggtgaataagta 14062505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 432
Target Start/End: Original strand, 14054702 - 14054749
Alignment:
Q  384 ggacgatgcatagatgactacgaacatgagaacaaagtaataagatata 432  Q
    ||||||||||||| |||| |||||| ||||||| |||||||||||||||    
T  14054702 ggacgatgcataggtgacgacgaacgtgagaac-aagtaataagatata 14054749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 119; Significance: 1e-60; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 228 - 470
Target Start/End: Original strand, 24831518 - 24831759
Alignment:
Q  228 tagttataaggttagacgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagttgttgaagtcaaaat 327  Q
    ||||||||| | | ||| || ||||||||||| ||| ||||||||||||||||||||||||||||| ||||  ||||| |||||||||||||||||||||    
T  24831518 tagttataatggttgacaataataataatgactagtatcgagagaataaaaccttgaattataatgtagtcttagtgaagaaagttgttgaagtcaaaat 24831617  T
Q  328 taatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacgaacatgagaacaaagtaataag 427  Q
    |||||||| ||||||||| ||||| ||||||||| |  | ||||||  |||| |||||| ||||| ||||||||||||||||||||||||||||||||||    
T  24831618 taatgataaggtgagatagtaactttaaattagaacggagttaagattagggaaatggatgatgcctagatgactacgaacatgagaacaaagtaataag 24831717  T
Q  428 atatacaatggttttattgagaagaataagtatgaaggagtta 470  Q
    |||||  || | ||||||||| || ||||||||||| ||||||    
T  24831718 atataagatag-tttattgaggaggataagtatgaaagagtta 24831759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 272 - 361
Target Start/End: Complemental strand, 13937505 - 13937416
Alignment:
Q  272 aataaaaccttgaattataatggagtcgcagtgaggaaagttgttgaagtcaaaattaatgatagggtgagataataactctaaattaga 361  Q
    |||||||||||||||||||||| ||||  ||||||| ||||| | |||||| ||| |||||||| ||||||||||||||| |||||||||    
T  13937505 aataaaaccttgaattataatgaagtcttagtgagggaagttttcgaagtcgaaagtaatgataaggtgagataataactttaaattaga 13937416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 228 - 361
Target Start/End: Original strand, 23960405 - 23960538
Alignment:
Q  228 tagttataaggttagacgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagttgttgaagtcaaaat 327  Q
    ||||||||| ||| || ||| || |||| |||| || |||||| ||||| ||||| | ||||||||||||    | ||||||||||| ||| |||||||     
T  23960405 tagttataaagtttgatgataattataacgaccggtatcgagaaaataagaccttaagttataatggagttttggcgaggaaagttgctgacgtcaaaag 23960504  T
Q  328 taatgatagggtgagataataactctaaattaga 361  Q
    ||||| || ||||||||||||||| |||||||||    
T  23960505 taatggtaaggtgagataataactttaaattaga 23960538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 228 - 361
Target Start/End: Complemental strand, 24759393 - 24759260
Alignment:
Q  228 tagttataaggttagacgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagttgttgaagtcaaaat 327  Q
    |||||||||  || |||||| ||| ||| |||| || ||||||||||||  |||| |||||||||| ||||  | |||||||||||| ||||||| |||     
T  24759393 tagttataatttttgacgataatattaacgacctgtatcgagagaataactccttaaattataatgaagtcttactgaggaaagttgctgaagtcgaaag 24759294  T
Q  328 taatgatagggtgagataataactctaaattaga 361  Q
    ||| |||| | ||||||||||||| |||| ||||    
T  24759293 taacgataagatgagataataactttaaaataga 24759260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 228 - 470
Target Start/End: Original strand, 3161 - 3403
Alignment:
Q  228 tagttataaggttagacgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagttgttgaagtcaaaat 327  Q
    ||||||||| | | |||||| |||||||||||  || || ||||||| ||||||||||||||| || |||| || |||||||||||||||||||| || |    
T  3161 tagttataatggttgacgataataataatgactggtatcaagagaatgaaaccttgaattatagtgaagtctcaatgaggaaagttgttgaagtctaatt 3260  T
Q  328 taatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacgaacatgagaacaaagtaataag 427  Q
    |||||||| ||||||||||||||| ||||||||| | || ||||||  |||||||||||||||||||||||||||||  || | ||||||||||||||||    
T  3261 taatgataaggtgagataataactttaaattagaacgaagttaagattaggggaatggacgatgcatagatgactacacacgtaagaacaaagtaataag 3360  T
Q  428 atatacaatggttttattgagaagaataagtatgaaggagtta 470  Q
    |||||  || ||||||||||| ||||| |||||||| ||||||    
T  3361 atataagatcgttttattgaggagaatgagtatgaaagagtta 3403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 251 - 483
Target Start/End: Original strand, 11097910 - 11098144
Alignment:
Q  251 aataatgaccagtgtcgagagaataaaaccttgaattataatgg-agtcgcagtgaggaaagttgttgaagtcaaaattaatgatagggtgagataataa 349  Q
    ||||| ||| ||| |||||||||| ||||||||||||||| | | ||||  |||||||||||||  |||||||||||||||||||| |||||||||||||    
T  11097910 aataacgactagtatcgagagaatgaaaccttgaattatatttgtagtcttagtgaggaaagtttctgaagtcaaaattaatgataaggtgagataataa 11098009  T
