View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19319_low_8 (Length: 383)

Name: NF19319_low_8
Description: NF19319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19319_low_8
NF19319_low_8
[»] chr8 (23 HSPs)
chr8 (1-376)||(8299973-8300348)
chr8 (1-376)||(7924556-7924931)
chr8 (1-366)||(41664963-41665329)
chr8 (1-376)||(32266732-32267107)
chr8 (1-376)||(9922771-9923146)
chr8 (85-368)||(13396566-13396849)
chr8 (191-376)||(172273-172458)
chr8 (1-335)||(13879082-13879416)
chr8 (1-335)||(25090598-25090932)
chr8 (1-137)||(20824708-20824844)
chr8 (4-137)||(17699889-17700022)
chr8 (1-83)||(172634-172716)
chr8 (1-137)||(43270861-43270997)
chr8 (1-137)||(42177147-42177280)
chr8 (264-308)||(12134566-12134610)
chr8 (252-303)||(28993075-28993126)
chr8 (238-304)||(17659073-17659139)
chr8 (238-308)||(23680400-23680470)
chr8 (252-333)||(2170555-2170636)
chr8 (274-315)||(13200296-13200337)
chr8 (252-337)||(20824505-20824590)
chr8 (288-337)||(42177471-42177520)
chr8 (263-303)||(25193332-25193372)
[»] chr1 (14 HSPs)
chr1 (1-376)||(35541219-35541594)
chr1 (1-376)||(6050773-6051148)
chr1 (6-376)||(11908705-11909075)
chr1 (1-335)||(47622672-47623006)
chr1 (8-137)||(43388774-43388903)
chr1 (109-329)||(2491429-2491649)
chr1 (328-376)||(51052650-51052698)
chr1 (252-303)||(22191627-22191678)
chr1 (253-303)||(3073993-3074043)
chr1 (238-303)||(21405081-21405146)
chr1 (238-307)||(30110757-30110826)
chr1 (238-305)||(17708220-17708287)
chr1 (263-308)||(47106538-47106583)
chr1 (263-303)||(52691715-52691755)
[»] scaffold0034 (1 HSPs)
scaffold0034 (1-376)||(105438-105813)
[»] chr7 (22 HSPs)
chr7 (1-376)||(4937723-4938098)
chr7 (1-376)||(11276843-11277222)
chr7 (1-373)||(47877156-47877528)
chr7 (1-376)||(29968144-29968519)
chr7 (1-376)||(17720805-17721180)
chr7 (1-373)||(235033-235404)
chr7 (160-365)||(37919725-37919930)
chr7 (1-137)||(31423011-31423147)
chr7 (1-334)||(37254970-37255303)
chr7 (238-305)||(34231940-34232007)
chr7 (241-332)||(36363738-36363829)
chr7 (238-303)||(17055772-17055837)
chr7 (274-337)||(25619674-25619737)
chr7 (238-308)||(4077513-4077583)
chr7 (253-303)||(22819564-22819614)
chr7 (238-308)||(27218952-27219022)
chr7 (263-297)||(27854299-27854333)
chr7 (265-303)||(28173835-28173873)
chr7 (274-336)||(31422814-31422876)
chr7 (274-308)||(45943089-45943123)
chr7 (263-303)||(11338990-11339030)
chr7 (265-301)||(27941353-27941389)
[»] chr4 (27 HSPs)
chr4 (1-376)||(23642186-23642561)
chr4 (1-368)||(47418982-47419349)
chr4 (1-368)||(19755445-19755812)
chr4 (1-368)||(19783994-19784361)
chr4 (1-373)||(15740394-15740765)
chr4 (1-373)||(1828135-1828507)
chr4 (196-376)||(47685685-47685865)
chr4 (1-335)||(54482754-54483088)
chr4 (1-334)||(48312307-48312639)
chr4 (1-335)||(2821629-2821966)
chr4 (1-96)||(23647844-23647939)
chr4 (1-335)||(5789687-5790021)
chr4 (1-137)||(55725301-55725437)
chr4 (1-332)||(11586793-11587124)
chr4 (1-146)||(19735330-19735475)
chr4 (1-176)||(46146046-46146222)
chr4 (253-303)||(4640526-4640576)
chr4 (263-308)||(20395834-20395879)
chr4 (265-308)||(29553599-29553642)
chr4 (238-305)||(42778479-42778546)
chr4 (265-332)||(46145889-46145956)
chr4 (205-304)||(48242619-48242718)
chr4 (265-308)||(49926125-49926168)
chr4 (238-305)||(53486785-53486852)
chr4 (346-376)||(13270831-13270861)
chr4 (265-303)||(23657638-23657676)
chr4 (262-303)||(46543222-46543263)
[»] chr3 (29 HSPs)
chr3 (1-376)||(2364447-2364822)
chr3 (3-368)||(10323168-10323533)
chr3 (1-376)||(19919824-19920199)
chr3 (1-373)||(34332410-34332782)
chr3 (210-376)||(7312946-7313112)
chr3 (112-373)||(40930245-40930495)
chr3 (1-335)||(48569634-48569968)
chr3 (1-332)||(962758-963089)
chr3 (246-360)||(7032492-7032606)
chr3 (1-147)||(16179346-16179492)
chr3 (17-303)||(17097488-17097773)
chr3 (4-137)||(12341853-12341986)
chr3 (1-146)||(15312981-15313127)
chr3 (1-332)||(3141066-3141396)
chr3 (1-137)||(19891086-19891222)
chr3 (238-301)||(31547616-31547679)
chr3 (266-308)||(26010285-26010327)
chr3 (238-308)||(26846105-26846175)
chr3 (238-308)||(47537506-47537576)
chr3 (3-144)||(20531648-20531788)
chr3 (238-303)||(44888147-44888212)
chr3 (252-304)||(2756084-2756136)
chr3 (263-303)||(9509997-9510037)
chr3 (263-303)||(9517972-9518012)
chr3 (274-334)||(19890890-19890950)
chr3 (238-308)||(15279803-15279873)
chr3 (265-303)||(31675173-31675211)
chr3 (265-303)||(31921209-31921247)
chr3 (265-301)||(27924925-27924961)
[»] chr5 (25 HSPs)
chr5 (1-376)||(42513890-42514265)
chr5 (1-376)||(12825369-12825744)
chr5 (1-376)||(30731909-30732284)
chr5 (1-376)||(27116768-27117131)
chr5 (1-376)||(23238554-23238928)
chr5 (1-376)||(31641681-31642056)
chr5 (1-373)||(35983386-35983758)
chr5 (1-362)||(28535270-28535631)
chr5 (1-373)||(42928304-42928676)
chr5 (1-335)||(27795694-27796029)
chr5 (1-137)||(25857019-25857155)
chr5 (4-137)||(10777193-10777326)
chr5 (1-137)||(8299777-8299913)
chr5 (1-332)||(33169872-33170203)
chr5 (252-332)||(24408142-24408222)
chr5 (1-62)||(27165545-27165606)
chr5 (35-332)||(18089393-18089687)
chr5 (238-308)||(20208551-20208621)
chr5 (188-332)||(27165712-27165856)
chr5 (265-303)||(476456-476494)
chr5 (265-302)||(380145-380182)
chr5 (252-337)||(8300028-8300113)
chr5 (265-306)||(11574553-11574594)
chr5 (265-306)||(22095109-22095150)
chr5 (252-337)||(25857270-25857355)
[»] scaffold0472 (1 HSPs)
scaffold0472 (1-376)||(3422-3797)
[»] chr6 (32 HSPs)
chr6 (1-323)||(24767024-24767346)
chr6 (140-373)||(2553810-2554043)
chr6 (170-373)||(21168372-21168574)
chr6 (1-335)||(14372586-14372920)
chr6 (75-336)||(15958482-15958743)
chr6 (1-107)||(2554045-2554151)
chr6 (1-137)||(17605929-17606065)
chr6 (1-137)||(20882628-20882764)
chr6 (4-333)||(10576848-10577176)
chr6 (1-303)||(33185678-33185980)
chr6 (4-137)||(21629705-21629838)
chr6 (18-137)||(17573268-17573387)
chr6 (1-164)||(13938101-13938264)
chr6 (252-332)||(13937914-13937994)
chr6 (253-337)||(20882880-20882964)
chr6 (263-303)||(26513967-26514007)
chr6 (238-308)||(649898-649968)
chr6 (263-308)||(18051306-18051351)
chr6 (238-305)||(9199084-9199151)
chr6 (289-336)||(11462617-11462664)
chr6 (249-327)||(5041737-5041815)
chr6 (273-327)||(18682401-18682455)
chr6 (274-308)||(25318092-25318126)
chr6 (274-308)||(26205586-26205620)
chr6 (253-303)||(29055763-29055813)
chr6 (263-308)||(333532-333577)
chr6 (265-306)||(5085885-5085926)
chr6 (263-308)||(17079048-17079093)
chr6 (252-337)||(17573501-17573586)
chr6 (253-306)||(23065894-23065947)
chr6 (238-304)||(11060694-11060757)
chr6 (263-303)||(25350466-25350506)
[»] chr2 (18 HSPs)
chr2 (1-335)||(28252931-28253265)
chr2 (192-362)||(41207200-41207370)
chr2 (1-333)||(12645749-12646081)
chr2 (75-335)||(40176879-40177139)
chr2 (1-137)||(14440155-14440289)
chr2 (1-101)||(33515802-33515902)
chr2 (253-308)||(36804150-36804205)
chr2 (263-303)||(18844490-18844530)
chr2 (253-308)||(36804365-36804420)
chr2 (274-333)||(38604247-38604306)
chr2 (274-308)||(22052865-22052899)
chr2 (264-314)||(44547706-44547756)
chr2 (263-300)||(12808007-12808044)
chr2 (252-333)||(14439959-14440040)
chr2 (263-303)||(16315632-16315672)
chr2 (263-303)||(18489051-18489091)
chr2 (263-331)||(31093468-31093536)
chr2 (252-308)||(33276209-33276265)
[»] scaffold1350 (1 HSPs)
scaffold1350 (4-89)||(1-86)
[»] scaffold0179 (2 HSPs)
scaffold0179 (238-308)||(7766-7836)
scaffold0179 (238-308)||(12700-12770)
[»] scaffold0112 (1 HSPs)
scaffold0112 (238-308)||(15482-15552)
[»] scaffold0007 (1 HSPs)
scaffold0007 (263-308)||(182367-182412)
[»] scaffold0555 (1 HSPs)
scaffold0555 (265-303)||(7911-7949)
[»] scaffold0043 (1 HSPs)
scaffold0043 (265-303)||(34468-34506)


Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 8300348 - 8299973
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8300348 tgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgggtcttgtgttaggaggagagtgggagatg 8300249  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8300248 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 8300149  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8300148 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 8300049  T
Q  301 agggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8300048 agggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 8299973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 7924931 - 7924556
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||| ||||||||||||| ||||||||||| ||||||||||||| |||    
T  7924931 tgttcttcgtggtggagggagattgtgaggattagagatgggatacgtgagggtggagagggatggtttgggtcttgtgttacgaggagagtgggacatg 7924832  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    ||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  7924831 gggcacatactgattttgggcgtgattgttggtgtggagatgtccctctttgtgtccggtttatgcgcctttttgacttgactgttcacaaatcaatctc 7924732  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7924731 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgt 7924632  T
Q  301 agggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 376  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7924631 agggctttgttactaacagtttctttgcaggactcagtgttagacagatggctctggttacctaatcatgatgatg 7924556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 41664963 - 41665329
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    |||||||||||||||| |||||| ||||||||| ||||||||||| |||||||||| ||||| ||||||| | | |||||||||||||| ||||||||||    
T  41664963 tgttcttcgtggtggatggagatagtgaggattagagatgggatatgtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatg 41665062  T
Q  101 gggcagatactgatttt-tggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 199  Q
    | ||||| ||||||||| ||||||||| |||||||  ||||||||||| | |||| |||||||||||||||||||||||||  |||| ||| |||||| |    
T  41665063 gtgcagacactgattttttggcgtgatcgttggtgcagagatgttcctttgtgtgaccggtttaggcgcctttttgacttgaatgttaacagatcaattt 41665162  T
Q  200 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 299  Q
    ||||||||||||||||| || |||||||||||||||| ||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41665163 cagttaggaatatgttcttgttgggggtggatgtgggtggggaggtgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtg 41665262  T
Q  300 tagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaat 366  Q
    ||||| ||| ||||||||||||||||| ||||||||||||  ||||||||| || ||||||||||||    
T  41665263 tagggttttattactaacagtttctttacaggaatcagtgacagacagatgactttggttacctaat 41665329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 32267107 - 32266732
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||| ||||||||||||||||| || |||||| |||||||||||||||||||||| ||||| ||||||| |||||||||||||||||  ||||||||||    
T  32267107 tgttcgtcgtggtggagggagatagtaaggattagagatgggataggtgagggtggagaggggtggtttgggtcttgtgttaggaggaaggtgggagatg 32267008  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    | || |||||||||||||||||  |||||||||| ||||||||||| || ||||  |||||   ||| ||||||||||||  ||||||||||||||||||    
T  32267007 gtgcggatactgatttttggcggtattgttggtgcggagatgttccactgtgtgctcggttagagcgtctttttgacttgagtgttcacaaatcaatctc 32266908  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
     ||||| ||  | ||| || | |||||||||||||| |||||||||||| |||||||| || |||||||||| |||||||||||||||||||||||||||    
T  32266907 cgttagaaactttttcttgttcggggtggatgtgggtggggaggcgttgcggtggcgtaggaggttgtgggcctgggaggaggagttggtagaggagtgt 32266808  T
Q  301 agggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 376  Q
    |||||||| || |||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||    
T  32266807 agggctttattgctaacagtttctttgcaggaatcagtgtcagacagatggctttgggtacctaatcatgatgatg 32266732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 9923146 - 9922771
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    |||||||| |||||||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| |||||||| |    
T  9923146 tgttcttcatggtggagggagatagtgaggattagagatgggataggtgagggtggagagggttggtttgggtcttgtgttaggaggagggtgggagacg 9923047  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    | ||||| || ||||||||||| |||||||||||||||||||||||  | ||||   ||||||| ||||||| ||||||| ||||  ||||| |||||||    
T  9923046 gtgcagagacagatttttggcgggattgttggtgtggagatgttccattgtgtgaatggtttagtcgcctttatgacttgactgtgaacaaaccaatctc 9922947  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
     |||||||| |||||| || ||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |    
T  9922946 tgttaggaacatgttcttgttgggggtggatgtcggtggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaagagttggtagaggagtct 9922847  T
Q  301 agggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 376  Q
    |||||||| |||||||||||||| |||||||||||||||  ||| |||||| | |||||||| | ||| |||||||    
T  9922846 agggctttattactaacagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaggatgatg 9922771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 85 - 368
Target Start/End: Complemental strand, 13396849 - 13396566
Alignment:
Q  85 aggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctg 184  Q
    ||||| ||||||||||| ||||| | |||||||||||||||| ||||||| ||||||||||| || |||| |||||||||||||||||||||||||  ||    
T  13396849 aggagggtgggagatggtgcagacattgatttttggcgtgatcgttggtgcggagatgttccactgtgtgaccggtttaggcgcctttttgacttgaatg 13396750  T
Q  185 ttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggagga 284  Q
    || |||||||||| |||||||||||||||||| || |||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||    
T  13396749 ttaacaaatcaatttcagttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggagga 13396650  T
Q  285 gttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatca 368  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||  |||||||||||| ||||||||||||||    
T  13396649 gttggtagaggagtgtagggttttattactaacaatttctttgcaggaatcagtgacagacagatggctttggttacctaatca 13396566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 191 - 376
Target Start/End: Complemental strand, 172458 - 172273
Alignment:
Q  191 aatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggt 290  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||    
T  172458 aatcagtctcagttaggaatatgttcctgctgagggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggcctgggaggagaagttggt 172359  T
Q  291 agaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 376  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||    
T  172358 agaggagtgtagggctttgttactaatagtttctttgcaggaatcagtgatagacagatggctatggttacctaataatgatgatg 172273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 13879082 - 13879416
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||||||||||||||||||||| || | |||| ||||||||||||| |||||||| ||||| ||||||| |  ||||||||||||||| ||||| ||||    
T  13879082 tgttcttcgtggtggagggagatagtcaagattagagatgggataggcgagggtggagagggttggtttgtggattgtgttaggaggagggtgggggatg 13879181  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
      || ||||||||||||||||| ||||||||||||||   ||||||  | ||||  || |||||||| |||| ||||||  || |  | ||||||||| |    
T  13879182 aagctgatactgatttttggcgagattgttggtgtggtagtgttccgttgtgtgagcgctttaggcgtctttatgacttagctatcgataaatcaatcac 13879281  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
     || ||||| |||||| || | |||||||| |  || ||||  |||| |  ||||||||| ||||| ||||  ||||||||||| |||||||||||||||    
T  13879282 ggtgaggaacatgttcttgttcggggtggaggatggtgggggagcgtggcagtggcgtcgccggttatgggtgtgggaggaggacttggtagaggagtgt 13879381  T
Q  301 agggctttgttactaacagtttctttgcaggaatc 335  Q
    |||||||| ||||||||||| ||||||||||||||    
T  13879382 agggctttattactaacagtctctttgcaggaatc 13879416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 25090932 - 25090598
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||||||||||||||||||||| || |||||| ||||||||||||| ||||||||  |||| ||||||  |  ||||||||||||||| ||||| ||||    
