View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1931_low_4 (Length: 595)

Name: NF1931_low_4
Description: NF1931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1931_low_4
NF1931_low_4
[»] chr4 (12 HSPs)
chr4 (1-397)||(35313558-35313966)
chr4 (340-595)||(35313941-35314196)
chr4 (156-321)||(45582844-45583019)
chr4 (342-395)||(23242521-23242574)
chr4 (351-415)||(26184183-26184247)
chr4 (340-391)||(27992232-27992283)
chr4 (351-398)||(28797837-28797884)
chr4 (335-397)||(35313221-35313283)
chr4 (351-416)||(19487538-19487603)
chr4 (367-400)||(26252997-26253030)
chr4 (351-399)||(4787225-4787273)
chr4 (375-411)||(47178011-47178047)
[»] chr3 (6 HSPs)
chr3 (1-104)||(45176859-45176966)
chr3 (351-398)||(35995531-35995579)
chr3 (352-400)||(45003183-45003231)
chr3 (375-422)||(2652398-2652445)
chr3 (351-398)||(53825594-53825641)
chr3 (372-400)||(8150297-8150325)
[»] chr5 (5 HSPs)
chr5 (340-392)||(6158163-6158215)
chr5 (381-444)||(16109206-16109269)
chr5 (381-416)||(40266433-40266468)
chr5 (353-398)||(762961-763007)
chr5 (377-426)||(36581060-36581109)
[»] chr1 (3 HSPs)
chr1 (1-47)||(27429989-27430035)
chr1 (351-422)||(10884401-10884472)
chr1 (382-422)||(7330767-7330807)
[»] chr7 (4 HSPs)
chr7 (383-424)||(1327386-1327427)
chr7 (351-414)||(15819805-15819868)
chr7 (351-398)||(26501184-26501231)
chr7 (351-398)||(26591483-26591530)
[»] chr6 (3 HSPs)
chr6 (351-400)||(24359107-24359156)
chr6 (354-398)||(4321386-4321431)
chr6 (351-400)||(10378829-10378878)
[»] chr8 (6 HSPs)
chr8 (381-424)||(30201827-30201870)
chr8 (374-416)||(150921-150963)
chr8 (399-444)||(15908927-15908972)
chr8 (372-400)||(1349107-1349135)
chr8 (372-416)||(32035969-32036013)
chr8 (382-418)||(33228248-33228284)
[»] chr2 (5 HSPs)
chr2 (372-415)||(25770300-25770343)
chr2 (375-416)||(24582452-24582493)
chr2 (381-421)||(6610283-6610323)
chr2 (351-391)||(8241818-8241858)
chr2 (382-414)||(41358095-41358127)


Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-169; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 35313558 - 35313966
Alignment:
Q  1 ttcttcattcacatggattcaacagcaacttacgttcctttcattaa----aaattcacagaggtgcatgccctacaaaactaccaacatgtttgtaagc 96  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35313558 ttcttcattcacatggattcaacagcaacttatgttccgttcattaatttaaaattcacagaggtgcatgccctacaaaactaccaacatgtttgtaagc 35313657  T
Q  97 tctcaaatacaattcttatttcatctccttcaattgacatggcccattccttttaaacaatcagaatttgagctctccaattgaccttcaattgtataaa 196  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  35313658 tctcaaatacaattcttatttcatctccttcaattaacatggcccattcgttttaaacaaacagaatttgagctctccaattgaccttcaattgtataaa 35313757  T
Q  197 ttcgatagcaataaatattacacgtataacagagggcaacagtaaagcaccaccaatgaccaaaaccttta----tccctcattcttagtcactttcatt 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||    
T  35313758 ttcgatagcaataaatattacacgtataacagagggcaacagtaaagcaccaccaatgaccaaaacctttatccctccctcattcttagtcactttcatt 35313857  T
Q  293 c----acttggacaaacactgtgtggttggtaagacttgtattttgattgtttaaaactaaagtgagttaactaacgtagaggtttacactagcgtgagt 388  Q
    |    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||  || | |||| || ||||    
T  35313858 cacttacttggacatacactgtgtggttggtaagacttgtattttgattgtttaaaactaaagtgagttaactcacttagaaattaaaactaacgcgagt 35313957  T
Q  389 taactcacg 397  Q
    |||||||||    
T  35313958 taactcacg 35313966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 340 - 595
Target Start/End: Original strand, 35313941 - 35314196
Alignment:
Q  340 ttaaaactaaagtgagttaactaacgtagaggtttacactagcgtgagttaactcacgcagcatgagttaactcacgtaggggtaattttgtattttcag 439  Q