Q  350 ctctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacgaacatgagaacaaagtaataagatatacaatggttttattgaga 449  Q
    || ||||||||| | || ||||||  ||||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||| | | ||||||||||||    
T  11098010 ctttaaattagaacgaagttaagattaggggaatggaagatgcataaatgactacaaacatgagaacaaagtaataagagataaagtcgttttattgaga 11098109  T
Q  450 agaataagtatgaaggagtt-atgacgatgatgag 483  Q
    ||||||||||||||||| || ||||||||| ||||    
T  11098110 agaataagtatgaaggaattaatgacgatggtgag 11098144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 242 - 463
Target Start/End: Complemental strand, 11556536 - 11556315
Alignment:
Q  242 gacgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagttgttgaagtcaaaattaatgatagggtga 341  Q
    |||||| ||||||| ||| ||| | |||||||| |||||||||||||||||| ||||  |||||||||||||| ||||||| |||||||||||| |||||    
T  11556536 gacgataataataacgactagtattgagagaatgaaaccttgaattataatgtagtcttagtgaggaaagttgctgaagtcgaaattaatgatatggtga 11556437  T
Q  342 gataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacgaacatgagaacaaagtaataagatatacaatggttt 441  Q
    |||||||||| |||||||||   || ||||||  ||||||||||| |||| |||||||||||||||||| | ||||||||||||||||| | ||| ||||    
T  11556436 gataataactttaaattagaatgaagttaagattaggggaatggatgatgaatagatgactacgaacatcacaacaaagtaataagataaaaaatagttt 11556337  T
Q  442 tattgagaagaataagtatgaa 463  Q
    ||||||| ||||||| ||||||    
T  11556336 tattgaggagaataaatatgaa 11556315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 249 - 407
Target Start/End: Original strand, 18220309 - 18220467
Alignment:
Q  249 ataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagttgttgaagtcaaaattaatgatagggtgagataata 348  Q
    ||||||| ||| ||| |||||||||| |||||||||||||||||| ||||  |||||| ||||||||||||||| |||||||||||| ||||||||||||    
T  18220309 ataataacgactagtatcgagagaatgaaaccttgaattataatgtagtcttagtgagaaaagttgttgaagtcgaaattaatgataaggtgagataata 18220408  T
Q  349 actctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacgaa 407  Q
    ||| || ||||||   || ||||||  ||||||||||| |||| ||||||| |||||||    
T  18220409 actttatattagaatgaagttaagattaggggaatggatgatgaatagatggctacgaa 18220467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 228 - 429
Target Start/End: Original strand, 15872344 - 15872545
Alignment:
Q  228 tagttataaggttagacgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagttgttgaagtcaaaat 327  Q
    ||||||||| ||| |||||| |||||||  ||| |  |||||||||||||| |||||||||||||| || |  |||||||||||||  |||  ||||||     
T  15872344 tagttataatgtttgacgataataataacaaccggcatcgagagaataaaatcttgaattataatgaagccttagtgaggaaagtttctgatatcaaaag 15872443  T
Q  328 taatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacgaacatgagaacaaagtaataag 427  Q
    || ||||||  ||||||||||||| ||||||||    || ||||||  ||| |||| | ||||| ||||||||| |||||  ||||||||| ||||||||    
T  15872444 tactgatagaatgagataataactttaaattaggattaagttaagattaggagaatagtcgatgtatagatgacgacgaatgtgagaacaaggtaataag 15872543  T
Q  428 at 429  Q
    ||    
T  15872544 at 15872545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 228 - 361
Target Start/End: Original strand, 18556414 - 18556547
Alignment:
Q  228 tagttataaggttagacgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagttgttgaagtcaaaat 327  Q
    ||||||||| ||| |||||| |||||||||||  || |||||||||| |||||||||||||||||| ||||   |||||| |||||  ||||||| |||     
T  18556414 tagttataatgtttgacgataataataatgactggtatcgagagaatgaaaccttgaattataatgaagtcttggtgagggaagtttatgaagtcgaaag 18556513  T
Q  328 taatgatagggtgagataataactctaaattaga 361  Q
    ||||||||  ||| |||||||||| |||||||||    
T  18556514 taatgataaagtgcgataataactttaaattaga 18556547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 228 - 429
Target Start/End: Original strand, 15889936 - 15890137
Alignment:
Q  228 tagttataaggttagacgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagttgttgaagtcaaaat 327  Q
    ||||||||| ||| || ||| |||||||  ||| |  |||||||||||||| |||||||||||||| || |  |||||||||||||  ||| |||||||     
T  15889936 tagttataatgtttgatgataataataacaaccggcatcgagagaataaaatcttgaattataatgaagccttagtgaggaaagtttctgatgtcaaaag 15890035  T
Q  328 taatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacgaacatgagaacaaagtaataag 427  Q
    || ||||||  ||||||||||||| ||||||||    || ||||||  |||  ||| | ||||| ||||||||| |||||  ||||||||| ||||||||    
T  15890036 tactgatagaatgagataataactttaaattaggattaagttaagattaggaaaatagtcgatgtatagatgacgacgaatgtgagaacaaggtaataag 15890135  T
Q  428 at 429  Q
    ||    
T  15890136 at 15890137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 403 - 463