T  25090932 tgttcttcgtggtggagggagatagtcaggattagagatgggataggcgagggtggaaagggttggtttacggattgtgttaggaggagggtgggggatg 25090833  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    | |||||||||||||||||||| ||||||||||||||   ||||||  | ||||  || |||||||| |||||||||||  |     | ||||||||| |    
T  25090832 gagcagatactgatttttggcgagattgttggtgtggtagtgttccgttgtgtgagcgctttaggcgactttttgacttaaccaccaataaatcaatcac 25090733  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
     || ||||| |||||| || |||||||||| |  || ||||  |||| |  ||||||||| || || | ||  ||||||||| | |||||||||||||||    
T  25090732 ggtgaggaacatgttcttgttgggggtggaggatggtgggggagcgtggcagtggcgtcgccgtttattggtgtgggaggagaaattggtagaggagtgt 25090633  T
Q  301 agggctttgttactaacagtttctttgcaggaatc 335  Q
    |||||||| ||||||||||| ||||||||||||||    
T  25090632 agggctttattactaacagtctctttgcaggaatc 25090598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 20824844 - 20824708
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||     ||||||||||||||| ||||| ||||    
T  20824844 tgttctttgtggtggagggagattgtgaggattagagatgggataggtgagggtggggagggctggttttcaggttgtgttaggaggagggtgggggatg 20824745  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtgg 137  Q
    | || ||||| ||||||||||||||||||||||||||    
T  20824744 gagctgataccgatttttggcgtgattgttggtgtgg 20824708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 17700022 - 17699889
Alignment:
Q  4 tcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatgggg 103  Q
    |||||| ||||||||||||| || |||||| |||||||||||||||||||||| ||||| |||||||    ||||||||||||||| ||||| ||||| |    
T  17700022 tcttcgcggtggagggagatagttaggattagagatgggataggtgagggtggggagggctggtttgcaggttgtgttaggaggagggtgggggatggag 17699923  T
Q  104 cagatactgatttttggcgtgattgttggtgtgg 137  Q
    | ||||||||||||||||| ||||||||||||||    
T  17699922 ccgatactgatttttggcgagattgttggtgtgg 17699889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 172634 - 172716
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttag 83  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  172634 tgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggagagggatggtttgggtcttgtgttag 172716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 43270997 - 43270861
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||||||||||||||||||||| || |||||| ||||||||||||| |||||||| ||||| |||||||    ||||||||||||||| || || ||||    
T  43270997 tgttcttcgtggtggagggagatagttaggattagagatgggataggcgagggtggggagggctggtttgcaggttgtgttaggaggagggtaggggatg 43270898  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtgg 137  Q
    | || ||||| ||||||||||  || |||||||||||    
T  43270897 gagccgataccgatttttggccagactgttggtgtgg 43270861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 42177147 - 42177280
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||||||||||||||||||||| || |||||| ||||||||||||| ||||||||   ||  ||||||| |  ||||||||||||||| ||||| ||||    
T  42177147 tgttcttcgtggtggagggagatagtcaggattagagatgggataggcgagggtgg---ggattggtttgcgggttgtgttaggaggagggtgggggatg 42177243  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtgg 137  Q
    |||| || |  ||||||||||| ||||||||||||||    
T  42177244 gggccgaaatcgatttttggcgagattgttggtgtgg 42177280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 264 - 308
Target Start/End: Complemental strand, 12134610 - 12134566
Alignment:
Q  264 gttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 308  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||    
T  12134610 gttgtgggcgtgggaggaggacttggtagaggagtgtagggcttt 12134566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 303
Target Start/End: Original strand, 28993075 - 28993126
Alignment:
Q  252 gtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 303  Q
    ||||||||||||||||||| ||||||||||||||||| ||| | ||||||||    
T  28993075 gtggcgtcggcggttgtggacttgggaggaggagttgttagggaagtgtagg 28993126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 304
Target Start/End: Complemental strand, 17659139 - 17659073
Alignment:
Q  238 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtaggg 304  Q
    |||||||||| || |||| |  || |||||||||||||||||||||||  | |||||||||||||||    
T  17659139 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtaggg 17659073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 308
Target Start/End: Complemental strand, 23680470 - 23680400
Alignment:
Q  238 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 308  Q
    |||||||||| || |||| |  || ||||||||| |||||||||||||  | |||||||||||||||||||    
T  23680470 ggggaggcgtggaagtggaggagggggttgtgggtttgggaggaggaggagttagaggagtgtagggcttt 23680400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 333
Target Start/End: Complemental strand, 2170636 - 2170555
Alignment:
Q  252 gtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 333  Q
    ||||||||| || || ||||  ||||||||||| ||| |||  |||||||||| ||| ||||||||||| |||||| |||||    
T  2170636 gtggcgtcgtcgtttatgggtatgggaggaggaattgctagtagagtgtagggatttattactaacagtctctttgtaggaa 2170555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 315
Target Start/End: Complemental strand, 13200337 - 13200296
Alignment:
Q  274 tgggaggaggagttggtagaggagtgtagggctttgttacta 315  Q
    |||||||||||||||||||||||||||| || ||| ||||||    
T  13200337 tgggaggaggagttggtagaggagtgtatggatttattacta 13200296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 337
Target Start/End: Complemental strand, 20824590 - 20824505
Alignment:
Q  252 gtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcag 337  Q
    ||||||||| || || ||||  ||||||||||| ||| |||  |||||||||| ||| ||||| |||||  |||||||||||||||    
T  20824590 gtggcgtcgtcgtttatgggtatgggaggaggaattgttagtagagtgtagggatttattactgacagtcactttgcaggaatcag 20824505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 337
Target Start/End: Original strand, 42177471 - 42177520
Alignment:
Q  288 ggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcag 337  Q
    |||||| |||||||||| ||| ||||||| ||| ||||||||||||||||    
T  42177471 ggtagaagagtgtagggatttattactaatagtctctttgcaggaatcag 42177520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 25193372 - 25193332
Alignment:
Q  263 ggttgtgggcttgggaggaggagttggtagaggagtgtagg 303  Q
    ||||||||||  |||||||||||||||| ||||||||||||    
T  25193372 ggttgtgggcgcgggaggaggagttggtggaggagtgtagg 25193332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 35541594 - 35541219
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  35541594 tgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggcgagggatggtttgggtcttgtgttaggaggagagtgggagatg 35541495  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35541494 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 35541395  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35541394 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 35541295  T
Q  301 agggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 376  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35541294 agggctttgttactaacagtttttttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 35541219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 6051148 - 6050773
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  6051148 tgttcttcgtggtggagggagattgtgaggattagagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatg 6051049  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6051048 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgactgttcacaaatcaatctc 6050949  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6050948 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgt 6050849  T
Q  301 agggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 376  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6050848 agggctttgttactaacagtttctttgcaggactcagtgttagacagatggctctggttacctaatcatgatgatg 6050773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 6 - 376
Target Start/End: Original strand, 11908705 - 11909075
Alignment:
Q  6 ttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatggggca 105  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||| | | |||||||||||||| ||||||||||| |||    
T  11908705 ttcgtggtggagggagattgtgaggattagagatgggataggtgagggtggagagggttggtttgggacatgtgttaggaggagggtgggagatggtgca 11908804  T
Q  106 gatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctcagtta 205  Q
    |||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11908805 gatactgatttttgacgtgattgttggtgtggagatgttcctttgtgtgtccggtttaggcgcctttttgacttgactgttcacaaatcaatctcagtta 11908904  T
Q  206 ggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggc 305  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11908905 ggaatatgttcatgatgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggc 11909004  T
Q  306 tttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 376  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11909005 tttgttactaacagtttctttgcaggaatcagtgatagacagatggctctggttacctaatcatgatgatg 11909075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 47622672 - 47623006
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    |||||||| |||||||| ||||| ||||||||| |||||||||||   |||| ||| ||||| ||||||  |  ||||||||||||||| ||||| ||||    
T  47622672 tgttcttcttggtggagagagatagtgaggattagagatgggataaacgaggatggggagggttggttttcggattgtgttaggaggagggtgggggatg 47622771  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    |  | ||||||||||||||||| |||||||||||||| ||||||||  || |||  || ||||| || || | | | ||| | ||  |||||  |||| |    
T  47622772 gttccgatactgatttttggcgggattgttggtgtggtgatgttccgtttcgtgagcgctttagacggctatataatttggccgtcaacaaagtaatcac 47622871  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
      ||| || ||||||  || |||||||||| || || || |||| || |  ||||||||| ||||| ||||| |||||||||||  ||||||||||||||    
T  47622872 gattatgactatgtttttgttgggggtggaggttggtggtgaggtgtggtagtggcgtcgtcggttatgggcgtgggaggaggacctggtagaggagtgt 47622971  T
Q  301 agggctttgttactaacagtttctttgcaggaatc 335  Q
    | |||||| ||||| |||| || ||||||||||||    
T  47622972 aaggctttattactgacagcttttttgcaggaatc 47623006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 43388903 - 43388774
Alignment:
Q  8 cgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatggggcaga 107  Q
    |||||||||||||||| ||||||||| |||||||||||||||| ||||| ||||| ||||||     ||||||||||||||| ||||| ||||| || ||    
T  43388903 cgtggtggagggagattgtgaggattagagatgggataggtgatggtggggagggctggtttacaagttgtgttaggaggagggtgggggatggagctga 43388804  T
Q  108 tactgatttttggcgtgattgttggtgtgg 137  Q
    | ||||||||||||| ||||||||||||||    
T  43388803 tgctgatttttggcgagattgttggtgtgg 43388774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 109 - 329
Target Start/End: Complemental strand, 2491649 - 2491429
Alignment:
Q  109 actgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctcagttagga 208  Q
    ||||| || |||||||||||||||||||||||||||||  ||||||| || ||||| ||  ||||||  ||| | ||| |||||    || | ||||||     
T  2491649 actgacttctggcgtgattgttggtgtggagatgttccgttttgtgtgcgatttagacggttttttgttttgacagttaacaaagttgtcacggttaggt 2491550  T
Q  209 atatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 308  Q
    ||||||||| | |||| ||||| |  || |||| ||||| |  ||||||||| || ||||||||||||||||| ||||||||||||||||||||||   |    
T  2491549 atatgttccagttgggtgtggaggctggtgggggggcgtggcagtggcgtcgtcgtttgtgggcttgggaggaagagttggtagaggagtgtagggtact 2491450  T
Q  309 gttactaacagtttctttgca 329  Q
     ||||| |||||| |||||||    
T  2491449 attacttacagttactttgca 2491429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 328 - 376
Target Start/End: Complemental strand, 51052698 - 51052650
Alignment:
Q  328 caggaatcagtgttagacagatggctctggttacctaatcatgatgatg 376  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  51052698 caggaatcagtgatagacagatggctctggttacctaatcatgatgatg 51052650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 252 - 303
Target Start/End: Original strand, 22191627 - 22191678
Alignment:
Q  252 gtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 303  Q
    ||||||| ||||||||||||| ||||||||||||||||||| ||||||||||    
T  22191627 gtggcgtaggcggttgtgggcatgggaggaggagttggtaggggagtgtagg 22191678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 303
Target Start/End: Complemental strand, 3074043 - 3073993
Alignment:
Q  253 tggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 303  Q
    |||||| ||||||||||||| ||||||||||||||| ||| ||||||||||    
T  3074043 tggcgtaggcggttgtgggcctgggaggaggagttgttaggggagtgtagg 3073993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 303
Target Start/End: Complemental strand, 21405146 - 21405081
Alignment:
Q  238 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 303  Q
    |||||||||| |  ||||||| ||||||||||||| || |||||||||||| ||| ||||||||||    
T  21405146 ggggaggcgtggcagtggcgtaggcggttgtgggcatgagaggaggagttgttaggggagtgtagg 21405081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 30110757 - 30110826
Alignment:
Q  238 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctt 307  Q
    |||||||||| || |||| |  || |||||||||||||||||||||||  | ||||||||||||||||||    
T  30110757 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggctt 30110826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 305
Target Start/End: Complemental strand, 17708287 - 17708220
Alignment:
Q  238 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggc 305  Q
    |||||||||| || |||| |  || |||||||||||||||||||||||  | ||||||||||||||||    
T  17708287 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggc 17708220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 308
Target Start/End: Original strand, 47106538 - 47106583
Alignment:
Q  263 ggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 308  Q
    |||| ||||||||||||||||||  | |||||||||||||||||||    
T  47106538 ggttatgggcttgggaggaggaggagttagaggagtgtagggcttt 47106583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 52691755 - 52691715
Alignment:
Q  263 ggttgtgggcttgggaggaggagttggtagaggagtgtagg 303  Q
    |||| ||||| ||||||||||||||||| ||||||||||||    
T  52691755 ggttatgggcgtgggaggaggagttggtggaggagtgtagg 52691715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 105438 - 105813
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  105438 tgttcttcgtggtggagggagattgtgaggattagagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatg 105537  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  105538 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgactgttcacaaatcaatctc 105637  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  105638 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgt 105737  T
Q  301 agggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 376  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  105738 agggctttgttactaacagtttctttgcaggactcagtgttagacagatggctctggttacctaatcatgatgatg 105813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 4937723 - 4938098
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  4937723 tgttcttcgtggtggagggagattgtgaggattagagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatg 4937822  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4937823 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgactgttcacaaatcaatctc 4937922  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4937923 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgt 4938022  T
Q  301 agggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 376  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4938023 agggctttgttactaacagtttctttgcaggactcagtgttagacagatggctctggttacctaatcatgatgatg 4938098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 11276843 - 11277222
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| ||||||||||    
T  11276843 tgttcgtcgtggtggagggagatagtgaggattagagatgggataggtgagggtggagaggggtggtttgggtcttgtgttaggaggagggtgggagatg 11276942  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgc----ctttttgacttgtctgttcacaaatcaa 196  Q
    | |||||||| ||||||||| ||||| ||||||| ||||||||||| || |||| ||||||| ||||     ||||||||||||  |||  |||||||||    