    |||||||||| | ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35313941 ttaaaactaacgcgagttaactcacgtagagatttacactagcgtgagttaactcacgcagcatgagttaactcacgtaggggtaattttgtattttcag 35314040  T
Q  440 ttgggtgcagaattcaaaaatttggaagcctaaagagtaactttcattttcaatttcgtgtaatactcaatgttcaatttattgggttattttgcagagt 539  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35314041 ttgggtgcagaattcaaaaatttggaagcctaaagagtaactttcattttcaatttcgtgtaatactcaatgttcaatttattgggttattttgcagagt 35314140  T
Q  540 taggccctatttaaaagggtataattcaaaggaaattattcttaaacaaaaaacat 595  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35314141 taggccctatttaaaagggtataattcaaaggaaattactcttaaacaaaaaacat 35314196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 156 - 321
Target Start/End: Original strand, 45582844 - 45583019
Alignment:
Q  156 atcagaatttgagctctccaattgaccttcaattgtataaattcgatagcaataaatatt--------acacgtata--acagagggcaacagtaaagca 245  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||        ||| |||||  |||||||||||||||||||||    
T  45582844 atcagaatttgagctcttcagttgaccttcaattgtataaattcgataacaataaatattggtctcctacatgtatataacagagggcaacagtaaagca 45582943  T
Q  246 ccaccaatgaccaaaacctttatccctcattcttagtcactttcattcacttggacaaacactgtgtggttggtaa 321  Q
    ||||||||||||||| || |||| |||||||||||||||||||||||||| |||||| | || ||| |||||||||    
T  45582944 ccaccaatgaccaaagccattatacctcattcttagtcactttcattcacatggacataaacagtgaggttggtaa 45583019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 342 - 395
Target Start/End: Complemental strand, 23242574 - 23242521
Alignment:
Q  342 aaaactaaagtgagttaactaacgtagaggtttacactagcgtgagttaactca 395  Q
    |||||||| ||||||||||| |||||||| |||||||| |||||||||||||||    
T  23242574 aaaactaacgtgagttaactcacgtagagatttacactggcgtgagttaactca 23242521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 415
Target Start/End: Original strand, 26184183 - 26184247
Alignment:
Q  351 gtgagttaactaacgtagaggtttacactagcgtgagttaactcacgcagcatgagttaactcac 415  Q
    ||||||||||| | | ||||||| |||||||| |||||||| ||||||||| |||||||| ||||    
T  26184183 gtgagttaactcaagcagaggttaacactagcttgagttaattcacgcagcttgagttaagtcac 26184247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 391
Target Start/End: Original strand, 27992232 - 27992283
Alignment:
Q  340 ttaaaactaaagtgagttaactaacgtagaggtttacactagcgtgagttaa 391  Q
    |||||||||| | ||||||||| | |||||| ||||||||||||||||||||    
T  27992232 ttaaaactaacgcgagttaactcatgtagagatttacactagcgtgagttaa 27992283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 398
Target Start/End: Complemental strand, 28797884 - 28797837
Alignment:
Q  351 gtgagttaactaacgtagaggtttacactagcgtgagttaactcacgc 398  Q
    ||||||||||| ||||  ||||| ||||||||||||||||||||||||    
T  28797884 gtgagttaactcacgtccaggttaacactagcgtgagttaactcacgc 28797837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 397
Target Start/End: Complemental strand, 35313283 - 35313221
Alignment:
Q  335 attgtttaaaactaaagtgagttaactaacgtagaggtttacactagcgtgagttaactcacg 397  Q
    |||||||||||| || ||||||||||| |||||||  || | |||||||||| ||||||||||    
T  35313283 attgtttaaaaccaacgtgagttaactcacgtagaaattaaaactagcgtgatttaactcacg 35313221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 416
Target Start/End: Complemental strand, 19487603 - 19487538
Alignment:
Q  351 gtgagttaactaacgtagaggtttacactagcgtgagttaactcacgcagcatgagttaactcacg 416  Q
    ||||||||||| ||| ||| |||||   |||| |||||||||||||||||| |||||||| |||||    
T  19487603 gtgagttaactcacgcagatgtttattttagcatgagttaactcacgcagcgtgagttaagtcacg 19487538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 400
Target Start/End: Original strand, 26252997 - 26253030