Target Start/End: Original strand, 18231148 - 18231208
Alignment:
Q  403 acgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaa 463  Q
    |||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  18231148 acgaacttgagaacaaagtaataagatataaaatagttttattgagaagaataagtatgaa 18231208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 429
Target Start/End: Complemental strand, 12229516 - 12229315
Alignment:
Q  228 tagttataaggttagacgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagttgttgaagtcaaaat 327  Q
    ||||||||| ||| |||||| |||||||  ||| || | || | ||||||| ||||||||||| || ||||  ||||| |||||||  ||||| | |||     
T  12229516 tagttataatgtttgacgataataataacaaccggtattgaaaaaataaaatcttgaattatactgaagtcttagtgaagaaagtttctgaagccgaaag 12229417  T
Q  328 taatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacgaacatgagaacaaagtaataag 427  Q
    || |||||  ||||||||||||||  |||||||    || ||||||  ||| |||| | ||||| ||||||||| || ||  ||||||||| | ||||||    
T  12229416 tactgataaagtgagataataacttcaaattaggattaagttaagattaggagaatagtcgatgtatagatgacgacaaatgtgagaacaaggaaataag 12229317  T
Q  428 at 429  Q
    ||    
T  12229316 at 12229315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 361
Target Start/End: Original strand, 16284583 - 16284660
Alignment:
Q  284 aattataatggagtcgcagtgaggaaagttgttgaagtcaaaattaatgatagggtgagataataactctaaattaga 361  Q
    |||||||||| |||   |||||||||||||||||||||  ||| ||| |||| | ||||||||||||| |||| ||||    
T  16284583 aattataatgaagttttagtgaggaaagttgttgaagttgaaagtaacgataagatgagataataactttaaaataga 16284660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 8e-56; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 228 - 470
Target Start/End: Complemental strand, 29294486 - 29294244
Alignment:
Q  228 tagttataaggttagacgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagttgttgaagtcaaaat 327  Q
    ||||||||| | | |||||| ||||||| |||| || |||||||||| ||||||  ||||||| || |||| ||||||||||||||| |||||||||| |    
T  29294486 tagttataatgattgacgataataataacgaccggtatcgagagaatgaaacctcaaattatagtgaagtctcagtgaggaaagttgctgaagtcaaatt 29294387  T
Q  328 taatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacgaacatgagaacaaagtaataag 427  Q
    |||| ||| ||||||||||||||| ||||||||  | || ||||||  |||||||||||||||||| ||||||||||| || |||||||||||||| |||    
T  29294386 taattataaggtgagataataactttaaattaggacgaagttaagagtaggggaatggacgatgcacagatgactacgcacgtgagaacaaagtaacaag 29294287  T
Q  428 atatacaatggttttattgagaagaataagtatgaaggagtta 470  Q
    |||||  || ||||||||||| |||||||||||||| ||||||    
T  29294286 atataagatcgttttattgaggagaataagtatgaaagagtta 29294244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 470
Target Start/End: Complemental strand, 23658999 - 23658914
Alignment:
Q  384 ggacgatgcatagatgactacgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtta 470  Q
    |||| ||| ||||||||| |||||| ||||||||| ||||||||||||| ||| ||||||||||| |||||||||| ||| ||||||    
T  23658999 ggaccatgtatagatgacgacgaacgtgagaacaa-gtaataagatataaaatcgttttattgagtagaataagtaggaaagagtta 23658914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 327 - 463
Target Start/End: Original strand, 1566682 - 1566818
Alignment:
Q  327 ttaatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacgaacatgagaacaaagtaataa 426  Q
    |||||| || |||| |||||||||| ||||||||| | || ||||||  || ||||||||||||||||||||||| |||  | ||||||||||||||||     
T  1566682 ttaatggtaaggtgggataataactttaaattagaacgaagttaagattagaggaatggacgatgcatagatgacgacgcgcgtgagaacaaagtaatag 1566781  T
Q  427 gatatacaatggttttattgagaagaataagtatgaa 463  Q
    |||||| ||| ||||||||||| ||||||||||||||    
T  1566782 gatataaaattgttttattgaggagaataagtatgaa 1566818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 470
Target Start/End: Original strand, 13881907 - 13881992
Alignment:
Q  384 ggacgatgcatagatgactacgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtta 470  Q
    |||||||| ||||||||| |||||| ||||||||| ||||||||||||| | | ||||||||||| |||||||||| ||| ||||||    
T  13881907 ggacgatgtatagatgacgacgaacgtgagaacaa-gtaataagatataaagtcgttttattgaggagaataagtaggaaagagtta 13881992  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 469
Target Start/End: Original strand, 51626644 - 51626728
Alignment:
Q  384 ggacgatgcatagatgactacgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtt 469  Q
    |||||||| ||||||||| |||||| ||||||||| ||||||||||||| | | ||||||| ||| |||||||||| ||| |||||    
T  51626644 ggacgatgtatagatgacgacgaacgtgagaacaa-gtaataagatataaagtcgttttatggaggagaataagtaggaaagagtt 51626728  T

