View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1931_low_10 (Length: 237)

Name: NF1931_low_10
Description: NF1931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1931_low_10
NF1931_low_10
[»] chr1 (30 HSPs)
chr1 (1-222)||(9319802-9320023)
chr1 (1-222)||(9350119-9350340)
chr1 (5-223)||(9318283-9318501)
chr1 (1-223)||(9255017-9255239)
chr1 (1-186)||(9486178-9486363)
chr1 (2-187)||(9104981-9105166)
chr1 (1-191)||(9399563-9399753)
chr1 (1-191)||(9432826-9433016)
chr1 (1-213)||(9142860-9143072)
chr1 (2-117)||(9384230-9384345)
chr1 (2-112)||(9096799-9096909)
chr1 (11-119)||(9056564-9056672)
chr1 (2-117)||(8964517-8964632)
chr1 (1-119)||(9082528-9082646)
chr1 (2-119)||(9234049-9234166)
chr1 (2-117)||(8999668-8999783)
chr1 (1-191)||(9453813-9454003)
chr1 (5-213)||(8941926-8942134)
chr1 (2-190)||(8932033-8932221)
chr1 (2-190)||(8955955-8956143)
chr1 (2-117)||(8874058-8874173)
chr1 (2-113)||(8920705-8920816)
chr1 (11-189)||(9152423-9152601)
chr1 (2-116)||(9488556-9488670)
chr1 (1-116)||(11010896-11011011)
chr1 (1-116)||(10979330-10979445)
chr1 (2-116)||(9463962-9464075)
chr1 (2-116)||(10974252-10974366)
chr1 (1-116)||(10901595-10901710)
chr1 (159-223)||(9348696-9348760)
[»] chr3 (1 HSPs)
chr3 (1-223)||(9159491-9159713)
[»] chr6 (1 HSPs)
chr6 (1-216)||(15927185-15927400)


Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 9320023 - 9319802
Alignment:
Q  1 agcaagaggaacaattggatatatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9320023 agcaagaggaacaattggatatatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttg 9319924  T
Q  101 atggaaatggcaagtaagaaaagaaacttaaatccacatgccgaacgttcaagtcaaattttctttcccatttggatttataatcaattggctgatgaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9319923 atggaaatggcaagtaagaaaagaaacttaaatccacatgccgaacgttcaagtcaaattttctttcccatttggatttataatcaattggctgatgaaa 9319824  T
Q  201 gggaaatagaaatggatgaaat 222  Q
    ||||||||||||||||||||||    
T  9319823 gggaaatagaaatggatgaaat 9319802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 9350340 - 9350119
Alignment:
Q  1 agcaagaggaacaattggatatatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttg 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9350340 agcaagaggaacaattggatatatggctcctgagttgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttg 9350241  T
Q  101 atggaaatggcaagtaagaaaagaaacttaaatccacatgccgaacgttcaagtcaaattttctttcccatttggatttataatcaattggctgatgaaa 200  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9350240 atggaaatcgcaagtaagaaaagaaatttaaatccacatgccgaacgttcaagtcaaattttctttcccatttggatttataatcaattggctgatgaaa 9350141  T
Q  201 gggaaatagaaatggatgaaat 222  Q
    ||||||||||||||||||||||    
T  9350140 gggaaatagaaatggatgaaat 9350119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 9318283 - 9318501
Alignment:
Q  5 agaggaacaattggatatatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttgatgg 104  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  9318283 agaggaacaattggatacatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggccgatgtatatagctttggaatgcttttgatgg 9318382  T
Q  105 aaatggcaagtaagaaaagaaacttaaatccacatgccgaacgttcaagtcaaattttctttcccatttggatttataatcaattggctgatgaaaggga 204  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||| || | |||    
T  9318383 aaatggcaagtaagaaaagaaatttaaatccacatgccgatcgttcaagtcaaattttctttcccatttggatttataatcaattgattgaagacaagga 9318482  T
Q  205 aatagaaatggatgaaatt 223  Q
     |||||||| |||||||||    
T  9318483 gatagaaatagatgaaatt 9318501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 9255017 - 9255239
Alignment:
Q  1 agcaagaggaacaattggatatatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttg 100  Q
