View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1931_low_3 (Length: 613)
Name: NF1931_low_3
Description: NF1931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1931_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 8 - 414
Target Start/End: Original strand, 13590399 - 13590805
Alignment:
| Q |
8 |
cgaagaatatgttatcgaaatcaaatacatcaatgcatccagaatcaaccttgctctttgatcaataagaacaaccattcacacaaaatcaaatatgttt |
107 |
Q |
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| T |
13590399 |
cgaagaatatgttatcgaaatcaaatacatcaatgcatccagaatcaaccttgctctttgatcaataagaacaaccattcacacaaaatcaaatatgttt |
13590498 |
T |
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| Q |
108 |
cgaatgcatccttttattaaccaataagaacgatcaaggaggtatcaaacaaaataaattaattgattccaatccaacaaattagagatgattacctcaa |
207 |
Q |
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| T |
13590499 |
cgaatgcatccttttattaaccaataagaacgatcaaggaggtatcaaacaaaacaaattaattgattccaatccatcaaattagagatgattacctcaa |
13590598 |
T |
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| Q |
208 |
aactcaattgaagtgcaactgatcaataattctaaggaaatcacagtagcttcatattgcatnnnnnnnnnnnnngatctatgttcaaacccattaaatc |
307 |
Q |
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| T |
13590599 |
aactcaattgaagtgcaactgatcaataattctaaggaaatcacaatagcttcatattgcataaaaataaaaaaagatctatgttcaaacccattaaatc |
13590698 |
T |
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| Q |
308 |
ccaaaatgaattgttgtattatcttgattgaagtttagataaaaataagcagaggtatattcatttatgtgagcttctactgaatattattaagattagg |
407 |
Q |
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| T |
13590699 |
ccaaaatgaattgttgtattatcttgattgaagtttagataaaaataagctgaggtatattcatttatgtgagcttctactgaatattattaagattagg |
13590798 |
T |
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| Q |
408 |
ataagta |
414 |
Q |
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| T |
13590799 |
ataagta |
13590805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 502 - 600
Target Start/End: Original strand, 13590891 - 13590990
Alignment:
| Q |
502 |
attgtttgtacatcataacaaataataacaaattatgagtttgttacacataacaacccttaattttctcaagt-tttgcccatatataaggaattactt |
600 |
Q |
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| T |
13590891 |
attgtttgtacatcataacaaataataacaaattatgagtttgttacacataacaacccttaattttctcaagtctttgcccatatataaggaattactt |
13590990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 526 - 572
Target Start/End: Complemental strand, 30969818 - 30969773
Alignment:
| Q |
526 |
ataacaaattatgagtttgttacacataacaacccttaattttctca |
572 |
Q |
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| T |
30969818 |
ataacaaatcatgagtttgttaca-ataacaacccttgattttctca |
30969773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 526 - 572
Target Start/End: Original strand, 23499438 - 23499483
Alignment:
| Q |
526 |
ataacaaattatgagtttgttacacataacaacccttaattttctca |
572 |
Q |
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| T |
23499438 |
ataacaaatcatgagtttgttaaa-ataacaacccttaattttctca |
23499483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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