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Target: scaffold0048 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 53335 - 53131
Alignment:
Q  1 ttacctcaggataatagcgattgtaaaacataaaccaatgatatcgttgtaagtgaatttaatgatttttaaaagatggacggaccgtaggcagtgaaaa 100  Q
    |||| ||||||||  ||||| | ||||||||| ||  ||||||  | | ||||||| |||||| |||||||| | |||| ||| |   ||||||| |||     
T  53335 ttacttcaggatatcagcgagtctaaaacatacacggatgatagtgatctaagtgactttaattatttttaatacatggtcgggcaagaggcagtcaaat 53236  T
Q  101 acaatgataagatgaaagacaagggagatgtttaattctagatggctaggataaatataagtcccccgaattagagacgaatttaaacgctgaagtagtt 200  Q
    || ||||||||| ||| || ||||||  |||||||  ||||||||||||||||||||||||||||| ||||||||||| | |||||| | ||||||||||    
T  53235 acgatgataagaggaaggaaaagggatgtgtttaag-ctagatggctaggataaatataagtcccctgaattagagacaagtttaaatggtgaagtagtt 53137  T
Q  201 aagtag 206  Q
    ||||||    
T  53136 aagtag 53131  T

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Target: scaffold0048; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 217 - 321
Target Start/End: Complemental strand, 52728 - 52627
Alignment:
Q  217 ataagagattttagttataaggttagacgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagttgtt 316  Q
    |||||| || ||||||||||||||||||||| |||| ||   || || |||||||||||||||||| |||||||||||||||  |||||||||||||| |    
T  52728 ataagatatattagttataaggttagacgataataacaa---ccggtatcgagagaataaaaccttaaattataatggagtcttagtgaggaaagttgct 52632  T
Q  317 gaagt 321  Q
    |||||    
T  52631 gaagt 52627  T