T  11276943 gtgcagataccgatttttggtgtgatcgttggtgcggagatgttccactgtgtgcccggtttgggcgtgcgtctttttgacttgaatgtagacaaatcaa 11277042  T
Q  197 tctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagagga 296  Q
    |||||||||||||||||||| || |||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  11277043 tctcagttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagagga 11277142  T
Q  297 gtgtagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 376  Q
    |||||||||||| || |||||||||||||||||||||||||||  |||||||||||| ||| ||||||||||||||||||    
T  11277143 gtgtagggctttattgctaacagtttctttgcaggaatcagtgacagacagatggctttgggtacctaatcatgatgatg 11277222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 47877528 - 47877156
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||| || |||||||||| | | |||||||||| ||| |||||||| |    
T  47877528 tgttcttcgtggtggagggagatagtgaggattagagatgggataggcgagggtggagatggatggtttgggacgtgtgttaggatgagggtgggagacg 47877429  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    | ||| | || ||||||||||||||| ||||||| ||||||||||| || || | ||| ||||| ||||||| ||||||| ||||| |||||||||||||    
T  47877428 gtgcataaacagatttttggcgtgatcgttggtgcggagatgttccactgtgcgaccgttttagtcgcctttatgacttgactgttaacaaatcaatctc 47877329  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
    |||||||||||||||| || |||||||||| ||||| |||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  47877328 agttaggaatatgttcttgttgggggtggacgtgggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaagagttggtagaggagtgt 47877229  T
Q  301 agggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatg 373  Q
     ||| ||| |||||||||||||| |||||||||||||||  ||||||||| || |||||||||||||| ||||    
T  47877228 ggggttttattactaacagtttccttgcaggaatcagtgacagacagatgactttggttacctaatcaggatg 47877156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 29968519 - 29968144
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||| |||| |||||||||||||||||  ||||||||||    
T  29968519 tgttcgtcgtggtggagggagatagtgaggattagagatgggataggtgagggtggagagggatgatttgggtcttgtgttaggaggaaggtgggagatg 29968420  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    | || ||||| |||||||||||  |||||||||| |||||||||||  | ||||  |||||| || | ||||||||||||  ||||||||||||||||||    
T  29968419 gtgcggataccgatttttggcggaattgttggtgcggagatgttccattgtgtgctcggtttgggagtctttttgacttgagtgttcacaaatcaatctc 29968320  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
     ||||| ||  | ||| || |||||||||||||||| |||||||||||| |||||||| || |||| |||||||| |||||||| |||||||||||||||    
T  29968319 cgttagaaactttttcttgttgggggtggatgtgggtggggaggcgttgcggtggcgtaggaggttatgggcttgagaggaggaattggtagaggagtgt 29968220  T
Q  301 agggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 376  Q
    |||||||| || |||||||||||||||||||||||||||  |||||||||||| ||| ||||||||||||||||||    
T  29968219 agggctttattgctaacagtttctttgcaggaatcagtgacagacagatggctttgggtacctaatcatgatgatg 29968144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 17721180 - 17720805
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    |||||||| |||||||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| |||||||| |    
T  17721180 tgttcttcatggtggagggagatagtgaggattagagatgggataggtgagggtggagagggttggtttgggtcttgtgttaggaggagggtgggagacg 17721081  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    | ||||| || ||||||||| | ||||||||||||||||||||| |  | ||||  |||||||| ||||||| ||||||| ||||  |||||  ||||||    
T  17721080 gtgcagagacagatttttggtgggattgttggtgtggagatgtttcattgtgtgaacggtttagtcgcctttatgacttgactgtgaacaaactaatctc 17720981  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
     |||||||| ||| || || ||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |    
T  17720980 tgttaggaacatgatcttgttgggggtggatgtcggtggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaagagttggtagaggagttt 17720881  T
Q  301 agggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 376  Q
    | |||||| |||||||||||||| |||||||||||||||  ||| |||||| | |||||||| | ||| |||||||    
T  17720880 anggctttattactaacagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaggatgatg 17720805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 235033 - 235404
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||| ||||| || |||| | | |||||||||||||| ||||||||      
T  235033 tgttcttcgtggtggagggagatagtgaggattagagatgggataggcgagggtggagagggctgatttgggacgtgtgttaggaggagggtgggagaca 235132  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    |  || | || ||||||||||||||| ||||||| ||||||||||| || |||| ||| ||||| ||||||| ||||||| ||||| |||||||||||||    
T  235133 gtacaaaaacagatttttggcgtgatcgttggtgcggagatgttccactgtgtgaccgttttagtcgcctttatgacttggctgttaacaaatcaatctc 235232  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
    ||||| |||||||||| || ||||| |||| ||||| |||||||||||| ||||||||| ||| |||||||||||||||||  |||||||||||||||||    
T  235233 agttatgaatatgttcttgttgggg-tggacgtgggtggggaggcgttgcggtggcgtcagcgattgtgggcttgggaggaaaagttggtagaggagtgt 235331  T
Q  301 agggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatg 373  Q
    |||| ||| |||||||||||||| || ||||||||||||  ||| ||||| || |||||||| ||||| ||||    
T  235332 agggttttattactaacagtttccttacaggaatcagtgacagatagatgactttggttaccaaatcaggatg 235404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 160 - 365
Target Start/End: Complemental strand, 37919930 - 37919725
Alignment:
Q  160 tttaggcgcctttttgacttgtctgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtc 259  Q
    |||||||||||||||||||||  |||| | |||||||| |||||||| ||||||||| || |||||||||||||||| |||| || |||| ||||||||     
T  37919930 tttaggcgcctttttgacttgaatgttaaaaaatcaatttcagttagaaatatgttcttgttgggggtggatgtgggtgggggggtgttgcggtggcgta 37919831  T
Q  260 ggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggtt 359  Q
    ||||||||||||||||||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||  | ||| |||||| || ||    
T  37919830 ggcggttgtgggcttgggaggagaagttggtagaggagtgtagagttttattactaacagtttctttgcaggaatcagtgacaaacatatggctttgatt 37919731  T
Q  360 acctaa 365  Q
    ||||||    
T  37919730 acctaa 37919725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 31423147 - 31423011
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||||||||||| ||||||||| || |||||| ||||||||||||| |||||||| ||||||||||||| |  ||||||||||||||| ||||  ||||    
T  31423147 tgttcttcgtggttgagggagatagtcaggattagagatgggataggcgagggtggggagggatggtttgcgggttgtgttaggaggagggtggaggatg 31423048  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtgg 137  Q
    |    || || ||||||||||| ||||||||||||||    
T  31423047 gaattgaaacggatttttggcgagattgttggtgtgg 31423011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 37255303 - 37254970
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||| ||||| ||||||||||| || |||||| |||||| |||||| |||||||  ||| | ||||||| |  ||||||||||||||| ||||| ||||    
T  37255303 tgttcatcgtgatggagggagatagtcaggattagagatgagataggcgagggtgaggagagttggtttgcgggttgtgttaggaggagggtgggggatg 37255204  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    | || || || ||||||||||| ||||||||||| ||   |||||| || ||||  || |||||||| || | ||| ||  ||||  | |||  |||| |    
T  37255203 gagccgaaaccgatttttggcgagattgttggtgcggtagtgttccgctgtgtgagcgctttaggcggctatatgatttagctgtcaataaagtaatcac 37255104  T
Q  201 agttaggaatatgttcctgct-gggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 299  Q
     || ||||| |||||| || | ||||||||| |  || |||| ||||| |  |||||| || ||||| ||||  ||||||||||| |||||||| |||||    
T  37255103 ggtgaggaacatgttcttgttggggggtggaggatggtgggg-ggcgtggcagtggcgccgtcggttatgggtgtgggaggaggacttggtagaagagtg 37255005  T
Q  300 tagggctttgttactaacagtttctttgcaggaat 334  Q
    ||||| ||| |||||||||   |||||||||||||    
T  37255004 tagggatttattactaacaaactctttgcaggaat 37254970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 238 - 305
Target Start/End: Complemental strand, 34232007 - 34231940
Alignment:
Q  238 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggc 305  Q
    ||||||||||||| |||| || || |||||||||| ||||||||||||  | ||||||||||||||||    
T  34232007 ggggaggcgttgaagtggagtaggaggttgtgggcctgggaggaggaggagttagaggagtgtagggc 34231940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 332
Target Start/End: Complemental strand, 36363829 - 36363738
Alignment:
Q  241 gaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcagga 332  Q
    ||||||| |||||||||||   | |||||||  |||||||| ||| || |||||||||||||||| || ||||| || ||||||||||||||    
T  36363829 gaggcgtggaggtggcgtcatagtttgtgggtgtgggaggaagagctgctagaggagtgtagggcattattacttactgtttctttgcagga 36363738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 303
Target Start/End: Complemental strand, 17055837 - 17055772
Alignment:
Q  238 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 303  Q
    |||||||||| |  ||||||| ||||||||||||| || |||||||||||| ||| ||||||||||    
T  17055837 ggggaggcgtggcagtggcgtaggcggttgtgggcatgagaggaggagttgttaggggagtgtagg 17055772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 337
Target Start/End: Complemental strand, 25619737 - 25619674
Alignment:
Q  274 tgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcag 337  Q
    |||||||||||  ||||||| ||||||| || ||| ||||||||||  ||||||||||||||||    
T  25619737 tgggaggaggacctggtagaagagtgtaaggatttattactaacagactctttgcaggaatcag 25619674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 308
Target Start/End: Complemental strand, 4077583 - 4077513
Alignment:
Q  238 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 308  Q
    |||||||||| || |||| |  || ||||||||||||||||||| |||  | |||||||||||||||||||    
T  4077583 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaagaggagttagaggagtgtagggcttt 4077513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 22819564 - 22819614
Alignment:
Q  253 tggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 303  Q
    |||||| || |||||||||| ||||||||||||||| ||| ||||||||||    
T  22819564 tggcgtaggaggttgtgggcctgggaggaggagttgttaggggagtgtagg 22819614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 308
Target Start/End: Original strand, 27218952 - 27219022
Alignment:
Q  238 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 308  Q
    |||||||||| |  ||||||| | || ||||||| |||||| |||||| ||||||||||||||||| ||||    
T  27218952 ggggaggcgtgggtgtggcgtagacgattgtgggtttgggaagaggagatggtagaggagtgtaggtcttt 27219022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 297
Target Start/End: Original strand, 27854299 - 27854333
Alignment:
Q  263 ggttgtgggcttgggaggaggagttggtagaggag 297  Q
    ||||||||||||||||||| |||||||||||||||    
T  27854299 ggttgtgggcttgggaggaagagttggtagaggag 27854333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 303
Target Start/End: Original strand, 28173835 - 28173873
Alignment:
Q  265 ttgtgggcttgggaggaggagttggtagaggagtgtagg 303  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  28173835 ttgtgggcgtgggaggaggagttggtagcggagtgtagg 28173873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 336
Target Start/End: Complemental strand, 31422876 - 31422814
Alignment:
Q  274 tgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatca 336  Q
    |||||||| || |||||||||||||||| |  ||| ||||||||||  |||||||||||||||    
T  31422876 tgggaggatgacttggtagaggagtgtatgaatttattactaacagactctttgcaggaatca 31422814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 308
Target Start/End: Complemental strand, 45943123 - 45943089
Alignment:
Q  274 tgggaggaggagttggtagaggagtgtagggcttt 308  Q
    ||||||||||||||| |||||||||||||||||||    
T  45943123 tgggaggaggagttgctagaggagtgtagggcttt 45943089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 11339030 - 11338990
Alignment:
Q  263 ggttgtgggcttgggaggaggagttggtagaggagtgtagg 303  Q
    |||||||||| |||||||||||  |||||||||||||||||    
T  11339030 ggttgtgggcgtgggaggaggaaatggtagaggagtgtagg 11338990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 301
Target Start/End: Original strand, 27941353 - 27941389
Alignment:
Q  265 ttgtgggcttgggaggaggagttggtagaggagtgta 301  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  27941353 ttgtgggcgtgggaggaggagttgttagaggagtgta 27941389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 23642186 - 23642561
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  23642186 tgttcttcgtggtggagggagattgtgaggattagagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatg 23642285  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  23642286 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgactgttcacaaatcaatctc 23642385  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23642386 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgt 23642485  T
Q  301 agggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 376  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23642486 agggctttgttactaacagtttctttgcaggactcagtgttagacagatggctctggttacctaatcatgatgatg 23642561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 47419349 - 47418982
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  47419349 tgttcttcgtggtggagggagattgtgaggattagagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatg 47419250  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||| ||||||||    
T  47419249 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttccgcgcctttttggcttgtctgttcacaattcaatctc 47419150  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  47419149 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggaggtggtagaggagtgt 47419050  T
Q  301 agggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatca 368  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  47419049 agggctttgttactaacaatttctttgcaggattcagtgttagatagatggctctggttacctaatca 47418982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 19755812 - 19755445
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||| |   |||||||||||||| ||||||||||    
T  19755812 tgttcttcgtggtggagggagatagtgaggattagagatgggataggtgagggtggagagggatggtttgggatgtgtgttaggaggagggtgggagatg 19755713  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    | ||||| || ||||||||||||||| ||||||| ||||||||||| || |||| |||||||||||||||||||||||||  |||| |||||||||| ||    
T  19755712 gtgcagacaccgatttttggcgtgatcgttggtgcggagatgttccactgtgtgaccggtttaggcgcctttttgacttgaatgttaacaaatcaatttc 19755613  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
    | |||||||||||||| || |||||||||||||||| |||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  19755612 atttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcgtaggcggttgtgggcttaggaggaggagttggtagaggagtgt 19755513  T
Q  301 agggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatca 368  Q
    |||| ||| ||||||| ||||||||||||||||||||||  |||||||||||| ||||||||||||||    
T  19755512 agggttttattactaatagtttctttgcaggaatcagtgacagacagatggctttggttacctaatca 19755445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 19783994 - 19784361
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||| |   |||||||||||||| ||||||||||    
T  19783994 tgttcttcgtggtggagggagatagtgaggattagagatgggataggtgagggtggagagggatggtttgggatgtgtgttaggaggagggtgggagatg 19784093  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    | ||||| || ||||||||||||||| ||||||| ||||||||||| || |||| |||||||||||||||||||||||||  |||| |||||||||| ||    
T  19784094 gtgcagacaccgatttttggcgtgatcgttggtgcggagatgttccactgtgtgaccggtttaggcgcctttttgacttgaatgttaacaaatcaatttc 19784193  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
    | |||||||||||||| || |||||||||||||||| |||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  19784194 atttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcgtaggcggttgtgggcttaggaggaggagttggtagaggagtgt 19784293  T
Q  301 agggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatca 368  Q
    |||| ||| ||||||| ||||||||||||||||||||||  |||||||||||| ||||||||||||||    