Alignment:
Q  367 agaggtttacactagcgtgagttaactcacgcag 400  Q
    |||| |||||||||||||||||||||||||||||    
T  26252997 agagatttacactagcgtgagttaactcacgcag 26253030  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 4787225 - 4787273
Alignment:
Q  351 gtgagttaactaacgtagaggtttacactagcgtgagttaactcacgca 399  Q
    ||||||||||| || ||||| || |||||||||||||||||||| ||||    
T  4787225 gtgagttaactcacatagagattaacactagcgtgagttaactctcgca 4787273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 375 - 411
Target Start/End: Complemental strand, 47178047 - 47178011
Alignment:
Q  375 acactagcgtgagttaactcacgcagcatgagttaac 411  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  47178047 acactagcgtgagttaagtcacgcagcatgacttaac 47178011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 45176859 - 45176966
Alignment:
Q  1 ttcttcattcacatggattcaacagcaacttacgttcctttcattaa----aaattcacagaggtgcatgccctacaaaactaccaacatgtttgtaagc 96  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45176859 ttcttcattcacatggattcaacagcaacttatgttcctttcattaatttaaaattcacagaggtgcatgccctacaaaactaccaacatgtttgtaagc 45176958  T
Q  97 tctcaaat 104  Q
    ||||||||    
T  45176959 tctcaaat 45176966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 398
Target Start/End: Original strand, 35995531 - 35995579
Alignment:
Q  351 gtgagttaactaacgtaga-ggtttacactagcgtgagttaactcacgc 398  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  35995531 gtgagttaactaacgtagaaggttaacactagcgtgagttaactcacgc 35995579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 400
Target Start/End: Original strand, 45003183 - 45003231
Alignment:
Q  352 tgagttaactaacgtagaggtttacactagcgtgagttaactcacgcag 400  Q
    |||||||||| |||||||| || ||||||||||||||||||||||||||    
T  45003183 tgagttaactcacgtagagattaacactagcgtgagttaactcacgcag 45003231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 422
Target Start/End: Complemental strand, 2652445 - 2652398
Alignment:
Q  375 acactagcgtgagttaactcacgcagcatgagttaactcacgtagggg 422  Q
    |||||||||||||||||||||||||||   |||||||| |||||||||    
T  2652445 acactagcgtgagttaactcacgcagcgcaagttaacttacgtagggg 2652398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 398
Target Start/End: Complemental strand, 53825641 - 53825594
Alignment:
Q  351 gtgagttaactaacgtagaggtttacactagcgtgagttaactcacgc 398  Q
    ||||||||||| ||||  ||||| ||||||||||||||||||||||||    
T  53825641 gtgagttaactcacgtccaggttgacactagcgtgagttaactcacgc 53825594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 372 - 400
Target Start/End: Original strand, 8150297 - 8150325
Alignment:
Q  372 tttacactagcgtgagttaactcacgcag 400  Q
    |||||||||||||||||||||||||||||    
T  8150297 tttacactagcgtgagttaactcacgcag 8150325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 392
Target Start/End: Complemental strand, 6158215 - 6158163
Alignment:
Q  340 ttaaaactaaagtgagttaactaacgtagaggtttacactagcgtgagttaac 392  Q
    |||||||||| ||||||||||| | |||||| |||||||||||||||||||||    
T  6158215 ttaaaactaacgtgagttaactcatgtagagatttacactagcgtgagttaac 6158163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 444
Target Start/End: Complemental strand, 16109269 - 16109206
Alignment:
Q  381 gcgtgagttaactcacgcagcatgagttaactcacgtaggggtaattttgtattttcagttggg 444  Q
    ||||||||||||||||||| ||||| |||| ||||| ||||| | |||||| ||||||||||||    
T  16109269 gcgtgagttaactcacgcaacatgacttaaatcacgcaggggcatttttgtcttttcagttggg 16109206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 416
Target Start/End: Original strand, 40266433 - 40266468
Alignment:
Q  381 gcgtgagttaactcacgcagcatgagttaactcacg 416  Q
