View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1931_low_1 (Length: 711)

Name: NF1931_low_1
Description: NF1931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1931_low_1
NF1931_low_1
[»] chr5 (1 HSPs)
chr5 (11-695)||(42205192-42205882)


Alignment Details
Target: chr5 (Bit Score: 584; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 11 - 695
Target Start/End: Complemental strand, 42205882 - 42205192
Alignment:
Q  11 catagggaataggggtagagatttcatgattgtggaccccttaatatatggtctacaagtgtaacatcataggaacttttgtccttaatgcatggcacac 110  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42205882 catagagaataggggtagagatttcatgattgtggaccccttaatatatggtctacaagtgtaacatcataggaacttttgtccttaatgcatggcacac 42205783  T
Q  111 gtgcattagagtcagcaagtgttaaattcgatgtacatcaattggacttttgaatcaccaataataataatgcaaattgattgaaccataaacatgattt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||    
T  42205782 gtgcattagagtcagcaagtgttaaattcgatgtacatcaattggacttttgaatcaccaataataat---gcaaattgattgaaccataaacatgattt 42205686  T
Q  211 attgacataatgaaaatctaatcaataagctatagtaatcataggtccctccctagccatccaaaattatttatgaagaactgccaagttactcttccaa 310  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42205685 attgacataatgaaaatctaatcaataagctatagcaatcatagatccctccctagccatccaaaattatttatgaagaactgccaagttactcttccaa 42205586  T
Q  311 aatccacacgtttaggagtcttgatccttatcaatatcacaaatctttgtcaattagaaacaattggagtctttgtttctttctaattattgttcaattt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42205585 aatccacacgtttaggagtcttgatccttatcaatatcacaaatctttgtcaattagaaacaattggagtcgttgtttctttctaattattgttcaattt 42205486  T
Q  411 tctccaacaactattgctcgccaaaatcaaagagaaaagaccaaataagtcaaatcaagcattgccatttatcagtttttt---------gtcaggcatt 501  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||         ||||||||||    
T  42205485 tctccaacaactattgctcgccaaaatcaaagagaaaagaccaaataagtcaaatcaagcattgccatttatcttttttttttttttttggtcaggcatt 42205386  T
Q  502 gccatttttctataatggagatgtatcacctactccatagcatgagcaaactcgttaaaaagggtttaattagtgcatttaatgtatatatgtttctgcc 601  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||     
T  42205385 gccatttttctataatggagatgtatcacctactccgtagcatgagcaaactcgttaaaaagggtttaattagtgcatttaatgtatgtttgtttctgcg 42205286  T
Q  602 gtgataaaaatattaaacactcgatgaaattaaagttttaaaaaatagtttatgttttggaccggtcagaagaccaatcatgtgacgacacgtg 695  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||  ||||||||||||||||||||| |||||||    
T  42205285 gtgataaaaatattaaatactcgatgaaattgaagttttaaaaaatagtttctgttttggaccaatcagaagaccaatcatgtgacaacacgtg 42205192  T

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