T  19784294 agggttttattactaatagtttctttgcaggaatcagtgacagacagatggctttggttacctaatca 19784361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 15740765 - 15740394
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    |||||||| |||||| ||||||| |||||||||  ||||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| ||||||||||    
T  15740765 tgttcttcatggtggcgggagatagtgaggattaaagatgagataggtgagggtggagagggatggtttgggtcttgtgt-aggaggagggtgggagatg 15740667  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    | |||||||||||||||||||||||| ||||||| ||||||||||| || |||| ||||||| |||| ||||||||||||  ||||||||||||||||||    
T  15740666 gtgcagatactgatttttggcgtgatcgttggtgcggagatgttccactgtgtgcccggtttgggcgtctttttgacttgaatgttcacaaatcaatctc 15740567  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
     ||||||||||| ||| || ||||||| || ||||| ||||||||||||  ||||| | |||||||||||||||||||||||||||||||||||||||||    
T  15740566 tgttaggaatatattcttgttgggggtagacgtgggaggggaggcgttgcagtggcataggcggttgtgggcttgggaggaggagttggtagaggagtgt 15740467  T
Q  301 agggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatg 373  Q
    |||||||| ||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||    
T  15740466 agggctttattactaacagtttctttgcaggaatcagtgacagacagatggctttggttacctaatcatgatg 15740394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 1828135 - 1828507
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    |||||||| |||||| ||||||| ||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||    
T  1828135 tgttcttcttggtggcgggagatagtgaggattagagatgggataggtgagggtggtgagggatggtttgggtcttgtgttaggaggagggtgggagatg 1828234  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    | ||||| ||||| |||||||||||| ||||||| ||||||| ||| || |||| ||||||| |||| ||||||||||||  | |||||||||| |||||    
T  1828235 gtgcagacactgacttttggcgtgatcgttggtgcggagatgctcccctgtgtgcccggtttgggcgtctttttgacttgagtattcacaaatctatctc 1828334  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
     ||||||||||||||| || ||||||| || ||||| |||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||     
T  1828335 tgttaggaatatgttcttgttgggggtagacgtgggaggggaggcgttgtggtggcataggcggttgtgggcttgggaggaggagttggtagaggagtgg 1828434  T
Q  301 agggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatg 373  Q
    |||||||| ||||||||||||||||||||||| ||||||   |||| |||||| |||||||||||||||||||    
T  1828435 agggctttattactaacagtttctttgcaggattcagtgactgacaaatggctttggttacctaatcatgatg 1828507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 196 - 376
Target Start/End: Original strand, 47685685 - 47685865
Alignment:
Q  196 atctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagagg 295  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  47685685 atctcagttaggaatatgttcttgttgggggtggatgtgggcggggaggcattgaggtggcgtgggcggctgtgggcttgggaggaggagttggtagagg 47685784  T
Q  296 agtgtagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 376  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||    
T  47685785 agtgtagggctttgttactaacagtttctttgcaggaatcggtgatagacagatggctttggttacctaatcatgatgatg 47685865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 54482754 - 54483088
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||||||||||||||||||||| || |||||| ||||||||||||| |||||||| ||| | ||||||| |  ||||||||||||||| ||||| ||||    
T  54482754 tgttcttcgtggtggagggagatagtcaggattagagatgggataggcgagggtggagagagttggtttgtggattgtgttaggaggagggtgggggatg 54482853  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    | || ||||| ||||||||||| ||||||||||||||   ||||||  | ||||  || |||||||  |||| ||||||  |  |  | ||||||||  |    
T  54482854 gagctgataccgatttttggcgagattgttggtgtggtagtgttcccttgtgtgagcgctttaggcatctttatgacttagccatcaataaatcaattac 54482953  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
     || ||||| |||||| || |||||||||| |  || ||||  |||| |  ||||||||| ||||| ||||  ||||||||||| |||||||||||||||    
T  54482954 ggtgaggaacatgttcttgttgggggtggaggatggtgggggagcgtggcagtggcgtcgccggttatgggtgtgggaggaggatttggtagaggagtgt 54483053  T
Q  301 agggctttgttactaacagtttctttgcaggaatc 335  Q
    |||| ||| ||||||||||| ||||||||||||||    
T  54483054 aggggtttattactaacagtctctttgcaggaatc 54483088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 48312639 - 48312307
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||||||||||||||||||||| || |||||| |||||| |||||| |||||||| ||||| ||||||| |  ||||||||||||||| ||||| ||||    
T  48312639 tgttcttcgtggtggagggagatagtcaggattagagatgagataggcgagggtggagagggttggtttgtggattgtgttaggaggagggtgggggatg 48312540  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    | || ||||  ||||||||||| ||||||||||||||  |||||||  | ||||  || |||||||| |||| ||||||  |  |  | ||||||||| |    
T  48312539 gagctgatatcgatttttggcgagattgttggtgtgg-tatgttccgttgtgtgagcgctttaggcgactttatgacttagccatcaataaatcaatcac 48312441  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
     || ||||| |||||| || |||||||||| |  || |||| ||||| |  ||||||||| ||||| | ||  || |||||||| |||||||||||||||    
T  48312440 ggtgaggaacatgttcttgttgggggtggaggatggtgggggggcgtggcagtggcgtcgccggttattggtgtgtgaggaggacttggtagaggagtgt 48312341  T
Q  301 agggctttgttactaacagtttctttgcaggaat 334  Q
    |||||||| ||||||||||| | |||||||||||    
T  48312340 agggctttattactaacagtctatttgcaggaat 48312307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 2821629 - 2821966
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||||||||||||||||||||| || |||||| ||||||||||||| |||||||| ||||| |||||||    ||||||||||||||| ||||| ||||    
T  2821629 tgttcttcgtggtggagggagatagtcaggattagagatgggataggcgagggtggggagggttggtttgcagattgtgttaggaggagggtgggggatg 2821728  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    | || ||||| ||||||||||| ||||||||||||||   ||||||  | ||||  || |||||||| |||| ||||||  |  |  | ||| ||||| |    
T  2821729 gagctgataccgatttttggcgagattgttggtgtggtagtgttccgttgtgtgagcgctttaggcgtctttatgacttagccatcaataaagcaatcac 2821828  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggagg---agttggtagaggag 297  Q
     || ||||| |||||| || |||||||||| |  || ||||  |||| | |||||||||| || || ||||  ||||||||||   | ||||||||||||    
T  2821829 ggtaaggaacatgttcttgttgggggtggaggatggtgggggagcgtggtggtggcgtcgccgcttatgggtgtgggaggaggaccaattggtagaggag 2821928  T
Q  298 tgtagggctttgttactaacagtttctttgcaggaatc 335  Q
    |||||||||||  |||||||||| ||||||||||||||    
T  2821929 tgtagggctttaatactaacagtctctttgcaggaatc 2821966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 23647844 - 23647939
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtggga 96  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  23647844 tgttcttcgtggtggagggagattgtgaggattagagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtggga 23647939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 5789687 - 5790021
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    |||||||| |||||| ||||||| |||| |||| ||||||||||||| |||||||| ||||||||||||| ||| |||||||| ||||| ||| | ||||    
T  5789687 tgttcttcttggtggcgggagattgtgaagattagagatgggataggcgagggtggggagggatggtttgcgtcgtgtgttagtaggagggtgcgggatg 5789786  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    | ||  ||| |||||||||||||||||||||||||||| |||||||  | ||||| || ||||| ||||| | ||||||| ||||  ||||  ||||| |    
T  5789787 gagccaatattgatttttggcgtgattgttggtgtggaaatgttccgttgtgtgtgcgttttagacgcctatatgacttggctgtcaacaagccaatcac 5789886  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
     || | ||| || |||    | || ||||| || || |||||||| | |  ||||||||  || |||| ||| |||||||| || |||||||||||||||    
T  5789887 ggtgatgaacatattcgacttaggtgtggaggttggtggggaggcatggcagtggcgtcatcgtttgtaggcgtgggaggaagatttggtagaggagtgt 5789986  T
Q  301 agggctttgttactaacagtttctttgcaggaatc 335  Q
    ||||   | ||||| |||||| ||||| |||||||    
T  5789987 agggagcttttacttacagttactttgtaggaatc 5790021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 55725301 - 55725437
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    |||||||| |||||||||||||| || | |||  ||||||||||||| |||||||| ||||| ||||||| |  ||||||||||| ||| ||||||||||    
T  55725301 tgttcttcttggtggagggagatagtcatgatcagagatgggataggcgagggtggggagggttggtttgcggattgtgttaggatgagggtgggagatg 55725400  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtgg 137  Q
    | ||    || ||||||||||| ||||||||||||||    
T  55725401 gagccacaacagatttttggcgagattgttggtgtgg 55725437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 11586793 - 11587124
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    |||||||| |||||||||||||| || |||||| |||||||||||||||||||||| | ||| |||||   |  ||||||||||||||| |||   ||||    
T  11586793 tgttcttcttggtggagggagatagttaggattagagatgggataggtgagggtggggtgggctggttctcggattgtgttaggaggagggtgaaggatg 11586892  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    |  | || |||||||| |||||||| ||||||||||| ||||| ||  ||||||  || ||||| ||  | | |||| |   |||  | ||| ||||| |    
T  11586893 gatccgaaactgatttctggcgtgactgttggtgtggtgatgtcccattttgtgagcgctttagacggttatatgacatagttgtcaataaagcaatcgc 11586992  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
     |||| || ||||||  || ||||||||||||| ||  ||||||||| |  |||||| || || || ||||  || |||||| |  |  ||||||| |||    
T  11586993 ggttatgactatgttattgttgggggtggatgttggtagggaggcgtggcagtggcgccgtcgtttatgggtgtgagaggagaacctattagaggaatgt 11587092  T
Q  301 agggctttgttactaacagtttctttgcagga 332  Q
    |||||||| ||||| |||||||||||||||||    
T  11587093 agggctttattactgacagtttctttgcagga 11587124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 19735330 - 19735475
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    |||||||| |||||| ||||||| ||||||||| ||||||||||| | ||||| || |||||  |||||| |||  ||||||||||    |||||||| |    
T  19735330 tgttcttcttggtggcgggagatagtgaggattagagatgggataagagagggcggagagggtaggtttgtgtcgggtgttaggagacaggtgggagacg 19735429  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcc 146  Q
    | || || ||||| ||||||| |||||||||||||||| |||||||    
T  19735430 gtgctgagactgacttttggcatgattgttggtgtggaaatgttcc 19735475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 46146222 - 46146046
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||| || |||||| ||||||| |||||||||  |||||||||||| ||||| || || || |||||||  ||  ||||||||||    |||||||| |    
T  46146222 tgttcatcttggtggcgggagatagtgaggattatagatgggataggagagggcggagatggttggtttgcatcgggtgttaggagacaggtgggagacg 46146123  T
Q  101 gggcagatactgatttttggcgtga-ttgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttga 176  Q
    | || || ||||| ||||||||||| ||||||||||||| |||||||  ||||||| || ||||| || ||||||||    
T  46146122 gtgctgagactgacttttggcgtgatttgttggtgtggaaatgttccgttttgtgtgcgatttagacggctttttga 46146046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 4640526 - 4640576
Alignment:
Q  253 tggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 303  Q
    ||||||||  |||||||||||||||||||||| ||| ||||||||||||||    
T  4640526 tggcgtcgaaggttgtgggcttgggaggaggacttgttagaggagtgtagg 4640576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 308
Target Start/End: Complemental strand, 20395879 - 20395834
Alignment:
Q  263 ggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 308  Q
    |||||||||||||||||||||||  | |||||||||||||||||||    
T  20395879 ggttgtgggcttgggaggaggaggagttagaggagtgtagggcttt 20395834  T

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Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 265 - 308
Target Start/End: Original strand, 29553599 - 29553642
Alignment:
Q  265 ttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 308  Q
    |||||||| ||||||||||||||| |||||||||||||| ||||    
T  29553599 ttgtgggcgtgggaggaggagttgttagaggagtgtaggacttt 29553642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 305
Target Start/End: Complemental strand, 42778546 - 42778479
Alignment:
Q  238 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggc 305  Q
    |||||||||| || |||| |  || |||||||||||||||||||||||  | ||||||||||||||||    
T  42778546 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggc 42778479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 265 - 332
Target Start/End: Complemental strand, 46145956 - 46145889
Alignment:
Q  265 ttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcagga 332  Q
    ||||||| ||||||||| ||||||| ||||||||||||||   | ||||| |||||| ||||||||||    
T  46145956 ttgtgggtttgggaggaagagttggcagaggagtgtagggaactattacttacagttactttgcagga 46145889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 205 - 304
Target Start/End: Complemental strand, 48242718 - 48242619
Alignment:
Q  205 aggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtaggg 304  Q
    ||||| |||||| || |||| ||||| || ||||||||||||| |  |||||| |  || ||||||| ||||||||| || |||||||||| ||||||||    
T  48242718 aggaacatgttcttgttgggtgtggaggttggcggggaggcgtggcagtggcgacatcgtttgtgggtttgggaggaagaattggtagaggggtgtaggg 48242619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 265 - 308
Target Start/End: Original strand, 49926125 - 49926168
Alignment:
Q  265 ttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 308  Q
    |||||||| ||||||||||||||| ||| |||||||||||||||    
T  49926125 ttgtgggcgtgggaggaggagttgttagtggagtgtagggcttt 49926168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 305
Target Start/End: Original strand, 53486785 - 53486852
Alignment:
Q  238 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggc 305  Q
    |||||||||| || |||| |  || |||||||||||||||||||||||  | ||||||||||||||||    
T  53486785 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggc 53486852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 346 - 376
Target Start/End: Original strand, 13270831 - 13270861
Alignment:
Q  346 agatggctctggttacctaatcatgatgatg 376  Q
    |||||||||||||||||||||||||||||||    
T  13270831 agatggctctggttacctaatcatgatgatg 13270861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 303
Target Start/End: Complemental strand, 23657676 - 23657638
Alignment:
Q  265 ttgtgggcttgggaggaggagttggtagaggagtgtagg 303  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  23657676 ttgtgggcgtgggaggaggagttgttagaggagtgtagg 23657638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 303
Target Start/End: Complemental strand, 46543263 - 46543222
Alignment:
Q  262 cggttgtgggcttgggaggaggagttggtagaggagtgtagg 303  Q
    ||||||||||| |||||||||||| ||||||| |||||||||    
T  46543263 cggttgtgggcgtgggaggaggagatggtagaagagtgtagg 46543222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 2364822 - 2364447
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  2364822 tgttcttcgtggtggagggagattgtgaggattagagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatg 2364723  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2364722 gggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgtccggtttaggcgcctttttgacttgactgttcacaaatcaatctc 2364623  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2364622 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgt 2364523  T
Q  301 agggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2364522 agggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 2364447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 3 - 368
Target Start/End: Original strand, 10323168 - 10323533
Alignment:
Q  3 ttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatggg 102  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  10323168 ttcttcgtggtggagggagattgtgaggattagagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggg 10323267  T
Q  103 gcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctcag 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||| ||||||||||    
T  10323268 gcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttccgcgcctttttggcttgtctgttcacaattcaatctcag 10323367  T
Q  203 ttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtag 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10323368 ttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtag 10323467  T