    |||||||||||||| |||||||||||||||||||||    
T  40266433 gcgtgagttaactcccgcagcatgagttaactcacg 40266468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 353 - 398
Target Start/End: Complemental strand, 763007 - 762961
Alignment:
Q  353 gagttaactaacgtaga-ggtttacactagcgtgagttaactcacgc 398  Q
    ||||||||| ||||||| |||| ||||||||||||||||||||||||    
T  763007 gagttaactcacgtagaaggttaacactagcgtgagttaactcacgc 762961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 426
Target Start/End: Original strand, 36581060 - 36581109
Alignment:
Q  377 actagcgtgagttaactcacgcagcatgagttaactcacgtaggggtaat 426  Q
    ||||||||||||||| ||||||||| | |||||||||||  |||||||||    
T  36581060 actagcgtgagttaattcacgcagcgtaagttaactcacacaggggtaat 36581109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 27430035 - 27429989
Alignment:
Q  1 ttcttcattcacatggattcaacagcaacttacgttcctttcattaa 47  Q
    |||||||||||||||||||||||| ||||| | ||||||||||||||    
T  27430035 ttcttcattcacatggattcaacatcaactaatgttcctttcattaa 27429989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 422
Target Start/End: Complemental strand, 10884472 - 10884401
Alignment:
Q  351 gtgagttaactaacgtagaggtttacactagcgtgagttaactcacgcagcatgagttaactcacgtagggg 422  Q
    ||||||||||| ||| |||| |||||||||| ||||||||||||| |  ||  ||||||||||||| |||||    
T  10884472 gtgagttaactcacgcagagatttacactagagtgagttaactcatgttgcgggagttaactcacgcagggg 10884401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 382 - 422
Target Start/End: Complemental strand, 7330807 - 7330767
Alignment:
Q  382 cgtgagttaactcacgcagcatgagttaactcacgtagggg 422  Q
    |||||||||||||||||| | |||||||||| |||||||||    
T  7330807 cgtgagttaactcacgcatcgtgagttaacttacgtagggg 7330767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 383 - 424
Target Start/End: Original strand, 1327386 - 1327427
Alignment:
Q  383 gtgagttaactcacgcagcatgagttaactcacgtaggggta 424  Q
    ||||||||||||||||||| |||||||||||| |||||||||    
T  1327386 gtgagttaactcacgcagcgtgagttaactcatgtaggggta 1327427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 414
Target Start/End: Complemental strand, 15819868 - 15819805
Alignment:
Q  351 gtgagttaactaacgtagaggtttacactagcgtgagttaactcacgcagcatgagttaactca 414  Q
    ||||||||| |  ||| ||| ||||||||||||||| |||||||||||||| || |||||||||    
T  15819868 gtgagttaagtcgcgttgagatttacactagcgtgacttaactcacgcagcgtgtgttaactca 15819805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 398
Target Start/End: Original strand, 26501184 - 26501231
Alignment:
Q  351 gtgagttaactaacgtagaggtttacactagcgtgagttaactcacgc 398  Q
    ||||||||||| ||||  ||||| ||||||||||||||||||||||||    
T  26501184 gtgagttaactcacgtccaggttaacactagcgtgagttaactcacgc 26501231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 398
Target Start/End: Complemental strand, 26591530 - 26591483
Alignment:
Q  351 gtgagttaactaacgtagaggtttacactagcgtgagttaactcacgc 398  Q
    ||||||||||| ||||  ||||| ||||||||||||||||||||||||    
T  26591530 gtgagttaactcacgtccaggttaacactagcgtgagttaactcacgc 26591483  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 351 - 400
Target Start/End: Complemental strand, 24359156 - 24359107
Alignment:
Q  351 gtgagttaactaacgtagaggtttacactagcgtgagttaactcacgcag 400  Q
    |||| |||||| |||||||| |||||||||||||||||||||||| ||||    
T  24359156 gtgacttaactcacgtagagatttacactagcgtgagttaactcatgcag 24359107  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 398
Target Start/End: Complemental strand, 4321431 - 4321386
Alignment:
Q  354 agttaactaacgtaga-ggtttacactagcgtgagttaactcacgc 398  Q
    |||||||| ||||||| |||| ||||||||||||||||||||||||    
