View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1931_high_2 (Length: 649)

Name: NF1931_high_2
Description: NF1931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1931_high_2
NF1931_high_2
[»] chr5 (1 HSPs)
chr5 (16-633)||(42205192-42205815)


Alignment Details
Target: chr5 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 16 - 633
Target Start/End: Complemental strand, 42205815 - 42205192
Alignment:
Q  16 cataggaacttttgtccttaatgcatggcacacgtgcattagagtcagcaagtgttaaattcgatgtacatcaattggacttttgaatcaccaataataa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42205815 cataggaacttttgtccttaatgcatggcacacgtgcattagagtcagcaagtgttaaattcgatgtacatcaattggacttttgaatcaccaataataa 42205716  T
Q  116 taatgcaaattgattgaaccataaacatgatttattgacataatgaaaatctaatcaataagctatagtaatcataggtccctccctagccatccaaaat 215  Q
    |   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  42205715 t---gcaaattgattgaaccataaacatgatttattgacataatgaaaatctaatcaataagctatagcaatcatagatccctccctagccatccaaaat 42205619  T
Q  216 tatttatgaagaactgccaagttactcttccaaaatccacacgtttaggagtcttgatccttatcaatatcacaaatctttgtcaattagaaacaattgg 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42205618 tatttatgaagaactgccaagttactcttccaaaatccacacgtttaggagtcttgatccttatcaatatcacaaatctttgtcaattagaaacaattgg 42205519  T
Q  316 agtctttgtttctttctaattattgttcaattttctccaacaactattgctcgccaaaatcaaagagaaaagaccaaataagtcaaatcaagcattgcca 415  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42205518 agtcgttgtttctttctaattattgttcaattttctccaacaactattgctcgccaaaatcaaagagaaaagaccaaataagtcaaatcaagcattgcca 42205419  T
Q  416 tttatcagtttttt---------gtcaggcattgccatttttctataatggagatgtatcacctactccatagcatgagcaaactcgttaaaaagggttt 506  Q
    ||||||  ||||||         |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  42205418 tttatcttttttttttttttttggtcaggcattgccatttttctataatggagatgtatcacctactccgtagcatgagcaaactcgttaaaaagggttt 42205319  T
Q  507 aattagtgcatttaatgtatatatgtttctgccgtgataaaaatattaaacactcgatgaaattaaagttttaaaaaatagtttatgttttggaccggtc 606  Q
    |||||||||||||||||||| | ||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||  ||    
T  42205318 aattagtgcatttaatgtatgtttgtttctgcggtgataaaaatattaaatactcgatgaaattgaagttttaaaaaatagtttctgttttggaccaatc 42205219  T
Q  607 agaagaccaatcatgtgacgacacgtg 633  Q
    ||||||||||||||||||| |||||||    
T  42205218 agaagaccaatcatgtgacaacacgtg 42205192  T

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