Q  303 ggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatca 368  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||    
T  10323468 ggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctagttacctaatca 10323533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 19919824 - 19920199
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||| || ||||| |||||| || |||||||||||||||| ||||||||||    
T  19919824 tgttcttcgtggtggagggagattgtgaggattagagatgggataggtgagggaggtgagggttggtttcagacttgtgttaggaggagggtgggagatg 19919923  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    | |||||||||||||||||||||||||| |||||||||| || |||  | |||||||| |||  |||||||||||||||| ||||||||||||| |||||    
T  19919924 gtgcagatactgatttttggcgtgattgctggtgtggagctgatccattgtgtgtccgatttccgcgcctttttgacttgactgttcacaaatctatctc 19920023  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||| || ||||||||||||||||||||||||||||||||||||||    
T  19920024 agttaggaatatgtttctgctgggggtggatgtgggcggggaggcattgaggtgtcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgt 19920123  T
Q  301 agggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 376  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19920124 agggctttgttactaacagtttctttgcaggaatcagtgatagacagatggctctggttacctaatcatgatgatg 19920199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 34332410 - 34332782
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||| | | |||||||||||||| ||||||||||    
T  34332410 tgttcttcgtggtggagggagatagtgaggattagagatgggataggtgagggtggagagggatggtttgggacgtgtgttaggaggagggtgggagatg 34332509  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    | |||||  | ||||||||||||||| ||||||||||| ||||||| || ||||||||||||||||||||||||||||||  ||||  ||||||||||||    
T  34332510 gtgcagactcagatttttggcgtgatcgttggtgtggaaatgttccactgtgtgtccggtttaggcgcctttttgacttgaatgttatcaaatcaatctc 34332609  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
    |||||||||||||||| || ||||||||||  |||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34332610 agttaggaatatgttcttgttgggggtggacatgggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgt 34332709  T
Q  301 agggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatg 373  Q
    |||| ||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||    
T  34332710 agggttttattactaacagtttctttgcaggaatcagtgtcagacagatggctttggttacctaatcaggatg 34332782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 210 - 376
Target Start/End: Complemental strand, 7313112 - 7312946
Alignment:
Q  210 tatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttg 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7313112 tatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttg 7313013  T
Q  310 ttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 376  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7313012 ttactaacagtttctttgcaggaatcagtgatagacagatggctctggttacctaatcatgatgatg 7312946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 112 - 373
Target Start/End: Original strand, 40930245 - 40930495
Alignment:
Q  112 gatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctcagttaggaata 211  Q
    |||||||||| |||||||||||| | | |||||||  | |||| ||| ||||| ||||||| ||||||| ||||  ||||||||||||| ||||||||||    
T  40930245 gatttttggcatgattgttggtgcgtatatgttccattgtgtgaccgttttagtcgcctttatgacttggctgtgaacaaatcaatctctgttaggaata 40930344  T
Q  212 tgttcctgctggggg-tggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgt 310  Q
    ||||| || |||||| |||||||||| |||||||||||| |||||            |||||||||||||| |||||||||||||||||||||| ||| |    
T  40930345 tgttcttgttggggggtggatgtgggtggggaggcgttgcggtgg------------tgggcttgggaggaagagttggtagaggagtgtagggttttat 40930432  T
Q  311 tactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatg 373  Q
    ||||||||||||||||||| |||||||||  | | |||||||| |||||||| ||||| ||||    
T  40930433 tactaacagtttctttgcaagaatcagtgacaaatagatggctttggttaccaaatcaggatg 40930495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 48569634 - 48569968
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||||||||||| ||||||||| || |||||| |||||||||||||||||||||| ||||| ||||||| |  ||||||||||||||| ||||| ||||    
T  48569634 tgttcttcgtggtagagggagatagtcaggattagagatgggataggtgagggtggggagggttggtttgtggattgtgttaggaggagggtgggggatg 48569733  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    | || ||||| ||||||||||  ||||||||||||||   |||||   | ||||  || |||| ||| |||| ||||||  | ||  | ||| ||||| |    
T  48569734 gagctgataccgatttttggcaagattgttggtgtggtagtgttctgttgtgtgagcgctttatgcgtctttatgacttagccgtcaataaagcaatcac 48569833  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
     || ||||| |||||| || ||||||| || |  || ||||  |||| |  ||||||||| || || ||||  ||||||||||| |||||||||||||||    
T  48569834 ggtaaggaacatgttcttgttgggggttgaggatggtgggggagcgtggcagtggcgtcgccgtttatgggtgtgggaggaggacttggtagaggagtgt 48569933  T
Q  301 agggctttgttactaacagtttctttgcaggaatc 335  Q
    ||||||||  |||||||||| ||||||||||||||    
T  48569934 agggctttactactaacagtctctttgcaggaatc 48569968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 962758 - 963089
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||| || |||||||||||||| ||||||||| | ||||||||||  ||||| ||  |||| |||||||  ||  ||||||||||    |||||||| |    
T  962758 tgttcatcttggtggagggagatagtgaggattagggatgggatagaagagggaggatagggttggtttgcatcaggtgttaggagacaggtgggagacg 962857  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    | || || ||||| | |||||||||||||||||||||| |||||||  ||||||| || ||||| || |||||||| ||| | ||  |||||    || |    
T  962858 gtgctgagactgactgttggcgtgattgttggtgtggaaatgttccgttttgtgtgcgatttagacggctttttgatttgacagtcaacaaagttgtcac 962957  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
      ||||||| ||||||| | ||||  |||| || || |||| ||||| |  ||||||||| || ||||||| ||||||||| || |||||||||||||||    
T  962958 gattaggaacatgttccagttgggtttggaggttggtgggggggcgtggcagtggcgtcgccgcttgtgggtttgggaggaagaattggtagaggagtgt 963057  T
Q  301 agggctttgttactaacagtttctttgcagga 332  Q
    ||||  || ||||| |||||| ||||||||||    
T  963058 agggaattattacttacagttactttgcagga 963089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 246 - 360
Target Start/End: Complemental strand, 7032606 - 7032492
Alignment:
Q  246 gttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgttagac 345  Q
    |||| |||||||| |||| ||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||| | ||||||||||| ||| ||||     
T  7032606 gttgcggtggcgtaggcgtttgtgggcttgggaggaagagttggtagaggagtttagggctttattactaacagttacattgcaggaatcggtgatagat 7032507  T
Q  346 agatggctctggtta 360  Q
    |||||||| ||||||    
T  7032506 agatggctttggtta 7032492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 16179492 - 16179346
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    |||||||| |||||| ||||||| ||||||||| ||||||||||||| |||||||| ||| ||||||||| ||| |||||||| ||||| ||||| ||||    
T  16179492 tgttcttcttggtggcgggagattgtgaggattagagatgggataggcgagggtggggagagatggtttgtgtcgtgtgttagtaggagggtgggggatg 16179393  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcct 147  Q
    |  |  |||||||||||||||| ||| |||||| ||||  |||||||    
T  16179392 gatccaatactgatttttggcgcgatagttggtatggaattgttcct 16179346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 303
Target Start/End: Original strand, 17097488 - 17097773
Alignment:
Q  17 gggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatggggcagatactgattt 116  Q
    ||||||| ||||| ||| ||||||||||||| |||||||| ||||| ||||||| ||| |||||||||||  | ||||| || || || |||||||||||    
T  17097488 gggagatagtgagaattagagatgggataggcgagggtggggaggggtggtttgtgtcgtgtgttaggagacgggtgggggacggagctgatactgattt 17097587  T
Q  117 ttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctcagttaggaatatgttc 216  Q
    |||||||||||||||||||||  |||||||  | ||||  || ||||| || || | ||| ||| ||||  |||||  | || | || ||||| ||||||    
T  17097588 ttggcgtgattgttggtgtggtaatgttccgttgtgtgagcgttttagacggctatatgatttggctgtcaacaaagtagtcacggtaaggaacatgttc 17097687  T
Q  217 ctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 303  Q
     || ||||  |||| || ||| ||| ||||| |  |||||| || || ||||||||||| || || |||||||||||||||||||||    
T  17097688 ttgttgggtttggaggttggcaggg-ggcgtggtagtggcgccgtcgtttgtgggcttgagaagaagagttggtagaggagtgtagg 17097773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 12341853 - 12341986
Alignment:
Q  4 tcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatgggg 103  Q
    |||||||||||||||||||| || |||||| |||||||||||||||||||||| ||||| ||||||     |||||||| |||||| ||||| ||||| |    
T  12341853 tcttcgtggtggagggagattgttaggattagagatgggataggtgagggtggggagggctggtttacaggttgtgttaagaggagggtgggggatggag 12341952  T
Q  104 cagatactgatttttggcgtgattgttggtgtgg 137  Q
    | |||||  |||||||||| ||||||||||||||    
T  12341953 ctgataccaatttttggcgagattgttggtgtgg 12341986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 15313127 - 15312981
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggag-gagagtgggagat 99  Q
    |||||||| || ||| || |||| ||||||||| |||||| |||||| |||||||| ||||||||||||| ||| |||||||||||  || ||||| |||    
T  15313127 tgttcttcttgatggcggaagatagtgaggattagagatgagataggcgagggtggggagggatggtttgcgtcgtgtgttaggagaaagggtgggggat 15313028  T
Q  100 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcc 146  Q
    || || ||||||||||||||| ||||| ||||||||||  |||||||    
T  15313027 ggagccgatactgatttttggtgtgatagttggtgtggtaatgttcc 15312981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 3141396 - 3141066
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||| || |||||| ||||||| ||||||| | ||||||||||||| |||||  | ||||| |||||||  |   ||||||||||    |||||||| |    
T  3141396 tgttcatcttggtggcgggagatagtgaggactagagatgggataggagagggcagagagggttggtttgcattgggtgttaggagacaggtgggagacg 3141297  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    | || || ||||| |||||||||||||||||||||||| |||||||  ||||||| || ||||| || || ||||| ||| | ||  |||||    || |    
T  3141296 gtgctgagactgagttttggcgtgattgttggtgtggaaatgttccattttgtgtgcgatttagacggctctttgatttgacagtcaacaaagttgtcac 3141197  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
    ||||||||| ||||||| | ||||  |||| || || |||| |  || |  ||||||| | || ||||| | ||||||||| ||||||||||||||||||    
T  3141196 agttaggaacatgttccagttgggtttggaggttggtgggg-gatgtggcagtggcgttgccgcttgtgagtttgggaggaagagttggtagaggagtgt 3141098  T
Q  301 agggctttgttactaacagtttctttgcagga 332  Q
    ||||   | ||||| |||||| ||||||||||    
T  3141097 agggaactattacttacagttactttgcagga 3141066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 19891222 - 19891086
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||||||||||||||||||||| || |||||| ||||||||||| | |||||||  || || |||||||    ||||||||||||||| ||||| ||||    
T  19891222 tgttcttcgtggtggagggagatagtcaggattagagatgggataagcgagggtgaggaaggttggtttgcaggttgtgttaggaggagggtgggggatg 19891123  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtgg 137  Q
    | || || |  ||||||| | | ||||||||||||||    
T  19891122 gagccgaaatcgattttttgtgagattgttggtgtgg 19891086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 238 - 301
Target Start/End: Complemental strand, 31547679 - 31547616
Alignment:
Q  238 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgta 301  Q
    |||||||||| |  ||||||| ||||||||||||| ||||||||||||||| ||| ||||||||    
T  31547679 ggggaggcgtggcagtggcgtaggcggttgtgggcatgggaggaggagttgttaggggagtgta 31547616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 308
Target Start/End: Complemental strand, 26010327 - 26010285
Alignment:
Q  266 tgtgggcttgggaggaggagttggtagaggagtgtagggcttt 308  Q
    ||||||||||||||||||| |||||||||||||||||| ||||    
T  26010327 tgtgggcttgggaggaggaattggtagaggagtgtaggacttt 26010285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 308
Target Start/End: Complemental strand, 26846175 - 26846105
Alignment:
Q  238 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 308  Q
    |||||||||| ||||||| |  || |||||||||| ||||||||||||  | |||||||||||||||||||    
T  26846175 ggggaggcgtggaggtgggggaggaggttgtgggcatgggaggaggaggagttagaggagtgtagggcttt 26846105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 308
Target Start/End: Complemental strand, 47537576 - 47537506
Alignment:
Q  238 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 308  Q
    |||||||||| || |||| |  || |||||||||||||||||||||||  | |||||||||||||||||||    
T  47537576 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggcttt 47537506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 144
Target Start/End: Original strand, 20531648 - 20531788
Alignment:
Q  3 ttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatggg 102  Q
    |||||| |||||||||||||| ||||| ||| || ||||| |||| |    ||| ||||| | ||||| | | ||||| |||||||| ||||| || |||    
T  20531648 ttcttcttggtggagggagatagtgagaattagatatggg-tagggggaaatggtgaggggtagtttgcggcctgtgtcaggaggagggtgggggacggg 20531746  T
Q  103 gcagatactgatttttggcgtgattgttggtgtggagatgtt 144  Q
    || || ||| ||||||||||||| ||||||||||| ||||||    
T  20531747 gctgaaacttatttttggcgtgactgttggtgtggtgatgtt 20531788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 303
Target Start/End: Complemental strand, 44888212 - 44888147
Alignment:
Q  238 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 303  Q
    |||||||||| |  ||||||| ||||||||||||| ||||||||||| ||| ||| ||||||||||    
T  44888212 ggggaggcgtggcagtggcgtaggcggttgtgggcatgggaggaggaattgttaggggagtgtagg 44888147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 2756136 - 2756084
Alignment:
Q  252 gtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtaggg 304  Q
    ||||||||| || ||||||| ||||||||| ||||| ||||||||||||||||    
T  2756136 gtggcgtcgccgcttgtgggtttgggaggaagagtttgtagaggagtgtaggg 2756084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 9510037 - 9509997
Alignment:
Q  263 ggttgtgggcttgggaggaggagttggtagaggagtgtagg 303  Q
    |||||||||| ||||||||||||||||||| ||||||||||    
T  9510037 ggttgtgggcatgggaggaggagttggtagcggagtgtagg 9509997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 9518012 - 9517972
Alignment:
Q  263 ggttgtgggcttgggaggaggagttggtagaggagtgtagg 303  Q
    |||||||||| ||||||||||||||||||| ||||||||||    
T  9518012 ggttgtgggcatgggaggaggagttggtagcggagtgtagg 9517972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 19890950 - 19890890
Alignment:
Q  274 tgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaat 334  Q
    |||||||||||  ||||||| |||||| ||| ||| ||||||||||| |||||||||||||    
T  19890950 tgggaggaggacctggtagaagagtgtggggatttattactaacagtctctttgcaggaat 19890890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 308
Target Start/End: Complemental strand, 15279873 - 15279803
Alignment:
Q  238 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 308  Q
    |||||||||| || ||||||| |  | |||||||||||||| |||||| ||||||||| ||||||| ||||    
T  15279873 ggggaggcgtggatgtggcgtagaagattgtgggcttgggaagaggagatggtagaggcgtgtaggtcttt 15279803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 303
Target Start/End: Complemental strand, 31675211 - 31675173
Alignment:
Q  265 ttgtgggcttgggaggaggagttggtagaggagtgtagg 303  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  31675211 ttgtgggtgtgggaggaggagttggtagaggagtgtagg 31675173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 303
Target Start/End: Original strand, 31921209 - 31921247
Alignment:
Q  265 ttgtgggcttgggaggaggagttggtagaggagtgtagg 303  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  31921209 ttgtgggtgtgggaggaggagttggtagaggagtgtagg 31921247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 301
Target Start/End: Original strand, 27924925 - 27924961
Alignment:
Q  265 ttgtgggcttgggaggaggagttggtagaggagtgta 301  Q
    ||||||||||||||||||||| || ||||||||||||    
T  27924925 ttgtgggcttgggaggaggaggtgttagaggagtgta 27924961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 42514265 - 42513890
