View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1931_low_12 (Length: 237)
Name: NF1931_low_12
Description: NF1931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1931_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 191
Target Start/End: Complemental strand, 9570217 - 9570150
Alignment:
| Q |
124 |
tcattcactaaaggaaaaatataattattttcattgatatggaaatcagataagtttgcaaatggaaa |
191 |
Q |
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| T |
9570217 |
tcattcactaaagtcaaaagatcaatattttcattgatattgaaatcagataagtttgcaaatggaaa |
9570150 |
T |
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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 37896041 - 37895978
Alignment:
| Q |
151 |
ttttcattgatatggaaatcagataagtttgcaaatggaaagaaagacactaaacattcaaaataaaa |
218 |
Q |
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| T |
37896041 |
ttttcattgatatggaaatcagataagttcgcaa----aaagaaagagactaaacattcaaaataaaa |
37895978 |
T |
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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 9601515 - 9601560
Alignment:
| Q |
4 |
aacaagtgacaataaataactgagcatcatggaaagttgcctaata |
49 |
Q |
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| T |
9601515 |
aacaagtaacaataaataactgagcatcatggaaagttgcttaata |
9601560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 220
Target Start/End: Original strand, 9581378 - 9581446
Alignment:
| Q |
147 |
attattttcattgatatggaaatcagataagtttgcaaatggaaagaaagacactaaacattcaaaataaaaac |
220 |
Q |
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| T |
9581378 |
attactttcaatgatatggaaatcaaa-aagttcgcaaat----agaaagagactaaacattcaaaataaaaac |
9581446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 220
Target Start/End: Original strand, 9587073 - 9587141
Alignment:
| Q |
147 |
attattttcattgatatggaaatcagataagtttgcaaatggaaagaaagacactaaacattcaaaataaaaac |
220 |
Q |
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| T |
9587073 |
attactttcaatgatatggaaatcaaa-aagttcgcaaat----agaaagagactaaacattcaaaataaaaac |
9587141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 29145779 - 29145731
Alignment:
| Q |
145 |
taattattttcattgatatggaaatcagataagtttgcaaatggaaaga |
193 |
Q |
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| T |
29145779 |
taattatattcaatgatatggaaatcaaatcagtttgtaaatggaaaga |
29145731 |
T |
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