    |||||| || ||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||    
T  9255017 agcaagggggacaattggatacatggctcctgaattgttctaccaaaatattggaggagtatcgtacaaggccgatgtatatagctttggaatgcttttg 9255116  T
Q  101 atggaaatggcaagtaagaaaagaaacttaaatccacatgccgaacgttcaagtcaaattttctttcccatttggatttataatcaattggctgatgaaa 200  Q
    || ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||  ||| ||||    
T  9255117 attgaaatggcaagtaagaaaagaaatttaaatccacatgccgatcgttcaagtcaaattttctttcccatttggatttatgatcaattgattgaagaaa 9255216  T
Q  201 gggaaatagaaatggatgaaatt 223  Q
     ||| ||||||||||||||||||    
T  9255217 aggagatagaaatggatgaaatt 9255239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 9486178 - 9486363
Alignment:
Q  1 agcaagaggaacaattggatatatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttg 100  Q
    ||||||||||||||| || || ||||||||||||||||||||| ||||||| |||||| |||| |||||||||||  | |||||||| ||||||||||||    
T  9486178 agcaagaggaacaatcggttacatggctcctgaattgttctaccaaaatatcggaggaatatcatacaaggctgacatgtatagctttggaatgcttttg 9486277  T
Q  101 atggaaatggcaagtaagaaaagaaacttaaatccacatgccgaacgttcaagtcaaattttctttcccatttggatttataatca 186  Q
    || |||||||||||||  | |||||| || ||| ||||||| || | |||||||||| ||| ||||||| ||||||||||| ||||    
T  9486278 attgaaatggcaagtagaagaagaaatttgaatacacatgctgagcattcaagtcaactttactttcccttttggatttatgatca 9486363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 2 - 187
Target Start/End: Original strand, 9104981 - 9105166
Alignment:
Q  2 gcaagaggaacaattggatatatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttga 101  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||| || ||||||||||    
T  9104981 gcaagaggtacaattggatatatggctccagaattgttctacaaaaatattgggggagtttcctataaggctgatgtttatagctttgggatgcttttga 9105080  T
Q  102 tggaaatggcaagtaaga-aaagaaacttaaatccacatgccgaacgttcaagtcaaattttctttcccatttggatttataatcaa 187  Q
    |||| |||||| | |||| ||| || |||||| ||| ||||  ||| ||||||||| || |  |||||| ||||||||||| |||||    
T  9105081 tggagatggcaggcaagagaaaaaaccttaaaacca-atgcacaacattcaagtcagatatattttcccttttggatttatgatcaa 9105166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 9399753 - 9399563
Alignment:
Q  1 agcaagaggaacaattggatatatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttg 100  Q
    |||||||||||||||||| || |||||||||||| |||||| | |||||||||| ||| |||| || ||||||||||| |||||||| || |||||||||    
T  9399753 agcaagaggaacaattggttacatggctcctgaactgttcttccaaaatattgggggaatatcatataaggctgatgtgtatagctttggtatgcttttg 9399654  T
Q  101 atggaaatggcaagtaagaaaagaaacttaaatccacatgccgaacgttcaagtcaaattttctttcccatttggatttataatcaattgg 191  Q
    || ||||| ||||||| || |||||| || ||| ||||||| || | |||||||||| |||  || ||| ||||||||||| |||||||||    
T  9399653 attgaaattgcaagtaggagaagaaatttgaattcacatgctgagcattcaagtcaactttatttccccttttggatttatgatcaattgg 9399563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 9432826 - 9433016
Alignment:
Q  1 agcaagaggaacaattggatatatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttg 100  Q
    |||||||||||||||||| || ||||||||||||||||||||| ||||||||||  || ||||  ||||||| ||||| ||||| || ||||||||||||    
T  9432826 agcaagaggaacaattggttacatggctcctgaattgttctaccaaaatattgggagaatatcacacaaggccgatgtgtatagttttggaatgcttttg 9432925  T
Q  101 atggaaatggcaagtaagaaaagaaacttaaatccacatgccgaacgttcaagtcaaattttctttcccatttggatttataatcaattgg 191  Q
    || ||||| |||||||  | |||||| || ||| ||||||| || | |||||||||| |||  || ||| ||||||||||| |||||||||    
T  9432926 attgaaatcgcaagtagaagaagaaatttgaattcacatgctgagcattcaagtcaactttatttccccttttggatttatgatcaattgg 9433016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 9142860 - 9143072
Alignment:
Q  1 agcaagaggaacaattggatatatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttg 100  Q