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  42514265 tgttcttcgtggtggagggagattgtgaggattagagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatg 42514166  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  42514165 gggcagatactgatttctggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgactgttcacaaatcaatctc 42514066  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42514065 agttaggaatatgttccttctgggggtggatgtggggggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgt 42513966  T
Q  301 agggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 376  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42513965 agggctttgttactaacagtttctttgcaggactcagtgttagacagatggctctggttacctaatcatgatgatg 42513890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 12825744 - 12825369
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||| | | |||||||||||||| ||||||||||    
T  12825744 tgttcttcgtggtggagggagattgtgaggattagagatgggataggtgagggtggagagggttggtttgggacatgtgttaggaggagggtgggagatg 12825645  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    | |||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12825644 gtgcagatactgatttttggcgtgattgttggagtggagatgttcctttgtgtgtccggtttaggcgcctttttgacttgactgttcacaaatcaatctc 12825545  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  12825544 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggatgaggagttggtagaggagtgt 12825445  T
Q  301 agggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 376  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12825444 agggctttgttactaacagtttctttgcaggaatcagtgatagacagatggctctggttacctaatcatgatgatg 12825369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 30731909 - 30732284
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    |||||||| |||||||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||| | | |||||||||||||| ||||||||||    
T  30731909 tgttcttcatggtggagggagattgtgaggattagagatgggataggtgagggtggagagggttggtttgggacatgtgttaggaggagggtgggagatg 30732008  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||| |||||||||||||||    
T  30732009 gtgcagatactgatttttggcgtgattgttggtgtggagatgttcctctgtgtgtccggtttagacgcctttttgacttgactgctcacaaatcaatctc 30732108  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30732109 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgt 30732208  T
Q  301 agggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 376  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30732209 agggctttgttactaacagtttctttgcaggaatcagtgatagacagatggctctggttacctaatcatgatgatg 30732284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 27116768 - 27117131
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||| |||||||||||||||||| ||||||||||    
T  27116768 tgttcttcgtggtggagggagatcgtgaggattagagatgggataggtgagggtggagggggatggtttgggtcttgtgttaggaggagggtgggagatg 27116867  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    | | ||||||||||||||||||||            ||||||||||| | ||||||||||||||||||||||||||||||||||||||  ||||| ||||    
T  27116868 gtgtagatactgatttttggcgtg------------gagatgttcctttgtgtgtccggtttaggcgcctttttgacttgtctgttcatcaatcagtctc 27116955  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||    
T  27116956 agttaggaatatgttcctgctgggggtggatgtgggcggagaggcgttgaggtggcgtaggcggttgtgggcctgggaggaggggttggtagaggagtgt 27117055  T
Q  301 agggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 376  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||    
T  27117056 agggctttgttactaacagtttctttgcaggaatcagtgatagacagatggctatggttacctaataatgatgatg 27117131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 23238928 - 23238554
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| ||||||||||    
T  23238928 tgttcgtcgtggtggagggagatagtgaggattagagatgggataggtgagggtggagaggggtggtttgggtcttgtgttaggaggagggtgggagatg 23238829  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    |  | ||||| ||||||||||||||| ||||||| ||||||||||| || |||| ||||||| |||| ||||||||||||  ||| ||||||||||||||    
T  23238828 gtacggataccgatttttggcgtgatcgttggtgcggagatgttccactgtgtgcccggtttgggcgtctttttgacttgagtgtacacaaatcaatctc 23238729  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
     ||||||||||||||| || |  |||||||| |||| |||||||||||| |||||||| || ||||||||||  ||||||||||||||||||||||||||    
T  23238728 cgttaggaatatgttcttg-ttagggtggatttgggtggggaggcgttgcggtggcgtaggaggttgtgggccagggaggaggagttggtagaggagtgt 23238630  T
Q  301 agggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 376  Q
    |||||||| || |||||||||||||||||||||||||||  |||||||||||| ||| ||||||||||||||||||    
T  23238629 agggctttattgctaacagtttctttgcaggaatcagtgacagacagatggctttgggtacctaatcatgatgatg 23238554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 31642056 - 31641681
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    |||||||| |||||| ||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| |||||||| |    
T  31642056 tgttcttcatggtggcgggagatagtgaggattagagatgggataggtgagggtggagagggttggtttgggtcttgtgttaggaggagggtgggagacg 31641957  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    | |||||||| ||||||||||| ||||||||||||||| |||||||| | |||| ||||||||| ||||||| ||||||| ||||  ||||| |||||||    
T  31641956 gtgcagatacagatttttggcgggattgttggtgtggaaatgttcctttgtgtgaccggtttagtcgcctttatgacttgactgtgaacaaaccaatctc 31641857  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
     |||||||| |||||| || |||||||||| || || ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |    
T  31641856 tgttaggaacatgttcttgatgggggtggaggtcggtggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaagagttggtagaggagttt 31641757  T
Q  301 agggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 376  Q
    |||||||| |||||||||||||| |||||||||||||||  ||| |||||| | |||||||| | ||| |||||||    
T  31641756 agggctttattactaacagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaggatgatg 31641681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 35983386 - 35983758
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||| ||||| |||||||  ||||||||||||||||| |||||||| |    
T  35983386 tgttcttcgtggtggagggagattgtgaggattagagatgggataggtgacggtggagagggttggtttggatcttgtgttaggaggagggtgggagacg 35983485  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    | ||||| || |||||||||||||||||| ||||||||||||||||| | |||| ||| ||||| ||||| | ||||||| ||||  ||||| |||||||    
T  35983486 gtgcagaaacggatttttggcgtgattgtaggtgtggagatgttcctatgtgtgaccgttttagtcgcctatatgacttgactgtgaacaaaccaatctc 35983585  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
     ||||||||||||||| || |||||||||||| ||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |    
T  35983586 tgttaggaatatgttcttgttgggggtggatgagggtggggaggcgttgaggtggcgtaggcggttgtgggcttaggaggaggagttggtagaggagttt 35983685  T
Q  301 agggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatg 373  Q
    |||||||| |||||||||||||| || ||||||||||||  ||| |||| ||| |||||||| ||||| ||||    
T  35983686 agggctttattactaacagtttcattacaggaatcagtgacagatagatagctttggttaccaaatcaggatg 35983758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 28535270 - 28535631
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    |||||||| |||||||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| |||||||| |    
T  28535270 tgttcttcatggtggagggagatagtgaggattagagatgggataggtgagggtggagagggttggtttgggtcttgtgttaggaggagggtgggagacg 28535369  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    | | ||| || ||||||||||| |||||||||||||||||||||||| | |||| ||| ||||| ||||||| ||||||| ||||  ||||  |||||||    
T  28535370 gtgtagaaacagatttttggcgggattgttggtgtggagatgttcctttgtgtgaccgttttagtcgcctttatgacttgactgtgaacaatccaatctc 28535469  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
     ||||||||||||||| || ||||||||||||| || ||||||||||||||||||||| || ||||||||||||| ||||| |||||||||||||||| |    
T  28535470 tgttaggaatatgttcttgttgggggtggatgtcggtggggaggcgttgaggtggcgtaggtggttgtgggcttgagaggaagagttggtagaggagttt 28535569  T
Q  301 agggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacc 362  Q
    |||||||| |||||||||||||| |||||||||||| ||  ||| |||||||| ||||||||    
T  28535570 agggctttattactaacagtttcattgcaggaatcaatgacagatagatggctttggttacc 28535631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 42928676 - 42928304
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    |||||||||||||||||| |||| |||||| || |||||||||||||||||||||| ||||| ||||||| | | ||| |||||||||| ||||| || |    
T  42928676 tgttcttcgtggtggaggcagatagtgagggttagagatgggataggtgagggtggagagggctggtttggggcgtgttttaggaggagggtgggtgacg 42928577  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    | || || || ||||||| ||||||||||||||| || ||||||||    |||| ||| ||||| ||||| | ||||||| ||||| | ||||||||| |    
T  42928576 gtgctgaaacagatttttagcgtgattgttggtgcggtgatgttccgaggtgtgaccgttttagtcgcctatatgacttggctgttaataaatcaatcac 42928477  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
    |||||||||||||||| || ||| || ||||||||| ||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42928476 agttaggaatatgttcttgttggaggcggatgtgggtggggaggcgttgcagtggcgtcggcggttgtgggcttgggaggaagagttggtagaggagtgt 42928377  T
Q  301 agggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatg 373  Q
    |||| ||| ||||| || |||| ||| ||||||||||||  ||| |||||| | |||||||| ||||| ||||    
T  42928376 agggttttattacttaccgtttttttacaggaatcagtgacagatagatggttgtggttaccaaatcaggatg 42928304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 27796029 - 27795694
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggatag-gtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagat 99  Q
    |||||||||||||||||||||   || | |||| |||||||||||| | |||||||| ||||| ||||||| |  ||||||||||||||| ||||| |||    
T  27796029 tgttcttcgtggtggagggagtaagtcaagattagagatgggatagcgcgagggtggagagggttggtttgtggattgtgttaggaggagggtgggggat 27795930  T
Q  100 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatct 199  Q
    || || ||||||||||||||||| ||||||||||||||   ||||||  | ||||  || |||||||| |||| ||||||  || | || |||||||||     
T  27795929 ggagctgatactgatttttggcgagattgttggtgtggtagtgttccgttgtgtgagcgctttaggcgtctttatgacttagctatccataaatcaatca 27795830  T
Q  200 cagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtg 299  Q
    | |  ||||| |||||| || | |||||||| |  || ||||  |||| |  ||||||||| || || ||||  ||||||||||| ||||||||||||||    
T  27795829 cggcgaggaacatgttcttgttaggggtggaggatggtgggggagcgtggcagtggcgtcgccgattatgggtgtgggaggaggacttggtagaggagtg 27795730  T
Q  300 tagggctttgttactaacagtttctttgcaggaatc 335  Q
    ||||||||| |||||||||||||||||| |||||||    
T  27795729 tagggctttattactaacagtttctttggaggaatc 27795694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 25857019 - 25857155
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||     ||||||||||||||| ||||| ||||    
T  25857019 tgttctttgtggtggagggagattgtgaggattagagatgggataggtgagggtggggagggatggttttcaggttgtgttaggaggagggtgggggatg 25857118  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtgg 137  Q
    | || ||||| ||||||||||| ||||||||||||||    
T  25857119 gagctgataccgatttttggcgcgattgttggtgtgg 25857155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 10777326 - 10777193
Alignment:
Q  4 tcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatgggg 103  Q
    |||||||||||||||||||| || |||||| ||||||||||| |||||||||| ||||| |||||||    ||||||||||||||| ||||| ||||| |    
T  10777326 tcttcgtggtggagggagatagttaggattagagatgggatatgtgagggtggggagggctggtttgcaggttgtgttaggaggagggtgggggatggag 10777227  T
Q  104 cagatactgatttttggcgtgattgttggtgtgg 137  Q
    | ||||||||||||||||| ||||||||||||||    
T  10777226 ccgatactgatttttggcgagattgttggtgtgg 10777193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 8299777 - 8299913
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||||| ||||||||||||||| |||||||||  ||||||||||||||||||||| ||||||||||||     ||||||||||||||| ||||| ||||    
T  8299777 tgttctttgtggtggagggagattgtgaggattaaagatgggataggtgagggtggggagggatggttttcaggttgtgttaggaggagggtgggggatg 8299876  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtgg 137  Q
    | || ||||| ||||||||||| ||||||||||||||    
T  8299877 gagctgataccgatttttggcgcgattgttggtgtgg 8299913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 33170203 - 33169872
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||| || |||||| ||||||| ||||||||| | ||||||||||  |||||  | ||||| |||||||  ||  ||||||||||    |||||||| |    
T  33170203 tgttcatcttggtggcgggagatagtgaggattagggatgggatagaagagggatgagagggttggtttgcatcaggtgttaggagacaggtgggagacg 33170104  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    | || || ||||| |||||||||||||||||||||||| |||||||  ||||||| || ||||| || |||||||| ||| | ||  |||||    || |    
T  33170103 gtgctgagactgacttttggcgtgattgttggtgtggaaatgttccgttttgtgtgcgatttagacggctttttgatttgacagtcaacaaagttgtcac 33170004  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
     |||||||| ||||||| | ||||  |||| || || |||| ||||| |  |||||| || || ||||||| ||||||||| ||||||||||||||||||    
T  33170003 ggttaggaacatgttccagttgggtttggaggttggtgggggggcgtggcagtggcgacgccgcttgtgggtttgggaggacgagttggtagaggagtgt 33169904  T
Q  301 agggctttgttactaacagtttctttgcagga 332  Q
    ||||  || ||||| |||||| ||||||||||    
T  33169903 agggaattattacttacagttactttgcagga 33169872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 252 - 332
Target Start/End: Complemental strand, 24408222 - 24408142
Alignment:
Q  252 gtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcagga 332  Q
    ||||||||| || ||||||||||||||||| ||||||||||||||||||||||   | ||||| |||||| ||||||||||    
T  24408222 gtggcgtcgtcgcttgtgggcttgggaggaagagttggtagaggagtgtagggaactattacttacagttactttgcagga 24408142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 27165545 - 27165606
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgaggg 62  Q
    |||||||| ||||||||||||||  |||||||| ||||||||||||| |||||||| |||||    
T  27165545 tgttcttcttggtggagggagataatgaggattagagatgggataggcgagggtggggaggg 27165606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 332
Target Start/End: Original strand, 18089393 - 18089687
Alignment:
Q  35 gagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtg 134  Q
    |||||||| |||| |||||||| ||||| ||||||| ||| ||||||||| |    ||||| ||||| ||  |||||||||||||||||||||||| |||    
T  18089393 gagatgggttaggcgagggtgg-gaggggtggtttgtgtcgtgtgttaggcgtcaggtgggtgatggagcttatactgatttttggcgtgattgttagtg 18089491  T
Q  135 tggagatgttcctctttg-tgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 233  Q
    |||  |||||  || ||| ||  || |||||||| |||| ||| ||||||||  | |||    || | |||||||||||||||||| ||||  || | ||    
T  18089492 tggtaatgtt--tcgttgttgatcgttttaggcggctttatgatttgtctgtcaataaagtggtcacggttaggaatatgttcctgatgggtttgaaggt 18089589  T
Q  234 gggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcagga 332  Q
     || |||| ||| | |  ||| |  || ||||||||||||||||||||  ||||| ||||||||||||||| | | ||||| |||||| | ||||||||    
T  18089590 tggagggg-ggcttggcagtgccaccgacggttgtgggcttgggaggaaaagttgatagaggagtgtagggatcttttacttacagttacattgcagga 18089687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 308
Target Start/End: Original strand, 20208551 - 20208621
Alignment:
Q  238 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 308  Q
    |||||||||| ||||||| |  || |||||||||| ||||||||||||  | |||||||||||||||||||    
T  20208551 ggggaggcgtggaggtggaggaggaggttgtgggcatgggaggaggaggagttagaggagtgtagggcttt 20208621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 332
Target Start/End: Original strand, 27165712 - 27165856
Alignment:
Q  188 acaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagtt 287  Q
    ||||| ||||| | || ||||| |||||| |||||| | |||| || || ||||||| || |  ||| |||||  | |||||||||||| |||| |||||    
T  27165712 acaaagcaatcacggtaaggaacatgttcttgctggtgatggaggttggtggggaggggtggtagtgacgtcgttgtttgtgggcttggaaggaagagtt 27165811  T