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Target: scaffold0048; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 87139 - 87188
Alignment:
Q  265 tcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagttg 314  Q
    |||||||||||||||||| |||||||||||||||  || |||||||||||    
T  87139 tcgagagaataaaaccttaaattataatggagtcttagagaggaaagttg 87188  T

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Target: scaffold1001 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 214 - 335
Target Start/End: Complemental strand, 1663 - 1542
Alignment:
Q  214 agaataagagattttagttataaggttagacgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagtt 313  Q
    |||||||||| |  ||||||||| | | |||||| ||||||| ||| ||| |||||||| | |||||||||||||||||| ||||   ||||||||||||    
T  1663 agaataagaggtaatagttataatggttgacgataataataacgactagtatcgagagattgaaaccttgaattataatgtagtcttggtgaggaaagtt 1564  T
Q  314 gttgaagtcaaaattaatgata 335  Q
    ||||||||| ||||||||||||    
T  1563 gttgaagtcgaaattaatgata 1542  T

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Target: scaffold0094 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 228 - 361
Target Start/End: Original strand, 4200 - 4333
Alignment:
Q  228 tagttataaggttagacgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagttgttgaagtcaaaat 327  Q
    ||||||||| ||| |||||| ||||||||||| ||| |||||||||| |||||||||||||||||| ||||   |||||| |||||  ||||||| |||     
T  4200 tagttataatgtttgacgataataataatgactagtatcgagagaatgaaaccttgaattataatgaagtcttggtgagggaagtttatgaagtcgaaag 4299  T
Q  328 taatgatagggtgagataataactctaaattaga 361  Q
    |||||||   ||| |||||||||| |||||||||    
T  4300 taatgatcaagtgcgataataactttaaattaga 4333  T

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Target: scaffold0385 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 228 - 456
Target Start/End: Complemental strand, 14843 - 14614
Alignment:
Q  228 tagttataaggttagacgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagttgttgaagtcaaaat 327  Q
    ||||||||| ||| |||||| |||||||  ||  ||  ||||||||||||| |||||||||||| | || |  |||||||||| ||  |||||||||||     
T  14843 tagttataatgtttgacgataataataacaactggtaacgagagaataaaatcttgaattataaagaagccttagtgaggaaattttctgaagtcaaaag 14744  T
Q  328 taatgatagggtgagataataactctaaattagaccaaatttaagacaaggggaatggacgatgcatagatgactacgaacatgagaacaaagtaataag 427  Q
    || |||||  |||||||||||| | ||||||||    || ||||||  ||| |||  | ||||| ||||||||| |||||  ||||||||| ||||||||    
T  14743 tattgataaagtgagataataaatttaaattaggattaagttaagattaggagaaaagtcgatgtatagatgacgacgaatgtgagaacaaggtaataag 14644  T
Q  428 atatacaatggtttt-attgagaagaataa 456  Q
    ||||| | | ||||| | ||||||||||||    
T  14643 atataaagtcgttttaaatgagaagaataa 14614  T

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Target: scaffold0319 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 470
Target Start/End: Original strand, 13220 - 13305
Alignment:
Q  384 ggacgatgcatagatgactacgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtta 470  Q
    |||||||| ||||||||| |||||||||||||| ||||| ||||||||| | | ||||||||||| |||||||||| ||| ||||||    
T  13220 ggacgatgtatagatgacgacgaacatgagaac-aagtactaagatataaagtcgttttattgaggagaataagtaagaaagagtta 13305  T