    ||||||||| || ||||||||||||||||| || |||||||||||||||||||| ||||| ||||| ||||| ||||| ||||| ||||| |||||||||    
T  9142860 agcaagaggtactattggatatatggctccggagttgttctacaaaaatattgggggagtgtcctataaggccgatgtttatagtttcgggatgcttttg 9142959  T
Q  101 atggaaatggcaagtaagaaaagaaacttaaatccacatgccgaacgttcaagtcaaattttctttcccatttggatttataatcaattggctgatgaaa 200  Q
    ||||| ||||||||||| | || |||| ||||| | ||||| ||   |||||| ||| ||| ||||||  | ||||||||| ||||||| ||  | |||     
T  9142960 atggagatggcaagtaaaagaaaaaacctaaatgcccatgcggagtattcaagccaactttactttcctttatggatttatgatcaatttgcacaagaag 9143059  T
Q  201 gggaaatagaaat 213  Q
    | |||||||||||    
T  9143060 gagaaatagaaat 9143072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 117
Target Start/End: Complemental strand, 9384345 - 9384230
Alignment:
Q  2 gcaagaggaacaattggatatatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttga 101  Q
    |||||||||||  | || || |||||||||||| ||||||||||||||||||| ||||| || ||||||||||||||||||||||| |||||||||||||    
T  9384345 gcaagaggaactttgggttacatggctcctgaactgttctacaaaaatattggtggagtgtcttacaaggctgatgtatatagctttggaatgcttttga 9384246  T
Q  102 tggaaatggcaagtaa 117  Q
    ||||||||||| ||||    
T  9384245 tggaaatggcaggtaa 9384230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 9096799 - 9096909
Alignment:
Q  2 gcaagaggaacaattggatatatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttga 101  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| || |||||||| |||||||| || ||||||||||    
T  9096799 gcaagaggtacaattggatatatggctccagaattgttctacaaaaatattgggggagtttcctataaagctgatgtttatagctttgggatgcttttga 9096898  T
Q  102 tggaaatggca 112  Q
    |||| ||||||    
T  9096899 tggagatggca 9096909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 9056672 - 9056564
Alignment:
Q  11 acaattggatatatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttgatggaaatgg 110  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||| || || ||||||||||| ||||| || || |||||||||||||||||||    
T  9056672 acaattggatatatggctcctgaattgttttacaaaaatattggtggagtgtcgtataaggctgatgtttatagttttggtatgcttttgatggaaatgg 9056573  T
Q  111 caagtaaga 119  Q
    |||| ||||    
T  9056572 caagcaaga 9056564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 117
Target Start/End: Complemental strand, 8964632 - 8964517
Alignment:
Q  2 gcaagaggaacaattggatatatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttga 101  Q
    |||||||| || ||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||| ||||||||||| |||||||| || ||||||||||    
T  8964632 gcaagaggtaccattggatatatggctccagaattgttctataaaaatattgggggagtgtcctataaggctgatgtttatagctttgggatgcttttga 8964533  T
Q  102 tggaaatggcaagtaa 117  Q
    |||| |||||| ||||    
T  8964532 tggagatggcaggtaa 8964517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 9082528 - 9082646
Alignment:
Q  1 agcaagaggaacaattggatatatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttg 100  Q
    ||||||||| ||||||||||||||||||||||| || |||||||||||||| || ||||| || |||||||||||||| ||||| || || |||||||||    
T  9082528 agcaagaggtacaattggatatatggctcctgagttattctacaaaaatatagggggagtgtcgtacaaggctgatgtttatagttttgggatgcttttg 9082627  T
Q  101 atggaaatggcaagtaaga 119  Q
    ||||| |||||||| ||||    
T  9082628 atggagatggcaagcaaga 9082646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 119
Target Start/End: Original strand, 9234049 - 9234166
Alignment:
Q  2 gcaagaggaacaattggatatatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttga 101  Q
    |||||||||||  | || || |||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||| || || |||||||||||||    
T  9234049 gcaagaggaactttgggttacatggctcctgaattgttctacaaaaatattggtggagtgtcgtacaaagctgatgtatacagttttggaatgcttttga 9234148  T