Q  288 ggtagaggagtgtagggctttgttactaacagtttctttgcagga 332  Q
    ||||||| |||||||||  || ||||| | ||||| |||||||||    
T  27165812 ggtagagtagtgtagggaattattactcatagtttatttgcagga 27165856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 303
Target Start/End: Complemental strand, 476494 - 476456
Alignment:
Q  265 ttgtgggcttgggaggaggagttggtagaggagtgtagg 303  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  476494 ttgtgggtgtgggaggaggagttggtagaggagtgtagg 476456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 302
Target Start/End: Complemental strand, 380182 - 380145
Alignment:
Q  265 ttgtgggcttgggaggaggagttggtagaggagtgtag 302  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  380182 ttgtgggcgtgggaggaggagttggtcgaggagtgtag 380145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 337
Target Start/End: Original strand, 8300028 - 8300113
Alignment:
Q  252 gtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcag 337  Q
    ||||||||| || || ||||  ||||||||||| ||| |||  |||||||||| ||| ||||| |||||  |||||||||||||||    
T  8300028 gtggcgtcgtcgtttatgggtatgggaggaggaattgttagtagagtgtagggatttattactgacagtcactttgcaggaatcag 8300113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 306
Target Start/End: Original strand, 11574553 - 11574594
Alignment:
Q  265 ttgtgggcttgggaggaggagttggtagaggagtgtagggct 306  Q
    |||||||| |||||||||||| || |||||||||||||||||    
T  11574553 ttgtgggcgtgggaggaggagatgttagaggagtgtagggct 11574594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 306
Target Start/End: Original strand, 22095109 - 22095150
Alignment:
Q  265 ttgtgggcttgggaggaggagttggtagaggagtgtagggct 306  Q
    |||||||| ||||||||||||||| ||||||||| |||||||    
T  22095109 ttgtgggcgtgggaggaggagttgttagaggagtttagggct 22095150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 337
Target Start/End: Original strand, 25857270 - 25857355
Alignment:
Q  252 gtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcag 337  Q
    ||||||||| || || ||||  ||||||||||| ||| |||  |||||||||| ||| ||||| |||||  |||||||||||||||    
T  25857270 gtggcgtcgtcgtttatgggtatgggaggaggaattgttagtagagtgtagggatttattactgacagtcactttgcaggaatcag 25857355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 3797 - 3422
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||| ||| || ||||||||||| ||||||||||    
T  3797 tgttcgtcgtggtggagggagatagtgaggattagagatgggataggtgagggtggagaggggtggtttgggtcctgcgttaggaggagggtgggagatg 3698  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    | || ||||| ||||||||||||||||||||||| ||||| ||||| || |||| ||||||| |||| ||||||||||||  ||| |||||||| |||||    
T  3697 gtgcggataccgatttttggcgtgattgttggtgcggagacgttccactgtgtgcccggtttgggcgtctttttgacttgagtgtacacaaatctatctc 3598  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
     ||||||||||||||| || |||||||||||||||| |||||||||||| |||||||| || |||||||||| |||||||||||||||||||||||||||    
T  3597 cgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcgtaggaggttgtgggcctgggaggaggagttggtagaggagtgt 3498  T
Q  301 agggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatg 376  Q
    |||||||| ||||||||||||||||| ||||||||||||  |||||||||||| ||| ||||||| ||||||||||    
T  3497 agggctttattactaacagtttctttacaggaatcagtgacagacagatggctttgggtacctaaccatgatgatg 3422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 155; Significance: 3e-82; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 24767024 - 24767346
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||||||||||||||||||||| ||||||||| | ||||||||| |||||||||| ||||| ||||||| | | |||||||||||||| ||||| || |    
T  24767024 tgttcttcgtggtggagggagatagtgaggattagggatgggatatgtgagggtggagagggctggtttggggcgtgtgttaggaggagggtgggtgacg 24767123  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    | ||  | |  ||||||||||||||| ||||||| || |||||||| || |||| ||| ||||| ||||| | ||||||| ||||| ||||||||||| |    
T  24767124 gtgctaaaatagatttttggcgtgatcgttggtgcggtgatgttccactgtgtgaccgttttagtcgcctatatgacttggctgttaacaaatcaatcac 24767223  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
    |||||||||||||||| || |||| ||||| ||||| |||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  24767224 agttaggaatatgttcttgttgggcgtggacgtgggtggggaggcgttgcggtggcgtcgacggttgtgggcttgggaggaagagttggtagaggagtgt 24767323  T
Q  301 agggctttgttactaacagtttc 323  Q
    |||| | | ||||||||||||||    
T  24767324 agggttgtattactaacagtttc 24767346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 140 - 373
Target Start/End: Complemental strand, 2554043 - 2553810
Alignment:
Q  140 atgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcgg 239  Q
    ||||||| || |||| ||| |||||||||||||||||||||  ||||||||||||||||| |||||||||||||||| || |||||||||| ||||| ||    
T  2554043 atgttccactatgtgcccgatttaggcgcctttttgacttgaatgttcacaaatcaatcttagttaggaatatgttcttgttgggggtggacgtgggtgg 2553944  T
Q  240 ggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcagtg 339  Q
    ||| |||||| |||||||| |||||||||||||||||||| || |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  2553943 ggaagcgttgcggtggcgtaggcggttgtgggcttgggagtagaagttggtaaaggagtgtagggctttattactaacagtttctttgcaggaatcagtg 2553844  T
Q  340 ttagacagatggctctggttacctaatcatgatg 373  Q
      |||||||||||| || ||||||||||||||||    
T  2553843 acagacagatggctttgattacctaatcatgatg 2553810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 170 - 373
Target Start/End: Complemental strand, 21168574 - 21168372
Alignment:
Q  170 tttttgacttgtctgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtg 269  Q
    |||||||||||  |||||||||||||||||| ||||||||||||||| || | ||| | || ||||| |||||||||||| |||||||| ||||||||||    
T  21168574 tttttgacttgaatgttcacaaatcaatctctgttaggaatatgttcttgttaggg-tagacgtgggaggggaggcgttgcggtggcgtaggcggttgtg 21168476  T
Q  270 ggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcat 369  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||    
T  21168475 ggcttgggaggaggagttggtagaggagtgtagggctttattactaacagtttctttgcaggaatcagtgacagacagatggctttggttacctaatcat 21168376  T
Q  370 gatg 373  Q
    ||||    
T  21168375 gatg 21168372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 14372586 - 14372920
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    |||||||| |||||||||||||| || |||||| |||| ||||||| ||||||||| ||||| ||||||  |  |||||| |||||||| ||||| ||||    
T  14372586 tgttcttcttggtggagggagatagtcaggattagagacgggatagatgagggtggggagggttggttttcgggttgtgtcaggaggagggtgggggatg 14372685  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    |  | ||||||||||||||||| ||||||||||||||  |||||||  || |||  |  ||||| ||  | | ||| ||| | ||  |||||  |||| |    
T  14372686 gttccgatactgatttttggcgggattgttggtgtggtaatgttccgtttcgtgagcactttagacggttatatgatttggccgtcaacaaagtaatcac 14372785  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
     ||||| ||||||||  |  |||||||||| || || || ||||||| || ||||||||  ||||| ||||| ||||| |||||  | ||||||||||||    
T  14372786 ggttagaaatatgtttttattgggggtggaggttggtggtgaggcgtggaagtggcgtcatcggttatgggcgtgggacgaggacctagtagaggagtgt 14372885  T
Q  301 agggctttgttactaacagtttctttgcaggaatc 335  Q
    |||||||| ||||| ||||||||||||||||||||    
T  14372886 agggctttattactgacagtttctttgcaggaatc 14372920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 75 - 336
Target Start/End: Original strand, 15958482 - 15958743
Alignment:
Q  75 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgccttttt 174  Q
    ||||||||||||||| ||||| |||||  | || |||||||||||||||||||||||||||||  |||||||  ||||||  |  ||||| || || | |    
T  15958482 ttgtgttaggaggagggtgggggatggatccgaaactgatttttggcgtgattgttggtgtggtaatgttccgttttgtgagctctttagtcggctatat 15958581  T
Q  175 gacttgtctgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggctt 274  Q
    || ||| ||||  |||||  |||| |||||||| |||||||| |||||| ||||||||| || |||||||||| |  || |||||| || || ||||| |    
T  15958582 gatttggctgtcaacaaagtaatcacagttaggcatatgttcttgctggaggtggatgttggtggggaggcgtggcagttgcgtcgtcgtttatgggcgt 15958681  T
Q  275 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatca 336  Q
    || ||||  | ||| ||||||| ||||||| ||| ||||| |||||||||||||||||||||    
T  15958682 ggtaggaaaacttgttagaggaatgtagggttttattactgacagtttctttgcaggaatca 15958743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 2554151 - 2554045
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    |||||||||||||||||||||||  ||||| || |||||||||||||||||||||| ||||||||||||| | |||||||||||||||| ||||||||||    
T  2554151 tgttcttcgtggtggagggagataatgagggttagagatgggataggtgagggtggagagggatggtttgggacttgtgttaggaggagggtgggagatg 2554052  T
Q  101 gggcaga 107  Q
    | |||||    
T  2554051 gtgcaga 2554045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 17605929 - 17606065
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    |||||||| | |||||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||     ||||||||||||||| ||||| ||||    
T  17605929 tgttcttctttgtggagggagattgtgaggattagagatgggataggtgagggtggggagggctggtttacaggttgtgttaggaggagggtgggggatg 17606028  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtgg 137  Q
    | || ||||| ||||||||||| ||||||||||||||    
T  17606029 gagctgataccgatttttggcgagattgttggtgtgg 17606065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 20882628 - 20882764
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||||||||||||||||||||| || |||||| ||||||||||||| |||||||| ||||| |||||||  | ||||||||||||||| ||||| ||||    
T  20882628 tgttcttcgtggtggagggagatagtcaggattagagatgggataggcgagggtggggagggttggtttgcatgttgtgttaggaggagggtgggggatg 20882727  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtgg 137  Q
    | || || ||  |||||||||| ||||||||||||||    
T  20882728 gagccgaaaccaatttttggcgagattgttggtgtgg 20882764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 4 - 333
Target Start/End: Original strand, 10576848 - 10577176
Alignment:
Q  4 tcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatgggg 103  Q
    |||||||||||||||||||| || |||||| |||||||||||||||||||||| ||||| ||||||     ||||||||||||||| ||||| ||||| |    
T  10576848 tcttcgtggtggagggagatagttaggattagagatgggataggtgagggtggggagggctggtttataggttgtgttaggaggagggtgggggatggag 10576947  T
Q  104 cagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctcagt 203  Q
    | ||||| ||||||||| | ||||||||||||||   ||||||  | ||||| || |||||||| |||| ||| ||  ||||  | |||   ||  ||||    
T  10576948 ctgataccgatttttggtgagattgttggtgtggtagtgttccgttgtgtgttcgttttaggcggctttatgatttaactgtcaataaagttattacagt 10577047  T
Q  204 taggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 303  Q
      |||| |||||  ||||||||||||| |  |  |||| ||||| |  ||||||||| || || ||||  ||||||||||| ||| |||  |||||||||    
T  10577048 gcggaacatgtttttgctgggggtggagggtgatgggg-ggcgtggcagtggcgtcgtcgtttatgggtatgggaggaggaattgctagtagagtgtagg 10577146  T
Q  304 gctttgttactaacagtttctttgcaggaa 333  Q
    | ||| ||||| ||||| ||||||||||||    
T  10577147 gatttattactgacagtctctttgcaggaa 10577176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 33185980 - 33185678
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    |||||||| ||||||| |||||| ||||| ||  |||||||| | || |  ||||| ||||| |||||||  |||| |||  ||||||| ||||| ||||    
T  33185980 tgttcttcttggtggatggagatagtgagaataagagatggggttggcggaggtggtgaggggtggtttgtatcttatgtctggaggagggtgggggatg 33185881  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    |||| || ||||||||||||||||||||||||||||| ||||||||| |  |||  || | | | || |||| ||||||| ||||  |||||  |||| |    
T  33185880 gggctgaaactgatttttggcgtgattgttggtgtggtgatgttcctttccgtgagcgctctcgtcgtctttatgacttgactgtcaacaaagtaatcac 33185781  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
     |||||||| ||| ||||| ||||   ||| |  || |||||||||| |  ||| ||||| || |||||| | |||||||| ||||||||||||||||||    
T  33185780 ggttaggaacatgctcctgttgggttgggaggatggtggggaggcgtggcagtgacgtcgccgtttgtggacatgggaggaagagttggtagaggagtgt 33185681  T
Q  301 agg 303  Q
    |||    
T  33185680 agg 33185678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 21629705 - 21629838
Alignment:
Q  4 tcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatgggg 103  Q
    |||||||||||||||||||| || |||||| ||||||||||| |||||||||| ||||| ||||||     ||||||||||||||| ||||| ||||| |    
T  21629705 tcttcgtggtggagggagattgttaggattagagatgggataagtgagggtggggagggctggttttcaggttgtgttaggaggagggtgggggatggag 21629804  T
Q  104 cagatactgatttttggcgtgattgttggtgtgg 137  Q
    | ||||  ||||||||||| ||||||||||||||    
T  21629805 ctgatatcgatttttggcgagattgttggtgtgg 21629838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 17573268 - 17573387
Alignment:
Q  18 ggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatggggcagatactgatttt 117  Q
    |||||| ||||||||| |||||||||||||||||||||| ||||| ||||||     ||||||||||||||| ||||| ||||| || ||||| ||||||    
T  17573268 ggagattgtgaggattagagatgggataggtgagggtggggagggctggttttcaggttgtgttaggaggagggtgggggatggagctgataccgatttt 17573367  T
Q  118 tggcgtgattgttggtgtgg 137  Q
    ||||| ||||||||||||||    
T  17573368 tggcgcgattgttggtgtgg 17573387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 13938264 - 13938101
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagag-tgggagat 99  Q
    ||||| || ||||||  |||||| ||||||||| ||||||||||||| ||||| || ||||| |||||||  ||  |||||||||| |||| ||||||||    
T  13938264 tgttcatcttggtggcaggagatagtgaggattagagatgggataggagagggaggagagggttggtttgcatcaggtgttaggag-agaggtgggagat 13938166  T
Q  100 ggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttag 164  Q
    || || || ||||| ||||| |||||||||||||||||| |||||||  ||||||| || |||||    
T  13938165 ggtgctgagactgacttttgtcgtgattgttggtgtggaaatgttccgttttgtgtgcgatttag 13938101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 252 - 332
Target Start/End: Complemental strand, 13937994 - 13937914
Alignment:
Q  252 gtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcagga 332  Q
    ||||||||| || ||||||| ||||||||| ||||||||||||||||||||||  || ||||| |||||| ||||||||||    
T  13937994 gtggcgtcgccgcttgtgggtttgggaggaagagttggtagaggagtgtagggaattattacttacagttactttgcagga 13937914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 253 - 337
Target Start/End: Original strand, 20882880 - 20882964
Alignment:
Q  253 tggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcag 337  Q
    |||||||| || || ||||| |||||||||||  ||||||| | |||||||| ||| ||||||||||| ||||||||||||||||    
T  20882880 tggcgtcgtcgtttatgggcgtgggaggaggacctggtagaagggtgtagggatttattactaacagtctctttgcaggaatcag 20882964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 26514007 - 26513967
Alignment:
Q  263 ggttgtgggcttgggaggaggagttggtagaggagtgtagg 303  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26514007 ggttgtgggcttgggaggaggagttggtagaggagtgtagg 26513967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 308
Target Start/End: Original strand, 649898 - 649968
Alignment:
Q  238 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 308  Q
    |||||||||| || |||| |  || |||||||||||||||||||||||  | |||||||||||||||||||    
T  649898 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggcttt 649968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 308
Target Start/End: Original strand, 18051306 - 18051351
Alignment:
Q  263 ggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 308  Q
    |||||||||||||||||||||||  | |||||||||||||||||||    
T  18051306 ggttgtgggcttgggaggaggaggagttagaggagtgtagggcttt 18051351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 305
Target Start/End: Original strand, 9199084 - 9199151
Alignment:
Q  238 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggc 305  Q
    |||||||||| || |||| |  || |||||||||||||||||||||||  | ||||||||||||||||    
T  9199084 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggagaagttagaggagtgtagggc 9199151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 336
Target Start/End: Complemental strand, 11462664 - 11462617
Alignment:
Q  289 gtagaggagtgtagggctttgttactaacagtttctttgcaggaatca 336  Q
    ||||| |||||||||| ||| ||||||||||| |||||||||||||||    
T  11462664 gtagaagagtgtagggatttattactaacagtctctttgcaggaatca 11462617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 5041815 - 5041737
Alignment:
Q  249 gaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttg 327  Q
    ||||||||||||  | |||||||  |||||||| |||||| |||||||||||||||| ||  |||| ||| ||||||||    
T  5041815 gaggtggcgtcgtggtttgtgggtgtgggaggaagagttgttagaggagtgtagggcattactactgacaatttctttg 5041737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 327
Target Start/End: Original strand, 18682401 - 18682455
Alignment:
Q  273 ttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttg 327  Q
    ||||||||| ||||||| |||||||||||||||| | ||||| |||||| |||||    
T  18682401 ttgggaggaagagttggcagaggagtgtagggctctattactcacagttactttg 18682455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 308
Target Start/End: Complemental strand, 25318126 - 25318092
Alignment:
Q  274 tgggaggaggagttggtagaggagtgtagggcttt 308  Q
    ||||||||||||||| |||||||||||||||||||    
T  25318126 tgggaggaggagttgctagaggagtgtagggcttt 25318092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 308
Target Start/End: Complemental strand, 26205620 - 26205586
Alignment:
Q  274 tgggaggaggagttggtagaggagtgtagggcttt 308  Q
    ||||||||||||||| |||||||||||||||||||    
T  26205620 tgggaggaggagttgctagaggagtgtagggcttt 26205586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 303
Target Start/End: Complemental strand, 29055813 - 29055763
Alignment:
Q  253 tggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 303  Q
    |||||| ||||||||||||  | ||||||||||||||||| ||||||||||    
T  29055813 tggcgtaggcggttgtgggtctaggaggaggagttggtaggggagtgtagg 29055763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 308
Target Start/End: Original strand, 333532 - 333577
Alignment:
Q  263 ggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 308  Q
    |||||||||| ||||| ||||||||| |||||||||||||| ||||    
T  333532 ggttgtgggcatgggatgaggagttgttagaggagtgtaggacttt 333577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 306
Target Start/End: Original strand, 5085885 - 5085926
Alignment:
Q  265 ttgtgggcttgggaggaggagttggtagaggagtgtagggct 306  Q
    |||||||| |||||||||||| || |||||||||||||||||    
T  5085885 ttgtgggcgtgggaggaggagatgttagaggagtgtagggct 5085926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 308
Target Start/End: Original strand, 17079048 - 17079093
Alignment:
Q  263 ggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 308  Q
    |||||||||||||||||||||||  | |||||||| ||||||||||    
T  17079048 ggttgtgggcttgggaggaggaggagttagaggagcgtagggcttt 17079093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 337
Target Start/End: Original strand, 17573501 - 17573586
Alignment:
Q  252 gtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcag 337  Q
    ||||||||| || || ||||  ||||||||||| ||| |||  |||||||||| ||| ||||| |||||  |||||||||||||||    
T  17573501 gtggcgtcgtcgtttatgggtatgggaggaggaattgttagtagagtgtagggatttattactgacagtcactttgcaggaatcag 17573586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 23065894 - 23065947
Alignment:
Q  253 tggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggct 306  Q
    ||||| || ||||||||||| ||||||||||| ||| |||||||||||| ||||    
T  23065894 tggcggcgtcggttgtgggcgtgggaggaggatttgctagaggagtgtaaggct 23065947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 304
Target Start/End: Original strand, 11060694 - 11060757
Alignment:
Q  238 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtaggg 304  Q
    |||||||||| || |||| |  || ||||||||||||||||||||||||   |||||||||||||||    
T  11060694 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggagt---tagaggagtgtaggg 11060757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 25350506 - 25350466
Alignment:
Q  263 ggttgtgggcttgggaggaggagttggtagaggagtgtagg 303  Q
    |||| ||||| ||||||||||||||||| ||||||||||||    
T  25350506 ggttatgggcgtgggaggaggagttggtggaggagtgtagg 25350466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 28253265 - 28252931
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    |||||||| |||||||||||||| ||||||||| ||||||||||||  |||||||| ||||| ||||||  |  ||||||||||||||| ||||| ||||    
T  28253265 tgttcttcttggtggagggagatagtgaggattagagatgggatagacgagggtggggagggttggttttcggtttgtgttaggaggagggtgggggatg 28253166  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    |  | ||||||||||||||||| |||||| ||||||| |||||||   || |||  || ||||| || || | ||| ||| | ||  |||||  |||| |    
T  28253165 gttccgatactgatttttggcgggattgtcggtgtggtgatgttctgtttcgtgagcgctttagacggctatatgatttggccgtcaacaaagtaatcac 28253066  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
     ||||||| ||||||  || |||||||||| || || || ||||||| |  ||||||||| ||||| ||||| |||||||| ||  | ||||||||||||    
T  28253065 ggttaggactatgtttttgttgggggtggaggttggtggtgaggcgtggtagtggcgtcgtcggttatgggcatgggaggatgacctagtagaggagtgt 28252966  T
Q  301 agggctttgttactaacagtttctttgcaggaatc 335  Q
    |||||||| ||||| ||||||| ||||||||||||    
T  28252965 agggctttattactgacagtttttttgcaggaatc 28252931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 192 - 362
Target Start/End: Complemental strand, 41207370 - 41207200
Alignment:
Q  192 atcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggta 291  Q
    ||||||| ||||||||||||||||| || |||||||||||||||| ||||||||||||   |||||||| ||||||||||| |||||||| |||||||||    
T  41207370 atcaatcacagttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcaatggcgtcgtcggttgtgggcatgggaggaagagttggta 41207271  T
Q  292 gaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacc 362  Q
    ||||||||||||| ||| ||| | |||||||| |||||||||||||||  ||| |||||| | ||||||||    
T  41207270 gaggagtgtagggttttattatttacagtttccttgcaggaatcagtggcagatagatggttgtggttacc 41207200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 12646081 - 12645749
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    |||||||| |||||||||||||| || |||||| ||||||||||||| |||||||| ||||  ||||||| |  ||||||||||||||| ||||||||||    
T  12646081 tgttcttcttggtggagggagatagtcaggattagagatgggataggcgagggtggggaggattggtttgcggattgtgttaggaggagggtgggagatg 12645982  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctc 200  Q
    | ||    || ||||||||||| ||||||||||||||   ||||||| | ||||  || |||||||| || | ||||||  ||||  | |||  |||| |    
T  12645981 gagccacaacagatttttggcgagattgttggtgtggtagtgttcctttgtgtgagcgctttaggcgactatatgacttagctgtcaataaagtaatcac 12645882  T
Q  201 agttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
    ||| ||||| |||||| || |||||||||| | ||| || |  |||| |  |||||| || || || ||||  ||| ||||||| |||||||||||||||    
T  12645881 agtaaggaacatgttcttgttgggggtggaggagggtggaggagcgtggcagtggcgacgtcgtttatgggtgtggaaggaggatttggtagaggagtgt 12645782  T
Q  301 agggctttgttactaacagtttctttgcaggaa 333  Q
    |||| ||| ||||||||| | ||||||||||||    
T  12645781 agggatttattactaacaatctctttgcaggaa 12645749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 75 - 335
Target Start/End: Complemental strand, 40177139 - 40176879
Alignment:
Q  75 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgccttttt 174  Q
    ||||||||||||||| ||||| ||||| |  ||||| ||||||||| | ||||||||||||||   ||||||  | ||||  || |||||||| |||| |    
T  40177139 ttgtgttaggaggagggtgggggatggagttgataccgatttttggtgagattgttggtgtggtagtgttccgttgtgtgaacgctttaggcgactttat 40177040  T
Q  175 gacttgtctgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggctt 274  Q
    |||||  |  |  | ||||||||| | || ||||| |||||| || |||||||||| |  || ||||  |||| |  ||||||||| ||||| ||||  |    
T  40177039 gacttagccatcaataaatcaatcacggtgaggaagatgttcttgttgggggtggaggatggtgggggagcgtggcagtggcgtcgccggttatgggtgt 40176940  T
Q  275 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatc 335  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  40176939 gggaggaggacttggtagaggagtgtagggctttattactaacagtctctttgcaggaatc 40176879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 14440289 - 14440155
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||||||||||||||||||||| |  |||||| ||||||||||||| |||||||| ||||| |||||||    ||||||  ||||||| ||| | ||||    
T  14440289 tgttcttcgtggtggagggagatagctaggattagagatgggataggcgagggtggggagggctggtttgcaggttgtgt--ggaggagggtgagggatg 14440192  T
Q  101 gggcagatactgatttttggcgtgattgttggtgtgg 137  Q
    | || ||||| ||| ||||||| ||||||||||||||    
T  14440191 gagccgataccgatatttggcgagattgttggtgtgg 14440155  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 33515802 - 33515902
Alignment:
Q  1 tgttcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggagagtgggagatg 100  Q
    ||||||||||||||||||||||| || | ||||  ||| |||||| |||||||||| ||||| ||||||  |  ||||||||||||||| ||||| ||||    
T  33515802 tgttcttcgtggtggagggagatagtcaagattaaagacgggatatgtgagggtggggagggttggtttacggattgtgttaggaggagggtgggggatg 33515901  T
Q  101 g 101  Q
    |    
T  33515902 g 33515902  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 253 - 308
Target Start/End: Complemental strand, 36804205 - 36804150
Alignment:
Q  253 tggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 308  Q
    ||||||||  |||||||||| ||||||||||| ||| |||||||||||||||||||    
T  36804205 tggcgtcgaaggttgtgggcgtgggaggaggacttgttagaggagtgtagggcttt 36804150  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 18844490 - 18844530
Alignment:
Q  263 ggttgtgggcttgggaggaggagttggtagaggagtgtagg 303  Q
    |||||||||| ||||||||||||||||| ||||||||||||    
T  18844490 ggttgtgggcgtgggaggaggagttggtggaggagtgtagg 18844530  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 253 - 308
Target Start/End: Complemental strand, 36804420 - 36804365
Alignment:
Q  253 tggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 308  Q
    ||||||||  |||||| ||| ||||||||||| ||| |||||||||||||||||||    
T  36804420 tggcgtcgaaggttgtaggcgtgggaggaggacttgttagaggagtgtagggcttt 36804365  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 333
Target Start/End: Original strand, 38604247 - 38604306
Alignment:
Q  274 tgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 333  Q
    |||||||| || ||||||||||||||||||  |||  |||| ||||||||||||||||||    
T  38604247 tgggaggaagacttggtagaggagtgtaggaatttagtacttacagtttctttgcaggaa 38604306  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 308
Target Start/End: Complemental strand, 22052899 - 22052865
Alignment:
Q  274 tgggaggaggagttggtagaggagtgtagggcttt 308  Q
    ||||||||||||||| |||||||||||||||||||    
T  22052899 tgggaggaggagttgctagaggagtgtagggcttt 22052865  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 44547706 - 44547756
Alignment:
Q  264 gttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttact 314  Q
    ||||| ||| |||||||||||||||||||||||||||| | |||| |||||    
T  44547706 gttgttggcatgggaggaggagttggtagaggagtgtatgactttattact 44547756  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 300
Target Start/End: Original strand, 12808007 - 12808044
Alignment:
Q  263 ggttgtgggcttgggaggaggagttggtagaggagtgt 300  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  12808007 ggttgtgggcgtgggaggaggcgttggtagaggagtgt 12808044  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 333
Target Start/End: Complemental strand, 14440040 - 14439959
Alignment:
Q  252 gtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 333  Q
    ||||||||| || || ||||  ||||||||||| ||| |||  ||||||| || ||| ||||||||||| ||||||||||||    
T  14440040 gtggcgtcgtcgtttatgggtatgggaggaggaattgttagtagagtgtatggatttattactaacagtctctttgcaggaa 14439959  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 16315632 - 16315672
Alignment:
Q  263 ggttgtgggcttgggaggaggagttggtagaggagtgtagg 303  Q
    |||||||||| ||||||||||  ||||||||||||||||||    
T  16315632 ggttgtgggcgtgggaggaggccttggtagaggagtgtagg 16315672  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 18489091 - 18489051
Alignment:
Q  263 ggttgtgggcttgggaggaggagttggtagaggagtgtagg 303  Q
    |||||||||| ||||||||||| || |||||||||||||||    
T  18489091 ggttgtgggcgtgggaggaggaattagtagaggagtgtagg 18489051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 331
Target Start/End: Complemental strand, 31093536 - 31093468
Alignment:
Q  263 ggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcagg 331  Q
    |||| ||||| |||||||| ||||| ||||||||||||||| ||||  |||| || ||||| |||||||    
T  31093536 ggttatgggcgtgggaggatgagttagtagaggagtgtaggactttactactgactgtttcattgcagg 31093468  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 308
Target Start/End: Original strand, 33276209 - 33276265
Alignment:
Q  252 gtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 308  Q
    ||||||||| ||||||| ||| ||||||||||| ||| || ||||||||||| ||||    
T  33276209 gtggcgtcgtcggttgtaggcatgggaggaggaattgttaaaggagtgtaggacttt 33276265  T

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Target: scaffold1350 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1350
Description:

Target: scaffold1350; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 86 - 1
Alignment:
Q  4 tcttcgtggtggagggagatcgtgaggattggagatgggataggtgagggtggcgagggatggtttgagtcttgtgttaggaggag 89  Q
    ||||| |||||||||||||| || || ||| ||||||||||||| |||||||  ||||| ||||||| |  |||||||||||||||    
T  86 tcttcttggtggagggagatagtcagaattagagatgggataggcgagggtgtggagggttggtttgcggattgtgttaggaggag 1  T

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Target: scaffold0179 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 308
Target Start/End: Complemental strand, 7836 - 7766
Alignment:
Q  238 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 308  Q
    |||||||||| ||||||| |  || |||||||||| ||||||||||||  | |||||||||||||||||||    
T  7836 ggggaggcgtggaggtggaggaggaggttgtgggcatgggaggaggaggagttagaggagtgtagggcttt 7766  T

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Target: scaffold0179; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 308
Target Start/End: Complemental strand, 12770 - 12700
Alignment:
Q  238 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 308  Q
    |||||||||| ||||||| |  || |||||||||| ||||||||||||  | |||||||||||||||||||    
T  12770 ggggaggcgtggaggtggtggaggaggttgtgggcatgggaggaggaggagttagaggagtgtagggcttt 12700  T

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Target: scaffold0112 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 308
Target Start/End: Original strand, 15482 - 15552
Alignment:
Q  238 ggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 308  Q
    ||||||| || ||||||||||||  | |||||||| |||||||||||  || |||||||||||||||||||    
T  15482 ggggaggggtggaggtggcgtcgcagattgtgggcgtgggaggaggatatgttagaggagtgtagggcttt 15552  T

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Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 308
Target Start/End: Complemental strand, 182412 - 182367
Alignment:
Q  263 ggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 308  Q
    |||||||||||||||||||||||  | |||||||||||||||||||    
T  182412 ggttgtgggcttgggaggaggaggagttagaggagtgtagggcttt 182367  T

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Target: scaffold0555 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 303
Target Start/End: Complemental strand, 7949 - 7911
Alignment:
Q  265 ttgtgggcttgggaggaggagttggtagaggagtgtagg 303  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  7949 ttgtgggtgtgggaggaggagttggtagaggagtgtagg 7911  T

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Target: scaffold0043 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 303
Target Start/End: Original strand, 34468 - 34506
Alignment:
Q  265 ttgtgggcttgggaggaggagttggtagaggagtgtagg 303  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  34468 ttgtgggtgtgggaggaggagttggtagaggagtgtagg 34506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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