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Target: scaffold0118 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 267 - 432
Target Start/End: Complemental strand, 10679 - 10513
Alignment:
Q  267 gagagaataaaaccttgaattataatggagtcgcagtgaggaaagttgttgaagtcaaaattaatgatagggtgagataataactctaaatta-gaccaa 365  Q
    |||||||||||| |||||||||||||| ||    |||||||||||||  |||||| |||| ||||| ||  ||||||||||| || ||||||| ||  ||    
T  10679 gagagaataaaatcttgaattataatgaagcattagtgaggaaagtttctgaagttaaaagtaatggtaaagtgagataatagctttaaattaggattaa 10580  T
Q  366 atttaagacaaggggaatggacgatgcatagatgactacgaacatgagaacaaagtaataagatata 432  Q
      ||||||  ||| |||| | ||||| ||||||||| |||||  ||||||||| |||||||||||||    
T  10579 ggttaagattaggagaatagtcgatgtatagatgacgacgaatgtgagaacaaggtaataagatata 10513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 470
Target Start/End: Complemental strand, 131247 - 131162
Alignment:
Q  384 ggacgatgcatagatgactacgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtta 470  Q
    |||||||| ||| ||||| |||||| ||||||||| ||||||||||||| | | |||||||||||||||||||||| ||| ||||||    
T  131247 ggacgatgtataaatgacgacgaacgtgagaacaa-gtaataagatataaagtcgttttattgagaagaataagtaggaaagagtta 131162  T

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Target: scaffold0166 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 228 - 361
Target Start/End: Complemental strand, 1887 - 1754
Alignment:
Q  228 tagttataaggttagacgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtcgcagtgaggaaagttgttgaagtcaaaat 327  Q
    |||||||||  || |||||| ||| ||| |||| || ||||||||||||  |||| |||||||||| ||||  | |||||||||||| ||||||| |||     
T  1887 tagttataatttttgacgataatattaacgacctgtatcgagagaataactccttaaattataatgaagtcttactgaggaaagttgctgaagtcgaaag 1788  T
Q  328 taatgatagggtgagataataactctaaattaga 361  Q
    ||| |||| | ||||||||||||| |||| ||||    
T  1787 taacgataagatgagataataactttaaaataga 1754  T

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Target: scaffold0290 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 244 - 298
Target Start/End: Original strand, 13706 - 13760
Alignment:
Q  244 cgatgataataatgaccagtgtcgagagaataaaaccttgaattataatggagtc 298  Q
    |||| |||||||||||| || ||||||||||||||||||||||||||||| ||||    
T  13706 cgataataataatgaccggtatcgagagaataaaaccttgaattataatgaagtc 13760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 384 - 470
Target Start/End: Complemental strand, 29523 - 29438
Alignment:
Q  384 ggacgatgcatagatgactacgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagtatgaaggagtta 470  Q
    |||||||| ||||||||| |||||| || |||||| ||||||||||||| | | ||||||||||| |||||||||| ||| ||||||    
T  29523 ggacgatgtatagatgacgacgaacgtgtgaacaa-gtaataagatataaagtcgttttattgaggagaataagtaggaaagagtta 29438  T

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Target: scaffold0218 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 384 - 459
Target Start/End: Complemental strand, 14842 - 14768
Alignment:
Q  384 ggacgatgcatagatgactacgaacatgagaacaaagtaataagatatacaatggttttattgagaagaataagta 459  Q
    |||||||| ||||||||| |||||| |||||||||  |||||||||||| | | ||||||||||| ||||||||||    
T  14842 ggacgatgtatagatgacgacgaacgtgagaacaac-taataagatataaagtcgttttattgaggagaataagta 14768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0145 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 361
Target Start/End: Complemental strand, 13134 - 13057
Alignment:
Q  284 aattataatggagtcgcagtgaggaaagttgttgaagtcaaaattaatgatagggtgagataataactctaaattaga 361  Q
    |||||||||| |||   |||||||||||||||||||||  ||| ||| |||| | ||||||||||||| |||| ||||    
T  13134 aattataatgaagttttagtgaggaaagttgttgaagttgaaagtaacgataagatgagataataactttaaaataga 13057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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