Q  102 tggaaatggcaagtaaga 119  Q
    ||||||||||| ||||||    
T  9234149 tggaaatggcaggtaaga 9234166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 2 - 117
Target Start/End: Complemental strand, 8999783 - 8999668
Alignment:
Q  2 gcaagaggaacaattggatatatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttga 101  Q
    |||||||| || ||||||||||||||||| ||||||||||| ||||||||||| ||||| || || ||||||||||| |||||||| || ||||||||||    
T  8999783 gcaagaggtaccattggatatatggctccagaattgttctataaaaatattgggggagtgtcttataaggctgatgtttatagctttgggatgcttttga 8999684  T
Q  102 tggaaatggcaagtaa 117  Q
    |||| |||||| ||||    
T  8999683 tggagatggcaggtaa 8999668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 9453813 - 9454003
Alignment:
Q  1 agcaagaggaacaattggatatatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttg 100  Q
    |||||||||||||||||| || ||||||||||||||||||||| ||||||||||  || ||||  ||||||| ||||| ||||| || ||||||||| ||    
T  9453813 agcaagaggaacaattggttacatggctcctgaattgttctaccaaaatattgggagaatatcacacaaggccgatgtgtatagttttggaatgcttctg 9453912  T
Q  101 atggaaatggcaagtaagaaaagaaacttaaatccacatgccgaacgttcaagtcaaattttctttcccatttggatttataatcaattgg 191  Q
    || ||||| ||||||| ||  ||||| || ||| ||||||| || | |||||| ||| |||   | ||| ||||||||||| |||||||||    
T  9453913 attgaaattgcaagtaggagtagaaatttgaattcacatgctgagcattcaagccaactttatatccccttttggatttatgatcaattgg 9454003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 213
Target Start/End: Complemental strand, 8942134 - 8941926
Alignment:
Q  5 agaggaacaattggatatatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttgatgg 104  Q
    ||||| |||||||| || ||||| || |||||||||||||||||||||||   ||| ||||| || || ||||| |||||||| |||||||| || ||||    
T  8942134 agaggtacaattggttacatggcaccagaattgttctacaaaaatattggtaaagtttcctataaagccgatgtgtatagctttggaatgctcttaatgg 8942035  T
Q  105 aaatggcaagtaagaaaagaaacttaaatccacatgccgaacgttcaagtcaaattttctttcccatttggatttataatcaattggctgatgaaaggga 204  Q
    |||| ||||  | || |||||| |||||  || |||| ||   |||||| |||||||||||||||  ||||||||| ||| |||||| ||| ||||||||    
T  8942034 aaatagcaaacaggagaagaaatttaaactcaaatgcagatgattcaagccaaattttctttccctattggatttacaatgaattggttgaagaaaggga 8941935  T
Q  205 aatagaaat 213  Q
     ||||||||    
T  8941934 gatagaaat 8941926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 190
Target Start/End: Complemental strand, 8932221 - 8932033
Alignment:
Q  2 gcaagaggaacaattggatatatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttga 101  Q
    ||||||||||||||||| || ||||| || |||||||||||||||||||||||   ||| ||||| ||||| ||||| |||||||| |||||||| || |    
T  8932221 gcaagaggaacaattggttacatggcaccagaattgttctacaaaaatattggtaaagtttcctataaggccgatgtgtatagctttggaatgctcttaa 8932122  T
Q  102 tggaaatggcaagtaagaaaagaaacttaaatccacatgccgaacgttcaagtcaaattttctttcccatttggatttataatcaattg 190  Q
    ||||||| ||||  | || |||||| || ||  || |||| ||   |||||| |||||||||||||||  ||||||||| ||| |||||    
T  8932121 tggaaatagcaaacaggagaagaaatttgaactcaaatgcagatgattcaagccaaattttctttccctattggatttacaatgaattg 8932033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 190
Target Start/End: Complemental strand, 8956143 - 8955955
Alignment:
Q  2 gcaagaggaacaattggatatatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttga 101  Q
    ||||||||||||||||| || |||||||| ||||| |||||||||||||||||   ||| ||||| ||||| ||||| |||||||| |||||||| || |    
T  8956143 gcaagaggaacaattggttacatggctccggaattattctacaaaaatattggtaaagtttcctataaggccgatgtgtatagctttggaatgctcttaa 8956044  T
Q  102 tggaaatggcaagtaagaaaagaaacttaaatccacatgccgaacgttcaagtcaaattttctttcccatttggatttataatcaattg 190  Q
