View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19319_low_6 (Length: 436)
Name: NF19319_low_6
Description: NF19319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19319_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 10 - 249
Target Start/End: Original strand, 16826718 - 16826957
Alignment:
| Q |
10 |
ataatactaacccttctaaacatttagcacttcaagaatatccatgtaattacaacaataattacattgaagcatctgatattctttctgtaccaaacca |
109 |
Q |
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| T |
16826718 |
ataatactaacccttctaaacatttagcacttcaagaatatccatgtaattacaacaataattacattgaagcatctgatattctttctgtaccaaacca |
16826817 |
T |
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| Q |
110 |
gtcaagctctatttgccacaaaaatttccagctttcattcatccttataaataagctgaaatgcaagcaaattttcatcacaggaagaatttttccttgt |
209 |
Q |
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| T |
16826818 |
gtcaagctctatttaccacaaaaatttccagctttcattcatccttataaataagctgaaatgcaagcaaattttcatcacaggaagaatttttcattgt |
16826917 |
T |
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| Q |
210 |
cacaaatcattttcagcatgccatcaataatctgtggaag |
249 |
Q |
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| T |
16826918 |
cacaaatcattttcagcatgccatcaataatctgtggaag |
16826957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 336 - 421
Target Start/End: Original strand, 16827042 - 16827127
Alignment:
| Q |
336 |
ataccattgtgtttctttgtcaaattcctagcaaatagcaagaatataactagaaaagccactccagcaattcctcctagtattat |
421 |
Q |
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| T |
16827042 |
ataccattgtgtttctttgtcaaattcctagcaaatagcaagaatataactagaaaagccactccagcaattcctcctagtattat |
16827127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 16819506 - 16819572
Alignment:
| Q |
57 |
aattacaacaataattacattgaagcatctgatattctttctgtaccaaaccagtcaagctctattt |
123 |
Q |
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| T |
16819506 |
aattacaacaattattgcattgaagcatctgatattctctatataccaaaccaatcaagctctattt |
16819572 |
T |
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