T  4321431 agttaactcacgtagaaggttaacactagcgtgagttaactcacgc 4321386  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 400
Target Start/End: Original strand, 10378829 - 10378878
Alignment:
Q  351 gtgagttaactaacgtagaggtttacactagcgtgagttaactcacgcag 400  Q
    ||||||||| | ||| | || |||||||||||||||||||||||||||||    
T  10378829 gtgagttaaatcacgcatagatttacactagcgtgagttaactcacgcag 10378878  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 424
Target Start/End: Complemental strand, 30201870 - 30201827
Alignment:
Q  381 gcgtgagttaactcacgcagcatgagttaactcacgtaggggta 424  Q
    |||||||||||||||| |||||||| ||||||||||| ||||||    
T  30201870 gcgtgagttaactcacacagcatgacttaactcacgtgggggta 30201827  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 416
Target Start/End: Original strand, 150921 - 150963
Alignment:
Q  374 tacactagcgtgagttaactcacgcagcatgagttaactcacg 416  Q
    |||||||||||||||||||||||||| | |||||||| |||||    
T  150921 tacactagcgtgagttaactcacgcaacgtgagttaagtcacg 150963  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 444
Target Start/End: Complemental strand, 15908972 - 15908927
Alignment:
Q  399 agcatgagttaactcacgtaggggtaattttgtattttcagttggg 444  Q
    |||||||||||||||| | | |||||||||||| ||||||||||||    
T  15908972 agcatgagttaactcatgcatgggtaattttgtcttttcagttggg 15908927  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 372 - 400
Target Start/End: Complemental strand, 1349135 - 1349107
Alignment:
Q  372 tttacactagcgtgagttaactcacgcag 400  Q
    |||||||||||||||||||||||||||||    
T  1349135 tttacactagcgtgagttaactcacgcag 1349107  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 372 - 416
Target Start/End: Original strand, 32035969 - 32036013
Alignment:
Q  372 tttacactagcgtgagttaactcacgcagcatgagttaactcacg 416  Q
    ||||||||||| ||||||||||||| || ||||| ||||||||||    
T  32035969 tttacactagcatgagttaactcacccaacatgatttaactcacg 32036013  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 33228284 - 33228248
Alignment:
Q  382 cgtgagttaactcacgcagcatgagttaactcacgta 418  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  33228284 cgtgagttaactcacgcagcgtgacttaactcacgta 33228248  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 415
Target Start/End: Complemental strand, 25770343 - 25770300
Alignment:
Q  372 tttacactagcgtgagttaactcacgcagcatgagttaactcac 415  Q
    ||||||||||| ||| |||||||||||||| |||||||||||||    
T  25770343 tttacactagcatgaattaactcacgcagcgtgagttaactcac 25770300  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 416
Target Start/End: Complemental strand, 24582493 - 24582452
Alignment:
Q  375 acactagcgtgagttaactcacgcagcatgagttaactcacg 416  Q
    ||||| ||||||||||| |||||| |||||||||||||||||    
T  24582493 acacttgcgtgagttaagtcacgctgcatgagttaactcacg 24582452  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 421
Target Start/End: Original strand, 6610283 - 6610323
Alignment:
Q  381 gcgtgagttaactcacgcagcatgagttaactcacgtaggg 421  Q
    |||||||||||||||||| | ||||||||||||||| ||||    
T  6610283 gcgtgagttaactcacgctgtatgagttaactcacgcaggg 6610323  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 8241858 - 8241818
Alignment:
Q  351 gtgagttaactaacgtagaggtttacactagcgtgagttaa 391  Q
    ||||||||||| ||| |||| ||||||||||||||||||||    
T  8241858 gtgagttaactcacgcagagatttacactagcgtgagttaa 8241818  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 382 - 414
Target Start/End: Original strand, 41358095 - 41358127
Alignment:
Q  382 cgtgagttaactcacgcagcatgagttaactca 414  Q
    |||||||||||||||||| ||||||||||||||    
T  41358095 cgtgagttaactcacgcaacatgagttaactca 41358127  T

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