    ||||||| ||||  | || |||||| || ||  || |||| ||   |||||| |||||||||||||||  ||||||||| ||| |||||    
T  8956043 tggaaatagcaaacaggagaagaaatttgaactcaaatgcagatgattcaagccaaattttctttccctattggatttacaatgaattg 8955955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 2 - 117
Target Start/End: Original strand, 8874058 - 8874173
Alignment:
Q  2 gcaagaggaacaattggatatatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttga 101  Q
    |||||||| || ||||||||||||||||| |||||||| || ||||||||||| ||||| ||||| ||||||||||| ||||| || || ||||||||||    
T  8874058 gcaagaggtaccattggatatatggctccagaattgttttataaaaatattggtggagtgtcctataaggctgatgtttatagttttgggatgcttttga 8874157  T
Q  102 tggaaatggcaagtaa 117  Q
    |||  |||||| ||||    
T  8874158 tggtgatggcaggtaa 8874173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 2 - 113
Target Start/End: Complemental strand, 8920816 - 8920705
Alignment:
Q  2 gcaagaggaacaattggatatatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttga 101  Q
    ||||||||||||||||| || ||||| || || ||||||||||||||||||||   ||| ||||| ||||| |||||||||||||| |||||||| ||||    
T  8920816 gcaagaggaacaattggttacatggcaccagagttgttctacaaaaatattggtaaagtctcctataaggccgatgtatatagctttggaatgctcttga 8920717  T
Q  102 tggaaatggcaa 113  Q
    ||||||| ||||    
T  8920716 tggaaatagcaa 8920705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 189
Target Start/End: Original strand, 9152423 - 9152601
Alignment:
Q  11 acaattggatatatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttgatggaaatgg 110  Q
    |||||||||||||||||||  |||||||| |||| |||||| || ||||| ||||| ||||| ||||| ||||| || || |||||||||||||| |||     
T  9152423 acaattggatatatggctctagaattgttttacataaatatcgggggagtgtcctataaggccgatgtttatagttttgggatgcttttgatggagatga 9152522  T
Q  111 caagtaagaaaagaaacttaaatccacatgccgaacgttcaagtcaaattttctttcccatttggatttataatcaatt 189  Q
    ||||||| |  | |||||||||| |  | |  || | |||||||||| ||| ||||||  |||| ||||||||||||||    
T  9152523 caagtaaaagcaaaaacttaaattccgaagaagagcattcaagtcaactttactttccgttttgaatttataatcaatt 9152601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 116
Target Start/End: Complemental strand, 9488670 - 9488556
Alignment:
Q  2 gcaagaggaacaattggatatatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttga 101  Q
    ||||||||||| || ||||| ||||| || ||||||||||| || ||||||||||||||||| ||||| || ||||| |||||||| |||||| | || |    
T  9488670 gcaagaggaactatgggatacatggcaccagaattgttctataagaatattggaggagtatcgtacaaagcagatgtttatagctttggaatgttgttaa 9488571  T
Q  102 tggaaatggcaagta 116  Q
    |||||||||| ||||    
T  9488570 tggaaatggcgagta 9488556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 11011011 - 11010896
Alignment:
Q  1 agcaagaggaacaattggatatatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttg 100  Q
    |||||||||||| |||||||||||||| |||||| | ||||||| |||| ||||   | |||| ||||| |||||||||||||| || || ||| | |||    
T  11011011 agcaagaggaaccattggatatatggcccctgaactattctacagaaatgttggcacaatatcttacaaagctgatgtatatagttttgggatgttgttg 11010912  T
Q  101 atggaaatggcaagta 116  Q
    ||||| ||||||||||    
T  11010911 atggagatggcaagta 11010896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 10979445 - 10979330
Alignment:
Q  1 agcaagaggaacaattggatatatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttg 100  Q
    ||||||||| || |||||||| |||||||||||| | ||||||| |||| ||||   | |||| ||||| |||||||||||||| || || ||| | |||    
T  10979445 agcaagagggaccattggatacatggctcctgaactattctacagaaatgttggcacaatatcttacaaagctgatgtatatagttttgggatgttgttg 10979346  T
Q  101 atggaaatggcaagta 116  Q
    ||||| ||||||||||    
T  10979345 atggagatggcaagta 10979330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 116
Target Start/End: Complemental strand, 9464075 - 9463962
Alignment:
Q  2 gcaagaggaacaattggatatatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttga 101  Q
    ||||||||||| || ||||| ||||| || || |||||||| || || |||||||||||||| ||||| || ||||| |||||||| |||||| | || |    
T  9464075 gcaagaggaactatgggatacatggcaccagagttgttctataagaacattggaggagtatcgtacaaagcagatgtttatagctt-ggaatgttgttaa 9463977  T
Q  102 tggaaatggcaagta 116  Q
    |||||||||| ||||    
T  9463976 tggaaatggcgagta 9463962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 116
Target Start/End: Complemental strand, 10974366 - 10974252
Alignment:
Q  2 gcaagaggaacaattggatatatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttga 101  Q
    ||||||||||| |||||||| ||||| |||||| ||||||||| |||||||||   | |||| ||||| |||||||| |||||||| || ||| | || |    
T  10974366 gcaagaggaacgattggatacatggcccctgaactgttctacagaaatattggcacaatatcttacaaagctgatgtctatagctttgggatgttgttaa 10974267  T
Q  102 tggaaatggcaagta 116  Q
    |||| ||||| ||||    
T  10974266 tggagatggcgagta 10974252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 10901710 - 10901595
Alignment:
Q  1 agcaagaggaacaattggatatatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttg 100  Q
    |||||||||||| |||||||| ||||| |||||||| ||||||| |||| | ||   | ||||  |||| |||||||| ||||| || |||||| | |||    
T  10901710 agcaagaggaaccattggatacatggcccctgaattattctacagaaatgtcggcacaatatctcacaaagctgatgtctatagttttggaatgttgttg 10901611  T
Q  101 atggaaatggcaagta 116  Q
    ||||| ||||||||||    
T  10901610 atggagatggcaagta 10901595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 9348696 - 9348760
Alignment:
Q  159 ttttctttcccatttggatttataatcaattggctgatgaaagggaaatagaaatggatgaaatt 223  Q
    ||||||||||  |||||||||||||||||| |  ||| |||| ||| ||||| ||||||||||||    
T  9348696 ttttctttccgttttggatttataatcaatggattgaagaaaaggagatagagatggatgaaatt 9348760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 9159713 - 9159491
Alignment:
Q  1 agcaagaggaacaattggatatatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttg 100  Q
    |||||||||||||||||| ||||||||||| || |||||||||||||||||||| |||||||| |||||||||||||| ||||| || ||||||||||||    
T  9159713 agcaagaggaacaattggttatatggctcccgagttgttctacaaaaatattggtggagtatcatacaaggctgatgtttatagttttggaatgcttttg 9159614  T
Q  101 atggaaatggcaagtaagaaaagaaacttaaatccacatgccgaacgttcaagtcaaattttctttcccatttggatttataatcaattggctgatgaaa 200  Q
    ||||||||||||||||||  |||||| |||||||||||||| || |||||||| ||| |||||||||||  |||||||||||||||||||  ||| ||||    
T  9159613 atggaaatggcaagtaagcgaagaaatttaaatccacatgcggatcgttcaagccaacttttctttccctattggatttataatcaattgattgaagaaa 9159514  T
Q  201 gggaaatagaaatggatgaaatt 223  Q
      || ||||| ||||||||||||    
T  9159513 acgagatagagatggatgaaatt 9159491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 15927185 - 15927400
Alignment:
Q  1 agcaagaggaacaattggatatatggctcctgaattgttctacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttg 100  Q
    |||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| || || ||||| |||||||||||||| ||||||||||||    
T  15927185 agcaagaggaacgattggatacatggctcctgaattattctacaaaaatattggaggagtttcgtataaggccgatgtatatagctttggaatgcttttg 15927284  T
Q  101 atggaaatggcaagtaagaaaagaaacttaaatccacatgccgaacgttcaagtcaaattttctttcccatttggatttataatcaattggctgatgaaa 200  Q
    ||||||||||||||||||| |||||| |||||||||||||| || |||||||| ||| ||||||| ||  ||||||||||||||||||||  |||  |||    
T  15927285 atggaaatggcaagtaagagaagaaatttaaatccacatgcggatcgttcaagccaacttttcttccctttttggatttataatcaattgattgaaaaaa 15927384  T
Q  201 gggaaatagaaatgga 216  Q
    |||| ||||| |||||    
T  15927385 gggagatagagatgga 15927400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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